Factsheet for VIT_14s0030g00600.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_15s0048g02070.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G08860.1	VIT_15s0048g02070.t01	AT2G45760.1	17631528

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0030g00550.t01	Wine grape	cytosol	88.85	96.65
VIT_14s0030g00540.t01	Wine grape	cytosol	83.08	94.32
VIT_12s0121g00080.t01	Wine grape	cytosol	97.88	85.55
VIT_18s0072g00560.t01	Wine grape	peroxisome	27.31	84.52
VIT_18s0001g15760.t01	Wine grape	cytosol, extracellular	15.58	84.38
VIT_14s0030g00500.t01	Wine grape	cytosol	95.77	83.84
VIT_14s0030g00570.t01	Wine grape	cytosol	97.31	75.86
Solyc10g045500.1.1	Tomato	cytosol	17.12	69.53
KRH68626	Soybean	cytosol	71.54	64.14
KRH68625	Soybean	cytosol	71.35	62.77
KRG96891	Soybean	cytosol	70.96	62.12
AT1G08860.1	Thale cress	cytosol	69.23	61.64
GSMUA_Achr5P08050_001	Banana	cytosol	70.0	61.28
CDY06335	Canola	cytosol	67.88	60.55
CDY22660	Canola	cytosol	67.5	60.41
Bra031645.1-P	Field mustard	cytosol	67.69	60.38
VIT_17s0000g00210.t01	Wine grape	cytosol	64.81	58.51
KXG21864	Sorghum	cytosol	65.38	58.12
TraesCS1D01G236200.1	Wheat	cytosol	65.19	57.46
TraesCS1B01G247700.2	Wheat	cytosol	65.19	57.46
TraesCS1A01G236100.4	Wheat	cytosol	65.0	57.29
Zm00001d037872_P001	Maize	plasma membrane	64.62	57.05
Os05t0373300-01	Rice	plasma membrane	65.19	56.88
HORVU6Hr1G010680.1	Barley	cytosol	64.81	56.73
TraesCS6B01G074300.2	Wheat	cytosol	63.85	56.27
TraesCS6D01G057900.2	Wheat	cytosol	63.46	55.93
TraesCS6A01G058200.2	Wheat	cytosol, plastid	64.04	52.61
HORVU1Hr1G058000.10	Barley	cytosol	64.81	50.98
TraesCS7A01G414000.1	Wheat	cytosol	50.58	44.73
VIT_01s0137g00460.t01	Wine grape	nucleus	17.88	21.04
VIT_04s0044g01620.t01	Wine grape	cytosol	14.42	20.44
VIT_00s0780g00040.t01	Wine grape	cytosol, mitochondrion, nucleus	17.12	20.37
VIT_17s0000g09640.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	16.54	19.86
VIT_14s0066g00290.t01	Wine grape	mitochondrion	17.31	19.52
VIT_19s0085g01000.t01	Wine grape	extracellular	14.23	19.22

Protein Annotations

Gene3D:2.60.40.150	MapMan:27.2.7	Gene3D:3.40.50.410	InterPro:BONZAI	InterPro:C2B_Copine	InterPro:C2_dom
InterPro:C2_domain_sf	ProteinID:CCB58151	ProteinID:CCB58151.1	InterPro:Copine	UniProt:F6HTZ0	EMBL:FN596249
GO:GO:0003674	GO:GO:0005488	GO:GO:0005544	GO:GO:0008150	GO:GO:0008219	GO:GO:0008289
GO:GO:0009987	GO:GO:0060548	InterPro:IPR000008	InterPro:IPR002035	InterPro:IPR035892	InterPro:IPR036465
PFAM:PF00168	PFAM:PF07002	PFscan:PS50004	PFscan:PS50234	PANTHER:PTHR10857	PANTHER:PTHR10857:SF108
SMART:SM00239	SMART:SM00327	SUPFAM:SSF49562	SUPFAM:SSF53300	UniParc:UPI000210A180	ArrayExpress:VIT_14s0030g00600
EnsemblPlantsGene:VIT_14s0030g00600	EnsemblPlants:VIT_14s0030g00600.t01	InterPro:VWF_A	SEG:seg	InterPro:vWFA_dom_sf	:

Description

No Description!

Coordinates

chr14:-:4698792..4705450

Molecular Weight (calculated)

57724.9 Da

IEP (calculated)

5.889

GRAVY (calculated)

-0.094

Length

520 amino acids

Sequence
(BLAST)

001: MVVAYTKKRD GTLEELGRTE VIMNSLDPAW IEKITVAYHF EIVQPLIFHV YDVDTKYYNL PVKTLKLNDQ EFLGEGSCVL SEIVTKQGQS LTLDLHNRNG
101: NRGLKNLGKL TVHAEETVAS RNAIEVIFHC SHLENKDLFS KSDPFLRISR IVENGGSVPI CKTEVVDNNL NPIWRPLCLT MQQFVSKDNP LVIECFDFNS
201: SGNHVLIGKL QKSVADLEKL HKQKTGASFI LPSSAQHGHE KVLKGQLFVD QFCEKQLYSF IDYVSNGFEF NFMVAVDFTA SNGNPRTPDS LHYIDPSGRF
301: NAYQQAIMEV GEVIQFYDSD RRFPAWGFGG RTIDGTVSHC FNLNGSASSI EVEGVQGIMA AYASALNHVA LAGPTLFGQV INNAAEIARQ SLSYNIRKYF
401: VLLIITDGVV TDLQETKDAL VRASDLPLSI LIVGVGGADF KQMEILDADN SCWLESSTGR VATRDIVQFV PMREVRGGQT SVVQALLEEL PGQFLTYMRS
501: RDIKPNAVNI AQTSASHATI

Best Arabidopsis Sequence Match ( AT1G08860.1 )
(BLAST)

001: MGGCLSGDVK GGKQAIGGVQ QRPTSSTIAN NAAHNDAVDF FFRSRGQYPL FSQIELTLSA SNLLDCDITS KSDPMAVMYL RKKDGRLEEI GRTEVILNNL
101: NPKWIEKITV SFQFEAVQTL VFHVYDVDTR YHNVPVKTLK LKDQDFLGEG TCVLSEIMTR QNRTLTLTLT GNVRAGVNRN LGTLSIQAEE TVASKTVAEI
201: NFRCVNLDNK DLFSKSDPFL RISRVVETSA AVPICRTEVV DNNLNPMWRP VCLTMQQFGS KDTPLVIECL DFNTSGNHEL IGKTEKSVAE LERLCLQKEA
301: ANFVYPSLSH GRNKVLKGQL IVDRYVEKVQ YSFLDYISSG FELNFMVAVD FTASNGDPRT PSSLHYIDPS GRLNSYQQAI MEVGEVIQFY DSDKRFPAWG
401: FGGRTSDGSV SHAFNLNGAS YGDEVVGVEG IMVAYASALR NVSLAGPTLF SNVVDKAAHT ASQSLSQNSP KYFVLLIITD GVLTDMAGTV DALVRASDLP
501: LSVLIVGVGN TDFKQMEMLD ADNGRRLESS TGRIATRDIV QFVPMKDIHS GLVSVVQALL EELPGQFLTY VRSRKINPIG APAI

Arabidopsis Description

BON3Protein BONZAI 3 [Source:UniProtKB/Swiss-Prot;Acc:Q5XQC7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.