Factsheet for VIT_15s0048g02070.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_17s0000g00210.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45760.1	VIT_17s0000g00210.t01	AT5G07300.1	17631528

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH65133	Soybean	cytosol	48.3	47.22
KRH48228	Soybean	cytosol	46.02	45.25
Solyc01g091590.2.1	Tomato	cytosol	47.16	43.68
KRH77255	Soybean	cytosol	43.18	43.43
PGSC0003DMT400071403	Potato	cytosol	35.23	43.36
KRH28237	Soybean	cytosol	43.18	43.18
KRH48229	Soybean	cytosol	38.64	41.72
KRH65136	Soybean	cytosol	39.2	39.66
KRH00634	Soybean	cytosol	34.09	38.71
KRH65138	Soybean	cytosol	36.36	38.55
Bra007581.1-P	Field mustard	cytosol	39.2	36.9
Bra014450.1-P	Field mustard	cytosol	35.23	36.69
KRH65134	Soybean	cytosol	38.07	36.22
KRH48233	Soybean	cytosol	36.36	35.75
AT3G61190.2	Thale cress	cytosol	37.5	34.38
KRH00635	Soybean	cytosol	34.66	33.89
CDX74764	Canola	cytosol	38.64	33.83
KRH48231	Soybean	cytosol	36.36	33.68
AT2G45760.1	Thale cress	cytosol	39.2	33.33
Bra004936.1-P	Field mustard	cytosol	38.07	33.33
KRH65139	Soybean	cytosol	34.66	33.15
CDX89102	Canola	cytosol	34.66	33.15
CDY69632	Canola	cytosol, mitochondrion	39.2	32.7
CDY42491	Canola	cytosol	33.52	32.6
KRH48232	Soybean	cytosol	30.11	32.52
CDX95663	Canola	cytosol	37.5	32.51
CDY18902	Canola	cytosol	36.93	32.34
CDY27361	Canola	cytosol	36.93	32.34
CDX71760	Canola	cytosol, mitochondrion	38.64	32.23
Bra039316.1-P	Field mustard	cytosol	37.5	32.2
KRH48230	Soybean	cytosol	34.66	32.11
CDY37063	Canola	cytosol	36.93	31.71
Bra000402.1-P	Field mustard	cytosol	36.36	31.68
CDY53895	Canola	cytosol	36.36	31.68
KRH65137	Soybean	cytosol	33.52	30.89
KRH65135	Soybean	mitochondrion	28.98	22.37

Protein Annotations

EntrezGene:100248930	wikigene:100248930	Gene3D:2.60.40.150	MapMan:27.2.8	ProteinID:AFD97530	ProteinID:AFD97530.1
EMBL:AM466704	InterPro:C2_dom	InterPro:C2_domain_sf	ProteinID:CAN72571	ProteinID:CAN72571.1	ProteinID:CCB61329
ProteinID:CCB61329.1	UniProt:F6I312	EMBL:FN596739	InterPro:IPR000008	InterPro:IPR035892	EMBL:JQ658428
EntrezGene:LOC100248930	wikigene:LOC100248930	PFAM:PF00168	PANTHER:PTHR32246	PANTHER:PTHR32246:SF20	SMART:SM00239
SUPFAM:SSF49562	TIGR:TC63892	UniParc:UPI0001984E6D	ArrayExpress:VIT_15s0048g02070	EnsemblPlantsGene:VIT_15s0048g02070	EnsemblPlants:VIT_15s0048g02070.t01
unigene:Vvi.11364	RefSeq:XP_002271138	RefSeq:XP_002271138.1	:	:	:

Description

No Description!

Coordinates

chr15:-:16195864..16196634

Molecular Weight (calculated)

19461.4 Da

IEP (calculated)

9.757

GRAVY (calculated)

-0.267

Length

176 amino acids

Sequence
(BLAST)

001: MEAASGVVEI TVISGEDLRV NSRRPVKKNA FAVVRTDSKN YQMTRVDTEG GSYSTWNEKL VMNLPAHARF LTVEVHCKTS SGDRVIGTAR VPVSDFSGGS
101: TPESYLHFLS YRLRDDKGER NGIVNLSVRM KVPERMVPVM AAPPQRMWPE TVVGGWDCAG VVMGVPVRSS YRTVQV

Best Arabidopsis Sequence Match ( AT2G45760.1 )
(BLAST)

001: MSYSTFKRSL EIEVISAEGL KVDRKPLKKK TYSVVRIDEK SWASKVDELG GSYPIWKDRF DMEMPINASV RFISIEVYYR TSGSGRDKNV GYAKIPVTDF
101: MGGFAPQGHL NFLSYRLRDE YGDKCGIVNV SIMVKPDGND HKSSLPSSSF AVAPVDYAAC SWQATAAARN NQMWRPRTSS SMVSTAGYGG GRVVTGVPVW
201: CAYQRPS

Arabidopsis Description

BAP2BON1-associated protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q58FX0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.