Factsheet for VIT_19s0085g01000.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 3
mitochondrion 1
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43661	Soybean	cytosol	67.53	77.38
CDX79314	Canola	cytosol, plastid	62.08	63.06
CDX67997	Canola	cytosol	61.82	62.96
KRH13149	Soybean	cytosol, plastid	68.05	62.83
GSMUA_Achr7P03440_001	Banana	cytosol	50.65	62.3
CDX99619	Canola	cytosol	10.91	61.76
KRH44829	Soybean	nucleus, plastid	68.05	61.65
GSMUA_AchrUn_...	Banana	mitochondrion	66.49	61.54
Zm00001d035211_P001	Maize	mitochondrion	64.16	61.14
TraesCS7A01G308900.1	Wheat	mitochondrion	63.64	61.1
Os08t0135400-01	Rice	plasma membrane	63.64	61.1
CDY50776	Canola	cytosol	11.69	60.81
Solyc05g053870.2.1	Tomato	plastid	70.65	60.31
CDX87387	Canola	plastid	62.86	60.2
TraesCS7D01G305600.1	Wheat	mitochondrion	63.38	60.1
EES13310	Sorghum	mitochondrion	63.64	60.05
CDX88533	Canola	plastid	62.6	59.8
Bra035112.1-P	Field mustard	plastid	62.34	59.7
AT1G79380.1	Thale cress	mitochondrion	62.08	59.6
VIT_04s0044g01620.t01	Wine grape	cytosol	56.1	58.86
PGSC0003DMT400040712	Potato	nucleus, plastid	70.91	56.41
TraesCS7B01G208900.1	Wheat	mitochondrion	60.26	55.24
VIT_17s0000g09640.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	59.22	52.66
VIT_01s0137g00460.t01	Wine grape	nucleus	56.88	49.55
VIT_00s0780g00040.t01	Wine grape	cytosol, mitochondrion, nucleus	55.58	48.97
VIT_14s0066g00290.t01	Wine grape	mitochondrion	58.18	48.59
VIT_18s0001g15760.t01	Wine grape	cytosol, extracellular	7.53	30.21
VIT_18s0072g00560.t01	Wine grape	peroxisome	12.47	28.57
VIT_14s0030g00540.t01	Wine grape	cytosol	19.22	16.16
VIT_14s0030g00550.t01	Wine grape	cytosol	19.22	15.48
VIT_14s0030g00600.t01	Wine grape	cytosol	19.22	14.23
VIT_17s0000g00210.t01	Wine grape	cytosol	19.48	13.02
VIT_12s0121g00080.t01	Wine grape	cytosol	20.0	12.94
VIT_14s0030g00500.t01	Wine grape	cytosol	19.48	12.63
VIT_14s0030g00570.t01	Wine grape	cytosol	19.48	11.24

Protein Annotations

EntrezGene:100250108	wikigene:100250108	MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	ProteinID:CCB48971
ProteinID:CCB48971.1	InterPro:Copine	UniProt:F6H9S8	EMBL:FN595503	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	InterPro:IPR001841	InterPro:IPR002035
InterPro:IPR013083	InterPro:IPR036465	EntrezGene:LOC100250108	wikigene:LOC100250108	PFAM:PF07002	PFAM:PF13920
PFscan:PS50089	PANTHER:PTHR10857	PANTHER:PTHR10857:SF47	SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300
SUPFAM:SSF57850	TIGR:TC59711	TIGR:TC67355	UniParc:UPI0002108A20	ArrayExpress:VIT_19s0085g01000	EnsemblPlantsGene:VIT_19s0085g01000
EnsemblPlants:VIT_19s0085g01000.t01	InterPro:VWF_A	unigene:Vvi.10499	RefSeq:XP_002265556	RefSeq:XP_002265556.2	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:	:	:

Description

No Description!

Coordinates

chr19:-:23508849..23515147

Molecular Weight (calculated)

42148.3 Da

IEP (calculated)

7.132

GRAVY (calculated)

-0.239

Length

385 amino acids

Sequence
(BLAST)

001: MSFEVGKLVS GYSYCTFYVS MCVPKVTNAL RESGLESSNL IIGIDFTKSN EWTGKASFNN RSLHAIGDTP NPYEKAISII GKTLAPFDED NLIPCFGFGD
101: ATTHDSEVFS FHDDRSPCHG FEEVLACYKR IVPNLQLSGP TSYAPVVEAA IDIVEKSGGQ YHVLVIIADG QVTRSVNAND KELSPQEEKT INSIVTASSY
201: PLSIILVGVG DGPWDDMKKF DDKIPARGFD NFQFVNFTAI MSKNASPSEK ETAFALAALM EIPIQYKATV EFGILGRVTG KAKKVVPRPP PASYARHAPP
301: PYAMPYGMPS HQPSNLSSRM PSRMPSRQLS NTRDEGNQAC PICLTSVKDM AFGCGHMTCR ECASKVSNCP ICREPIRNRL RVYTG

Best Arabidopsis Sequence Match ( AT1G79380.1 )
(BLAST)

001: MTMGNFLKRF GSGKSRSSRN MTLGTTSSQS HEPSPSDPSL SLADNTNATK KKYALIPDRF SSLDQVSKAL REAGLESSNL ILGVDFTKSN EWTGKTSFDG
101: KCLHALGETS NPYEKAIFVI GQTLAPFDED NLIPCFGFGD STTHDEEVFG FHSDNSPCHG FEEVLACYKR IAPNLRLSGP TSYGPLIDAA VDIVEKNNGQ
201: FHVLVIVADG QVTRGTDMAE GELSQQEKTT IDAIVNASSY ALSIVLVGVG DGPWEDMRKF DDKIPKREFD NFQFVNFTEI MTRNSPESAK ETAFALAALM
301: EIPFQYQAAI ELRLLGKQTG LAKTIVPRPP PIPYTPPTNA ELPSTASPAS PEQTQSCPIC LTNRKDVAFS CGHMTCGDCG SKISNCPICR VRITNRLKLY
401: T

Arabidopsis Description

RGLG4E3 ubiquitin-protein ligase RGLG4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAL0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.