CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, endoplasmic reticulum

Predictor Summary:

extracellular 3
golgi 4
plasma membrane 3
endoplasmic reticulum 4
vacuole 3
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	mitochondrion
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d005369_P001	Maize	mitochondrion	29.07	74.59
TraesCS5B01G371300.1	Wheat	endoplasmic reticulum, vacuole	68.37	67.51
TraesCS5A01G368900.1	Wheat	endoplasmic reticulum, extracellular	67.41	66.77
TraesCS5D01G378400.2	Wheat	endoplasmic reticulum, extracellular	67.73	65.23
HORVU5Hr1G091920.4	Barley	endoplasmic reticulum	67.41	59.6
KXG25698	Sorghum	cytosol	51.44	40.05
KXG34172	Sorghum	nucleus	48.56	39.28
EES13310	Sorghum	mitochondrion	49.52	37.99
KXG20338	Sorghum	nucleus	53.35	37.36
EES04073	Sorghum	nucleus	53.04	36.17
OQU79014	Sorghum	plastid	53.99	31.95
KXG30293	Sorghum	cytosol	23.64	12.8
KXG21864	Sorghum	cytosol	23.64	12.65
OQU79015	Sorghum	mitochondrion	1.28	4.82

Protein Annotations

MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	EntrezGene:8061672	UniProt:C5X5U4	InterPro:Copine	EnsemblPlants:EER98488
ProteinID:EER98488	ProteinID:EER98488.1	InterPro:IPR002035	InterPro:IPR036465	PFAM:PF07002	PANTHER:PTHR10857
PANTHER:PTHR10857:SF68	SMART:SM00327	EnsemblPlantsGene:SORBI_3002G131800	SUPFAM:SSF53300	SignalP:SignalP-noTM	UniParc:UPI0001A8416A
InterPro:VWF_A	RefSeq:XP_002461967.1	SEG:seg	InterPro:vWFA_dom_sf	:	:

Description

hypothetical protein

Coordinates

chr2:-:18778597..18782366

Molecular Weight (calculated)

35255.5 Da

IEP (calculated)

5.353

GRAVY (calculated)

-0.351

Length

313 amino acids

Sequence
(BLAST)

001: MFFSTFLLLF WTVFAWTTRH KRVVPAQRPY AKIDRNYDNL DQVKAALQLA GLESSNLIIG VDFTKSNEWT GKRCFNGRSL HHLGGPPNPY EQAISIIGKT
101: LSGFDEDNQI PCFGFGDTST HDQHVFSFYR GGRVCNGVNE ALQRYREIAP HVRLSGPTSL APIIETATKV VHDHGYQYHI LLIIADGQVP TSSSAPYANN
201: SEEARSENYL EERTVQALID ASDFPLSIVL VGVGDGPWDD LIHCNDNRRR FDNFQFVDFT EIMSREMSEG DKEDEFTLEA LMKIPAQHDA IISQNISELM
301: TRAPRTTTLP PPC

Best Arabidopsis Sequence Match ( AT3G01650.1 )
(BLAST)

001: MGGGNSKEES SSPSSSSWAS HQSYPQYGPD SYNYPPPPTY APAPSPAPAP APVPAPSPAS SYGPQYSQEG YASQPNNPPP PTYAPAPSPA SSYGHQYSQE
101: GYASAASQPN YPPPPSQSQV ADRKKFDRRY SKISDNYSSL LQVSEALGRA GLESSNLIVG IDFTKSNEWT GAKSFNRKSL HHLSNTPNPY EQAITIIGRT
201: LAAFDEDNLI PCYGFGDAST HDQDVFSFYP EGRFCNGFEE VLARYREIVP QLKLAGPTSF APIIEMAMTV VEQSSGQYHV LVIIADGQVT RSVDTEHGRL
301: SPQEQKTVDA IVKASTLPLS IVLVGVGDGP WDMMQEFDDN IPARAFDNFQ FVNFTEIMSK NKDQSRKETE FALSALMEIP PQYKATIELN LLGVRNGNIP
401: QRIPLPPPVQ SGSSFSSSRI PNFEPSVPPY PFESKQMSSA DDIQLCPICL SNPKNMAFGC GHQTCCECGP DLKVCPICRA PIQTRIKLY

Arabidopsis Description

RGLG1E3 ubiquitin-protein ligase RGLG1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SS90]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.