CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70026
CDX78287
CDX81044
CDX98983
CDX98984

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45760.1	CDX70026	AT5G07300.1	17631528
AT2G45760.1	CDX78287	AT5G07300.1	17631528
AT2G45760.1	CDX81044	AT5G07300.1	17631528
AT2G45760.1	CDX98983	AT5G07300.1	17631528
AT2G45760.1	CDX98984	AT5G07300.1	17631528

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74764	Canola	cytosol	93.53	93.53
CDX95663	Canola	cytosol	77.11	76.35
CDY53895	Canola	cytosol	75.62	75.25
AT2G45760.1	Thale cress	cytosol	75.62	73.43
CDY37063	Canola	cytosol	71.64	70.24
CDY27361	Canola	cytosol	67.16	67.16
CDX71760	Canola	cytosol, mitochondrion	54.73	52.13
CDY69632	Canola	cytosol, mitochondrion	54.23	51.66
CDX89102	Canola	cytosol	45.77	50.0
CDY42491	Canola	cytosol	44.78	49.72
KRH48228	Soybean	cytosol	34.33	38.55
KRH77255	Soybean	cytosol	32.84	37.71
KRH28237	Soybean	cytosol	32.84	37.5
PGSC0003DMT400071403	Potato	cytosol	26.37	37.06
VIT_15s0048g02070.t01	Wine grape	cytosol	32.34	36.93
KRH65133	Soybean	cytosol	31.84	35.56
KRH00634	Soybean	cytosol	26.37	34.19
Solyc01g091590.2.1	Tomato	cytosol	31.34	33.16
KRH48229	Soybean	cytosol	26.37	32.52
KRH65134	Soybean	cytosol	29.35	31.89
KRH00635	Soybean	cytosol	26.37	29.44
KRH65136	Soybean	cytosol	24.38	28.16
KRH48233	Soybean	cytosol	24.38	27.37
KRH65138	Soybean	cytosol	21.89	26.51
KRH65139	Soybean	cytosol	23.38	25.54
KRH48230	Soybean	cytosol	19.9	21.05
KRH48231	Soybean	cytosol	18.91	20.0
KRH48232	Soybean	cytosol	15.92	19.63
KRH65137	Soybean	cytosol	17.91	18.85
KRH65135	Soybean	mitochondrion	17.41	15.35
CDY01978	Canola	plastid	3.98	4.52
CDY51153	Canola	cytosol	3.48	4.05
CDY54055	Canola	plastid	2.49	2.84

Protein Annotations

EnsemblPlants:CDY18902	EnsemblPlantsGene:GSBRNA2T00006093001	Gene3D:2.60.40.150	InterPro:C2_dom	InterPro:C2_domain_sf	InterPro:IPR000008
InterPro:IPR035892	PANTHER:PTHR32246	PANTHER:PTHR32246:SF20	PFAM:PF00168	ProteinID:CDY18902	ProteinID:CDY18902.1
SMART:SM00239	SUPFAM:SSF49562	UniParc:UPI0004EE3B7A	UniProt:A0A078G1P3	MapMan:27.2.8	:

Description

BnaC04g04480DBnaC04g04480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G1P3]

Coordinates

chrLK032090:+:208622..209227

Molecular Weight (calculated)

22010.5 Da

IEP (calculated)

9.358

GRAVY (calculated)

-0.319

Length

201 amino acids

Sequence
(BLAST)

001: MSYSTMQRSL EIELISAEGL KVDRKPVKRK TFCVVKIDQK TRVCKLDESG GSCPTWKDKI EMEMPINGSV RFISIEVLSR TSGGAEKNVG YAKIPVTDFM
101: GGFAPQGHLN FLSYRLRDEY GDKSGILNVS IMVKPDGNNI KYSTPSPLVV ATRDYAACSS QAAVNGQMWR PKTSSSMAVG AGYGGREVTG VPVWCTYQQS
201: S

Best Arabidopsis Sequence Match ( AT2G45760.1 )
(BLAST)

001: MSYSTFKRSL EIEVISAEGL KVDRKPLKKK TYSVVRIDEK SWASKVDELG GSYPIWKDRF DMEMPINASV RFISIEVYYR TSGSGRDKNV GYAKIPVTDF
101: MGGFAPQGHL NFLSYRLRDE YGDKCGIVNV SIMVKPDGND HKSSLPSSSF AVAPVDYAAC SWQATAAARN NQMWRPRTSS SMVSTAGYGG GRVVTGVPVW
201: CAYQRPS

Arabidopsis Description

BAP2BON1-associated protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q58FX0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.