CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70026
CDX78287
CDX81044
CDX98983
CDX98984

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45760.1	CDX70026	AT5G07300.1	17631528
AT2G45760.1	CDX78287	AT5G07300.1	17631528
AT2G45760.1	CDX81044	AT5G07300.1	17631528
AT2G45760.1	CDX98983	AT5G07300.1	17631528
AT2G45760.1	CDX98984	AT5G07300.1	17631528

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53895	Canola	cytosol	96.06	96.53
CDX74764	Canola	cytosol	77.34	78.11
CDY18902	Canola	cytosol	76.35	77.11
CDY37063	Canola	cytosol	74.88	74.15
AT2G45760.1	Thale cress	cytosol	74.38	72.95
CDY27361	Canola	cytosol	71.92	72.64
CDY42491	Canola	cytosol	43.84	49.17
CDX71760	Canola	cytosol, mitochondrion	50.25	48.34
CDY69632	Canola	cytosol, mitochondrion	49.75	47.87
CDX89102	Canola	cytosol	43.35	47.83
KRH48228	Soybean	cytosol	37.93	43.02
KRH77255	Soybean	cytosol	36.45	42.29
KRH28237	Soybean	cytosol	36.45	42.05
KRH65133	Soybean	cytosol	35.47	40.0
PGSC0003DMT400071403	Potato	cytosol	28.08	39.86
VIT_15s0048g02070.t01	Wine grape	cytosol	32.51	37.5
KRH00634	Soybean	cytosol	27.09	35.48
Solyc01g091590.2.1	Tomato	cytosol	33.0	35.26
KRH48229	Soybean	cytosol	26.11	32.52
KRH65134	Soybean	cytosol	28.57	31.35
KRH00635	Soybean	cytosol	27.09	30.56
KRH65136	Soybean	cytosol	23.65	27.59
KRH48233	Soybean	cytosol	24.14	27.37
KRH65139	Soybean	cytosol	23.65	26.09
KRH65138	Soybean	cytosol	21.18	25.9
KRH48230	Soybean	cytosol	19.7	21.05
KRH48232	Soybean	cytosol	16.75	20.86
KRH48231	Soybean	cytosol	18.23	19.47
KRH65137	Soybean	cytosol	17.73	18.85
KRH65135	Soybean	mitochondrion	18.23	16.23
CDY01978	Canola	plastid	3.94	4.52
CDY51153	Canola	cytosol	2.96	3.47
CDY54055	Canola	plastid	2.96	3.41

Protein Annotations

EnsemblPlants:CDX95663	EnsemblPlantsGene:GSBRNA2T00101548001	Gene3D:2.60.40.150	InterPro:C2_dom	InterPro:C2_domain_sf	InterPro:IPR000008
InterPro:IPR035892	PANTHER:PTHR32246	PANTHER:PTHR32246:SF20	PFAM:PF00168	ProteinID:CDX95663	ProteinID:CDX95663.1
SEG:seg	SMART:SM00239	SUPFAM:SSF49562	UniParc:UPI0004EEA80C	MapMan:27.2.8	:

Description

BnaC03g25440D

Coordinates

chrLK031890:-:515689..516300

Molecular Weight (calculated)

22049.6 Da

IEP (calculated)

9.897

GRAVY (calculated)

-0.256

Length

203 amino acids

Sequence
(BLAST)

001: MTYSTMKRSL EIELISAEGL KVDRKPVKRK TFCIVRIDQK SQACKPDELG GSYPVWKDKI EMDMAMNGSV RFISIEVLYK TSGGAEKSVG LAKIPVTDFM
101: GGFAPQGHLN FLSYRLRDEY GDKSGIVNVS IMVKPDGNGL KYSSPSMAAP ADYAACSSQA AAAANGQMWR PPRTSSSMAL TTGYRGRVVV TGVPVWGAYP
201: RSS

Best Arabidopsis Sequence Match ( AT2G45760.1 )
(BLAST)

001: MSYSTFKRSL EIEVISAEGL KVDRKPLKKK TYSVVRIDEK SWASKVDELG GSYPIWKDRF DMEMPINASV RFISIEVYYR TSGSGRDKNV GYAKIPVTDF
101: MGGFAPQGHL NFLSYRLRDE YGDKCGIVNV SIMVKPDGND HKSSLPSSSF AVAPVDYAAC SWQATAAARN NQMWRPRTSS SMVSTAGYGG GRVVTGVPVW
201: CAYQRPS

Arabidopsis Description

BAP2BON1-associated protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q58FX0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.