Factsheet for VIT_12s0121g00080.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_15s0048g02070.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G08860.1	VIT_15s0048g02070.t01	AT2G45760.1	17631528

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0030g00600.t01	Wine grape	cytosol	85.55	97.88
VIT_14s0030g00550.t01	Wine grape	cytosol	78.49	97.7
VIT_14s0030g00540.t01	Wine grape	cytosol	73.45	95.41
VIT_14s0030g00500.t01	Wine grape	cytosol	94.96	95.12
VIT_14s0030g00570.t01	Wine grape	cytosol	97.82	87.26
VIT_18s0072g00560.t01	Wine grape	peroxisome	24.2	85.71
VIT_18s0001g15760.t01	Wine grape	cytosol, extracellular	13.78	85.42
KRH68626	Soybean	cytosol	69.75	71.55
Solyc10g045500.1.1	Tomato	cytosol	15.29	71.09
KRH68625	Soybean	cytosol	69.75	70.22
AT1G08860.1	Thale cress	cytosol	68.74	70.03
KRG96891	Soybean	cytosol	69.41	69.53
CDY06335	Canola	cytosol	67.56	68.95
Bra031645.1-P	Field mustard	cytosol	67.39	68.78
CDY22660	Canola	cytosol	67.06	68.67
GSMUA_Achr5P08050_001	Banana	cytosol	68.07	68.18
VIT_17s0000g00210.t01	Wine grape	cytosol	63.19	65.28
KXG21864	Sorghum	cytosol	63.87	64.96
TraesCS1B01G247700.2	Wheat	cytosol	63.7	64.24
TraesCS1D01G236200.1	Wheat	cytosol	63.7	64.24
TraesCS1A01G236100.4	Wheat	cytosol	63.53	64.07
Zm00001d037872_P001	Maize	plasma membrane	63.03	63.67
Os05t0373300-01	Rice	plasma membrane	63.36	63.26
TraesCS6B01G074300.2	Wheat	cytosol	62.52	63.05
TraesCS6D01G057900.2	Wheat	cytosol	62.02	62.54
HORVU6Hr1G010680.1	Barley	cytosol	61.01	61.11
TraesCS6A01G058200.2	Wheat	cytosol, plastid	62.35	58.61
HORVU1Hr1G058000.10	Barley	cytosol	63.53	57.19
TraesCS7A01G414000.1	Wheat	cytosol	46.39	46.94
VIT_01s0137g00460.t01	Wine grape	nucleus	16.97	22.85
VIT_00s0780g00040.t01	Wine grape	cytosol, mitochondrion, nucleus	15.8	21.51
VIT_17s0000g09640.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	15.63	21.48
VIT_04s0044g01620.t01	Wine grape	cytosol	12.77	20.71
VIT_14s0066g00290.t01	Wine grape	mitochondrion	15.97	20.61
VIT_19s0085g01000.t01	Wine grape	extracellular	12.94	20.0

Protein Annotations

EntrezGene:100250185	wikigene:100250185	EntrezGene:100250282	wikigene:100250282	EntrezGene:100262302	wikigene:100262302
EntrezGene:100263993	wikigene:100263993	Gene3D:2.60.40.150	MapMan:27.2.7	Gene3D:3.40.50.410	InterPro:BONZAI
InterPro:C2B_Copine	InterPro:C2_dom	InterPro:C2_domain_sf	ProteinID:CCB62629	ProteinID:CCB62629.1	InterPro:Copine
UniProt:F6I6R1	EMBL:FN596758	GO:GO:0003674	GO:GO:0005488	GO:GO:0005544	GO:GO:0005575
GO:GO:0008150	GO:GO:0008219	GO:GO:0008289	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0060548	InterPro:IPR000008	InterPro:IPR002035	InterPro:IPR035892	InterPro:IPR036465	EntrezGene:LOC100250185
wikigene:LOC100250185	EntrezGene:LOC100250282	wikigene:LOC100250282	EntrezGene:LOC100262302	wikigene:LOC100262302	EntrezGene:LOC100263993
wikigene:LOC100263993	PFAM:PF00168	PFAM:PF07002	PFscan:PS50004	PFscan:PS50234	PANTHER:PTHR10857
PANTHER:PTHR10857:SF108	SMART:SM00239	SMART:SM00327	SUPFAM:SSF49562	SUPFAM:SSF53300	UniParc:UPI0002108EB9
ArrayExpress:VIT_12s0121g00080	EnsemblPlantsGene:VIT_12s0121g00080	EnsemblPlants:VIT_12s0121g00080.t01	InterPro:VWF_A	RefSeq:XP_002265395	RefSeq:XP_002265395.2
RefSeq:XP_002266731	RefSeq:XP_002266731.1	RefSeq:XP_002268132	RefSeq:XP_002268132.1	RefSeq:XP_003633350	RefSeq:XP_003633350.1
RefSeq:XP_010657534.1	SEG:seg	InterPro:vWFA_dom_sf	:	:	:

