CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046554_P003	Maize	cytosol, plastid	94.18	94.61
Zm00001d036831_P006	Maize	cytosol	90.6	88.43
Os06t0608800-02	Rice	nucleus	88.14	88.14
TraesCS7B01G283200.1	Wheat	cytosol	85.68	83.99
TraesCS7A01G381300.1	Wheat	plastid	85.23	83.37
TraesCS7D01G377600.1	Wheat	plastid	85.01	83.15
GSMUA_Achr2P05470_001	Banana	nucleus	66.89	79.95
TraesCS7A01G381200.1	Wheat	cytosol, plastid	77.63	78.68
TraesCS7D01G377500.1	Wheat	plastid	78.97	77.75
TraesCS7B01G283100.1	Wheat	cytosol	76.96	77.65
KXG25698	Sorghum	cytosol	58.39	64.93
KRH07106	Soybean	cytosol, plastid	41.16	63.23
VIT_00s0780g00040.t01	Wine grape	cytosol, mitochondrion, nucleus	58.61	59.95
EES04073	Sorghum	nucleus	61.52	59.91
KXG34172	Sorghum	nucleus	48.99	56.59
EES13310	Sorghum	mitochondrion	50.34	55.15
EER98488	Sorghum	endoplasmic reticulum, golgi	37.36	53.35
KRH07102	Soybean	cytosol	16.33	52.14
CDY49067	Canola	extracellular	17.0	50.67
OQU79014	Sorghum	plastid	52.13	44.05
Bra012681.1-P	Field mustard	cytosol	10.29	41.07
Bra018339.1-P	Field mustard	cytosol	12.53	37.84
OQU79015	Sorghum	mitochondrion	6.26	33.73
CDY03984	Canola	cytosol	16.78	25.25
KXG21864	Sorghum	cytosol	21.7	16.58
KXG30293	Sorghum	cytosol	19.46	15.05

Protein Annotations

MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	UniProt:A0A194YK58	InterPro:Copine	InterPro:IPR001841
InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465	EnsemblPlants:KXG20338	ProteinID:KXG20338	ProteinID:KXG20338.1
ProteinID:KXG20339.1	PFAM:PF07002	PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR10857	PANTHER:PTHR10857:SF28
SMART:SM00184	SMART:SM00327	EnsemblPlantsGene:SORBI_3010G188400	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI0001C805F3
InterPro:VWF_A	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:

Description

hypothetical protein

Coordinates

chr10:-:52888931..52894165

Molecular Weight (calculated)

49804.1 Da

IEP (calculated)

6.007

GRAVY (calculated)

-0.531

Length

447 amino acids

Sequence
(BLAST)

001: MGQKDSKPSY GYGYSYDYGS TSSGYNSRNT GNTSSGYSAR YAPSSENNVQ PETTARLQRK YSRIGDDYRS LSQVTEALAQ AGLESSNLIV GIDFTKSNEW
101: TGKISFNRRC LHDIGNTPNP YEQAISIIGR TLSAFDEDNL IPCFGFGDAS THDQEVFSFY PENRPCNGFE EALDRYREIV PTLRLAGPTS FAPIIETAVG
201: IVDSTGGQYH VLLIIADGQV TRSVDTQSGQ LSPQERATID AIVRASQFPL SIVLVGVGDG PWDMMHQFDD NIPARSFDNF QFVNFTEIMS KSVAADRKEA
301: EFALSALMEI PTQYKATLDL QLLGRRQRIT PRIALPPPIR NAYSRSTSFS QQSGVYSRSS SFDQQTSGFQ QRSESLKQQQ PAAPKRPDTD TYASERALED
401: RILCPICMYK SKDLAFGCGH QTCYECGKNL ERCPLCQQHI TTRIRLY

Best Arabidopsis Sequence Match ( AT5G14420.1 )
(BLAST)

001: MGTGNSKENW RQSSFRSTSA SSASPSSSSW ASQQSYPQYG AESYNYPPPP SYAQPPEYTQ PPPPLYSTQP YSAPSYSAPP SQSYGSDNKK RLERKYSKIS
101: DDYSSLEQVT EALARAGLES SNLIVGIDFT KSNEWTGARS FNRKSLHFIG SSPNPYEQAI TIIGRTLAAF DEDNLIPCYG FGDASTHDQD VFSFNSEDRF
201: CNGFEEVLSR YKEIVPQLKL AGPTSFAPII DMAMTIVEQS GGQYHVLVII ADGQVTRSVD TENGQLSPQE QKTVDAIVQA SKLPLSIVLV GVGDGPWDMM
301: REFDDNIPAR AFDNFQFVNF TEIMAKNKAQ SLKETEFALS ALMEIPQQYK ATIELNLLGR RNGYIPERFP LPPPMRGGSS SYNSPKPSRL PSFKPSVPPH
401: PTEGYHVRSS PVPPPTSSAS DNQLCPICLS NPKDMAFGCG HQTCCECGPD LQMCPICRAP IQTRIKLY

Arabidopsis Description

RGLG2E3 ubiquitin-protein ligase RGLG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY87]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.