Factsheet for VIT_00s0780g00040.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P12830_001	Banana	cytosol, mitochondrion, nucleus, plastid	60.64	64.79
KRH07106	Soybean	cytosol, plastid	40.27	60.48
Os06t0608800-02	Rice	nucleus	60.64	59.28
VIT_01s0137g00460.t01	Wine grape	nucleus	59.5	58.82
Zm00001d046554_P003	Maize	cytosol, plastid	59.73	58.65
KXG20338	Sorghum	nucleus	59.95	58.61
VIT_17s0000g09640.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	57.89	58.43
TraesCS7B01G283200.1	Wheat	cytosol	60.64	58.11
TraesCS7A01G381200.1	Wheat	cytosol, plastid	58.35	57.82
TraesCS7A01G381300.1	Wheat	plastid	60.41	57.77
TraesCS7D01G377600.1	Wheat	plastid	60.41	57.77
VIT_04s0044g01620.t01	Wine grape	cytosol	48.05	57.22
TraesCS7B01G283100.1	Wheat	cytosol	57.89	57.11
TraesCS7D01G377500.1	Wheat	plastid	57.89	55.73
VIT_19s0085g01000.t01	Wine grape	extracellular	48.97	55.58
VIT_14s0066g00290.t01	Wine grape	mitochondrion	58.35	55.31
Zm00001d036831_P006	Maize	cytosol	56.52	53.93
KRH07102	Soybean	cytosol	15.79	49.29
CDY49067	Canola	extracellular	16.02	46.67
Bra012681.1-P	Field mustard	cytosol	10.07	39.29
Bra018339.1-P	Field mustard	cytosol	11.9	35.14
VIT_18s0001g15760.t01	Wine grape	cytosol, extracellular	7.32	33.33
VIT_18s0072g00560.t01	Wine grape	peroxisome	11.67	30.36
CDY03984	Canola	cytosol	17.16	25.25
VIT_14s0030g00540.t01	Wine grape	cytosol	18.99	18.12
VIT_14s0030g00550.t01	Wine grape	cytosol	19.22	17.57
VIT_14s0030g00600.t01	Wine grape	cytosol	20.37	17.12
VIT_12s0121g00080.t01	Wine grape	cytosol	21.51	15.8
VIT_14s0030g00500.t01	Wine grape	cytosol	21.05	15.49
VIT_17s0000g00210.t01	Wine grape	cytosol	20.14	15.28
VIT_14s0030g00570.t01	Wine grape	cytosol	21.28	13.94

Protein Annotations

EntrezGene:100255057	wikigene:100255057	MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	ProteinID:CCB62921
ProteinID:CCB62921.1	InterPro:Copine	UniProt:F6I7K3	EMBL:FN596807	InterPro:IPR001841	InterPro:IPR002035
InterPro:IPR013083	InterPro:IPR036465	EntrezGene:LOC100255057	wikigene:LOC100255057	PFAM:PF07002	PFAM:PF13920
PFscan:PS50089	PANTHER:PTHR10857	PANTHER:PTHR10857:SF105	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850
UniParc:UPI000210ABF6	ArrayExpress:VIT_00s0780g00040	EnsemblPlantsGene:VIT_00s0780g00040	EnsemblPlants:VIT_00s0780g00040.t01	InterPro:VWF_A	RefSeq:XP_002271937
RefSeq:XP_002271937.2	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:

Description

No Description!

Coordinates

chrUn:-:35320893..35324053

Molecular Weight (calculated)

48815.1 Da

IEP (calculated)

6.443

GRAVY (calculated)

-0.441

Length

437 amino acids

Sequence
(BLAST)

001: NRTLLDRRKL SNLLAYRAGE ANMGIKQSRA QSYHHNTPYQ YPPPPPSIPS SSPYHSYSAR YVDPERSGLQ ARYSRIGDDY SSVEQVTEAL YEAGLESSNL
101: IVGIDFTKSN EWTGARSFNR KSLHHVGDSL NPYQQAISII GRTLSAFDED NLIPCYGFGD ATTHDQEVFS FFPDDRPCNG FEEVLSRYKE LVPQIRLAGP
201: TSFAPIIETA IEIVDTSGGQ YHVLVIIADG QVTRSVDTHY GQLSRQEQNT INAIVKASEY PLSIVLVGVG DGPWDVMQQF DDNIPSRAFD NFQFVNFTDI
301: TRRNTSISKK EADFALAALM EIPSQYKATL DLHLLGCRRG TPGRTPLPPP VKIHPIVNSY TPYQGSSNFE QSIAYRFAPS PAPTDNSSHN RNCPVCFFST
401: KDLAFGCGHQ ACYECGKELV NCPICRTHIT TRIRLYD

Best Arabidopsis Sequence Match ( AT5G14420.1 )
(BLAST)

001: MGTGNSKENW RQSSFRSTSA SSASPSSSSW ASQQSYPQYG AESYNYPPPP SYAQPPEYTQ PPPPLYSTQP YSAPSYSAPP SQSYGSDNKK RLERKYSKIS
101: DDYSSLEQVT EALARAGLES SNLIVGIDFT KSNEWTGARS FNRKSLHFIG SSPNPYEQAI TIIGRTLAAF DEDNLIPCYG FGDASTHDQD VFSFNSEDRF
201: CNGFEEVLSR YKEIVPQLKL AGPTSFAPII DMAMTIVEQS GGQYHVLVII ADGQVTRSVD TENGQLSPQE QKTVDAIVQA SKLPLSIVLV GVGDGPWDMM
301: REFDDNIPAR AFDNFQFVNF TEIMAKNKAQ SLKETEFALS ALMEIPQQYK ATIELNLLGR RNGYIPERFP LPPPMRGGSS SYNSPKPSRL PSFKPSVPPH
401: PTEGYHVRSS PVPPPTSSAS DNQLCPICLS NPKDMAFGCG HQTCCECGPD LQMCPICRAP IQTRIKLY

Arabidopsis Description

RGLG2E3 ubiquitin-protein ligase RGLG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY87]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.