Factsheet for Zm00001d036831_P006

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG20338	Sorghum	nucleus	88.43	90.6
Zm00001d046554_P003	Maize	cytosol, plastid	87.55	90.11
Os06t0608800-02	Rice	nucleus	81.44	83.45
TraesCS7B01G283200.1	Wheat	cytosol	78.82	79.17
TraesCS7A01G381300.1	Wheat	plastid	78.17	78.34
TraesCS7D01G377600.1	Wheat	plastid	77.95	78.12
GSMUA_Achr2P05470_001	Banana	nucleus	61.35	75.13
TraesCS7A01G381200.1	Wheat	cytosol, plastid	71.4	74.15
TraesCS7D01G377500.1	Wheat	plastid	72.49	73.13
TraesCS7B01G283100.1	Wheat	cytosol	70.31	72.69
KRH07106	Soybean	cytosol, plastid	39.96	62.89
Zm00001d048784_P001	Maize	cytosol	41.92	62.34
VIT_00s0780g00040.t01	Wine grape	cytosol, mitochondrion, nucleus	53.93	56.52
Zm00001d042437_P005	Maize	cytosol	56.55	54.87
Zm00001d006136_P001	Maize	cytosol	11.35	53.61
Zm00001d035211_P001	Maize	mitochondrion	45.63	51.73
Zm00001d012101_P002	Maize	mitochondrion	56.55	50.98
Zm00001d024705_P001	Maize	cytosol	9.61	46.81
KRH07102	Soybean	cytosol	14.19	46.43
Zm00001d011821_P007	Maize	cytosol	43.23	46.15
Zm00001d041073_P001	Maize	endoplasmic reticulum, golgi, vacuole	53.93	45.66
Zm00001d034150_P001	Maize	cytosol	16.81	45.56
CDY49067	Canola	extracellular	14.85	45.33
Zm00001d005369_P001	Maize	mitochondrion	12.01	45.08
Zm00001d041244_P001	Maize	extracellular	10.48	44.86
Bra012681.1-P	Field mustard	cytosol	8.95	36.61
Bra018339.1-P	Field mustard	cytosol	11.14	34.46
CDY03984	Canola	cytosol	15.28	23.57
Zm00001d037872_P001	Maize	plasma membrane	21.4	16.64
Zm00001d016615_P002	Maize	plasma membrane	17.69	14.89

Protein Annotations

EnsemblPlants:Zm00001d036831_P006	EnsemblPlants:Zm00001d036831_T006	EnsemblPlantsGene:Zm00001d036831	GO:GO:0003674	GO:GO:0003824	GO:GO:0016874
InterPro:Copine	InterPro:IPR002035	InterPro:IPR036465	InterPro:VWF_A	InterPro:vWFA_dom_sf	PANTHER:PTHR10857
PANTHER:PTHR10857:SF28	PFAM:PF07002	ProteinID:AQK82240.1	ProteinID:AQK82245.1	SEG:seg	SMART:SM00327
SUPFAM:SSF53300	UniParc:UPI000842429D	UniProt:A0A1D6LS17	MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	:

Description

E3 ubiquitin-protein ligase RGLG1

Coordinates

chr6:+:103112004..103116490

Molecular Weight (calculated)

50770.3 Da

IEP (calculated)

6.295

GRAVY (calculated)

-0.503

Length

458 amino acids

Sequence
(BLAST)

001: MGQKDSKPSH GYGYSSYDYG SASSGYTSRN TGNSSSSYSV RYAPSSENSV QPETHARLQR KYSKIGDDYR SLSQVTEALA QAGLESSNLI VGIDFTKSNE
101: WTGKISFNRR CLHDIGNTPN PYEQAISIIG RTLSAFDEDN LIPCFGFGDA STHDQEVFSF YPENRPCNGF EEALDRYREI VPTLRLAGPT SFAPMIETAI
201: GIVDSTGGQY HVLLIIADGQ VTRSVDTQSG QLSPQERDTI DAIVRASQFP LSIVLVGVGD GPWDMMHQFD DNIPARSFDN FQFVNFTEIM SKSIAADRKE
301: AEFALSALME IPTQYKATID LQLLGRRQRI TPRIALPPPT RTAYSRSSSF SQQSGVYSRS SSFDQQTSGA SQQRSESLKQ QKKPAAPKRP DTYASERALE
401: DRILCPICMY KSKDLAFGCG HQAVYIHVHA DLLRMREKFG ALPSVPAEHN HEDQALLI

Best Arabidopsis Sequence Match ( AT3G01650.1 )
(BLAST)

001: MGGGNSKEES SSPSSSSWAS HQSYPQYGPD SYNYPPPPTY APAPSPAPAP APVPAPSPAS SYGPQYSQEG YASQPNNPPP PTYAPAPSPA SSYGHQYSQE
101: GYASAASQPN YPPPPSQSQV ADRKKFDRRY SKISDNYSSL LQVSEALGRA GLESSNLIVG IDFTKSNEWT GAKSFNRKSL HHLSNTPNPY EQAITIIGRT
201: LAAFDEDNLI PCYGFGDAST HDQDVFSFYP EGRFCNGFEE VLARYREIVP QLKLAGPTSF APIIEMAMTV VEQSSGQYHV LVIIADGQVT RSVDTEHGRL
301: SPQEQKTVDA IVKASTLPLS IVLVGVGDGP WDMMQEFDDN IPARAFDNFQ FVNFTEIMSK NKDQSRKETE FALSALMEIP PQYKATIELN LLGVRNGNIP
401: QRIPLPPPVQ SGSSFSSSRI PNFEPSVPPY PFESKQMSSA DDIQLCPICL SNPKNMAFGC GHQTCCECGP DLKVCPICRA PIQTRIKLY

Arabidopsis Description

RGLG1E3 ubiquitin-protein ligase RGLG1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SS90]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.