Factsheet for VIT_14s0030g00500.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_15s0048g02070.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G08860.1	VIT_15s0048g02070.t01	AT2G45760.1	17631528

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0030g00540.t01	Wine grape	cytosol	74.24	96.29
VIT_14s0030g00600.t01	Wine grape	cytosol	83.84	95.77
VIT_14s0030g00550.t01	Wine grape	cytosol	76.94	95.61
VIT_12s0121g00080.t01	Wine grape	cytosol	95.12	94.96
VIT_18s0072g00560.t01	Wine grape	peroxisome	24.92	88.1
VIT_18s0001g15760.t01	Wine grape	cytosol, extracellular	14.14	87.5
VIT_14s0030g00570.t01	Wine grape	cytosol	94.95	84.56
KRH68626	Soybean	cytosol	68.69	70.34
Solyc10g045500.1.1	Tomato	cytosol	14.98	69.53
KRH68625	Soybean	cytosol	68.52	68.87
AT1G08860.1	Thale cress	cytosol	67.34	68.49
KRG96891	Soybean	cytosol	68.01	68.01
GSMUA_Achr5P08050_001	Banana	cytosol	67.51	67.51
CDY06335	Canola	cytosol	66.16	67.41
Bra031645.1-P	Field mustard	cytosol	65.99	67.24
CDY22660	Canola	cytosol	65.66	67.13
KXG21864	Sorghum	cytosol	65.15	66.15
VIT_17s0000g00210.t01	Wine grape	cytosol	63.3	65.28
TraesCS1B01G247700.2	Wheat	cytosol	64.14	64.58
TraesCS1A01G236100.4	Wheat	cytosol	63.97	64.41
TraesCS1D01G236200.1	Wheat	cytosol	63.8	64.24
Zm00001d037872_P001	Maize	plasma membrane	63.47	64.01
Os05t0373300-01	Rice	plasma membrane	64.14	63.93
TraesCS6B01G074300.2	Wheat	cytosol	62.96	63.39
TraesCS6D01G057900.2	Wheat	cytosol	62.63	63.05
HORVU6Hr1G010680.1	Barley	cytosol	61.62	61.62
TraesCS6A01G058200.2	Wheat	cytosol, plastid	62.96	59.08
HORVU1Hr1G058000.10	Barley	cytosol	63.97	57.49
TraesCS7A01G414000.1	Wheat	cytosol	46.8	47.28
VIT_01s0137g00460.t01	Wine grape	nucleus	16.67	22.4
VIT_17s0000g09640.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	15.49	21.25
VIT_00s0780g00040.t01	Wine grape	cytosol, mitochondrion, nucleus	15.49	21.05
VIT_04s0044g01620.t01	Wine grape	cytosol	12.63	20.44
VIT_14s0066g00290.t01	Wine grape	mitochondrion	15.66	20.17
VIT_19s0085g01000.t01	Wine grape	extracellular	12.63	19.48

Protein Annotations

EntrezGene:100241932	wikigene:100241932	EntrezGene:100247065	wikigene:100247065	Gene3D:2.60.40.150	MapMan:27.2.7
InterPro:BONZAI	InterPro:C2B_Copine	InterPro:C2_dom	InterPro:C2_domain_sf	ProteinID:CCB58156	ProteinID:CCB58156.1
InterPro:Copine	UniProt:F6HTZ5	EMBL:FN596249	GO:GO:0003674	GO:GO:0005488	GO:GO:0005544
GO:GO:0005575	GO:GO:0008150	GO:GO:0008219	GO:GO:0008289	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0060548	InterPro:IPR000008	InterPro:IPR002035	InterPro:IPR035892	InterPro:IPR036465
EntrezGene:LOC100241932	wikigene:LOC100241932	EntrezGene:LOC100247065	wikigene:LOC100247065	PFAM:PF00168	PFAM:PF07002
PFscan:PS50004	PANTHER:PTHR10857	PANTHER:PTHR10857:SF108	SMART:SM00239	SMART:SM00327	SUPFAM:SSF49562
SUPFAM:SSF53300	UniParc:UPI000210806A	ArrayExpress:VIT_14s0030g00500	EnsemblPlantsGene:VIT_14s0030g00500	EnsemblPlants:VIT_14s0030g00500.t01	InterPro:VWF_A
unigene:Vvi.17638	RefSeq:XP_002266991	RefSeq:XP_002266991.2	RefSeq:XP_002267420	RefSeq:XP_002267420.1	SEG:seg
InterPro:vWFA_dom_sf	:	:	:	:	:

Description

No Description!