Description

No Description!

Coordinates

chr12:+:11757139..11767617

Molecular Weight (calculated)

65367.0 Da

IEP (calculated)

5.900

GRAVY (calculated)

-0.117

Length

595 amino acids

Sequence
(BLAST)

001: MGGCFSDVRG GKQAVGVGLT GPSLPPMPTS NAALNDAVDD FFRARGIQPL FTQLELSLSG SNLRDRDIIS KSDPMVVAYT KKRDGTLEEL GRTEVIMNSL
101: DPAWIDKITV AYHFEIVQPL IFHVYDVDTK YYNLPVKTLK LNDQEFLGEG SCVLSEIVTK QGQSLTLDLH NRNGNRGLKN LGKLTVHAEE TVASRNAIEV
201: IFHCSHLENK DLFSKSDPFL RISRIVENGG SVPICKTEVV DNNLNPIWRP LCLTMQQFVS KDNPLVIECF DFNTSGNHVL IGKLQKSVAD LEKLHKQKTG
301: ASFILPSSAQ HGHEKVLKGQ LFVDQFCEKQ LYSFIDYVSS GFEFNFMVAV DFTASNGNPR NPDSLHYIDP SGRFNAYQQA IMEVGEVIQF YDSDRRFPAW
401: GFGGRTIDGT VSHCFNLNGS ASGVEVEGVQ GIMAAYASAL NHVALAGPTL FGQVINNAAE IARQSLSYNS RKYFVLLIIT DGVVTDLQET KDALVRASDL
501: PLSILIVGVG GADFKQMEIL DADNGCRLES STGRVATRDI VQFVPMREVR AGGQTSVVQA LLEELPGQFL TYMRSRDIKP GAVNIAQTSA SHPTI

Best Arabidopsis Sequence Match ( AT1G08860.1 )
(BLAST)

001: MGGCLSGDVK GGKQAIGGVQ QRPTSSTIAN NAAHNDAVDF FFRSRGQYPL FSQIELTLSA SNLLDCDITS KSDPMAVMYL RKKDGRLEEI GRTEVILNNL
101: NPKWIEKITV SFQFEAVQTL VFHVYDVDTR YHNVPVKTLK LKDQDFLGEG TCVLSEIMTR QNRTLTLTLT GNVRAGVNRN LGTLSIQAEE TVASKTVAEI
201: NFRCVNLDNK DLFSKSDPFL RISRVVETSA AVPICRTEVV DNNLNPMWRP VCLTMQQFGS KDTPLVIECL DFNTSGNHEL IGKTEKSVAE LERLCLQKEA
301: ANFVYPSLSH GRNKVLKGQL IVDRYVEKVQ YSFLDYISSG FELNFMVAVD FTASNGDPRT PSSLHYIDPS GRLNSYQQAI MEVGEVIQFY DSDKRFPAWG
401: FGGRTSDGSV SHAFNLNGAS YGDEVVGVEG IMVAYASALR NVSLAGPTLF SNVVDKAAHT ASQSLSQNSP KYFVLLIITD GVLTDMAGTV DALVRASDLP
501: LSVLIVGVGN TDFKQMEMLD ADNGRRLESS TGRIATRDIV QFVPMKDIHS GLVSVVQALL EELPGQFLTY VRSRKINPIG APAI

Arabidopsis Description

BON3Protein BONZAI 3 [Source:UniProtKB/Swiss-Prot;Acc:Q5XQC7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.