Coordinates

chr14:-:4400294..4409517

Molecular Weight (calculated)

65084.9 Da

IEP (calculated)

6.059

GRAVY (calculated)

-0.074

Length

594 amino acids

Sequence
(BLAST)

001: MGGCFSDVRG GKQAVGVGLT GPSMPPMPTT DAALNDAVDH FFRARGLHQL FTHLELSLSG SGLRDRDIIS KSDPMVVVYT KKRDGTLEEL GRTEVIMNSL
101: DPAWIKKITV AYHFEIVQPL IFHVYDVDTK YYNLPVKMLK LNDQEFLGEG GCVLSEIVTK QGQSLTLDLH NRNGNRGLKN LGKLTVHAEE TVSSRNAIEV
201: IFHCSCLENK DLFSKSDPFL RISRIVENGG SVPICKTEVV DNNLNPIWRP LCLTMQQFVS KDNPLVIECF DFNSSGNHVL IGKLQKSVAD LEKLHKQKTG
301: ASFILPSSAQ HGHEKVLKGQ LFVDQFCEKQ LHSFIDYVSS GFELNFMVAV DFTASNGNPR TPDSLHYIDP SGQFNAYQQA IMEVGEVIQF YDTDRRFPAW
401: GFGGRTIDGT ISHCFNLNGS ASGVEVEGVQ GIMAAYASAL NHVALAGPTL FGQVINNAAE IAGQSLSYNS CKYFVLLIIT DGVLTDLQET KDALVRASDL
501: PLSILIVGVG GADFKQMEIL DADNGCPLES STGRVATRDI VQFVPMREVR GGQTSVVQAL LQELPGQFLT YMRSRDIKPS AVNIAQTSAS HATI

Best Arabidopsis Sequence Match ( AT1G08860.1 )
(BLAST)

001: MGGCLSGDVK GGKQAIGGVQ QRPTSSTIAN NAAHNDAVDF FFRSRGQYPL FSQIELTLSA SNLLDCDITS KSDPMAVMYL RKKDGRLEEI GRTEVILNNL
101: NPKWIEKITV SFQFEAVQTL VFHVYDVDTR YHNVPVKTLK LKDQDFLGEG TCVLSEIMTR QNRTLTLTLT GNVRAGVNRN LGTLSIQAEE TVASKTVAEI
201: NFRCVNLDNK DLFSKSDPFL RISRVVETSA AVPICRTEVV DNNLNPMWRP VCLTMQQFGS KDTPLVIECL DFNTSGNHEL IGKTEKSVAE LERLCLQKEA
301: ANFVYPSLSH GRNKVLKGQL IVDRYVEKVQ YSFLDYISSG FELNFMVAVD FTASNGDPRT PSSLHYIDPS GRLNSYQQAI MEVGEVIQFY DSDKRFPAWG
401: FGGRTSDGSV SHAFNLNGAS YGDEVVGVEG IMVAYASALR NVSLAGPTLF SNVVDKAAHT ASQSLSQNSP KYFVLLIITD GVLTDMAGTV DALVRASDLP
501: LSVLIVGVGN TDFKQMEMLD ADNGRRLESS TGRIATRDIV QFVPMKDIHS GLVSVVQALL EELPGQFLTY VRSRKINPIG APAI

Arabidopsis Description

BON3Protein BONZAI 3 [Source:UniProtKB/Swiss-Prot;Acc:Q5XQC7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.