Factsheet for TraesCS5B01G371300.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole

Predictor Summary:

plastid 1
endoplasmic reticulum 4
extracellular 3
vacuole 4
plasma membrane 3
golgi 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, vacuole
Any Predictor:	mitochondrion, secretory
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	mitochondrion
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G378400.2	Wheat	endoplasmic reticulum, extracellular	95.9	93.54
TraesCS5A01G368900.1	Wheat	endoplasmic reticulum, extracellular	90.54	90.82
HORVU5Hr1G091920.4	Barley	endoplasmic reticulum	89.59	80.23
EER98488	Sorghum	endoplasmic reticulum, golgi	67.51	68.37
Zm00001d005369_P001	Maize	mitochondrion	22.08	57.38
TraesCS7B01G134400.1	Wheat	cytosol	49.53	39.35
TraesCS3B01G566800.1	Wheat	cytosol	47.0	39.31
TraesCS7B01G208900.1	Wheat	mitochondrion	48.58	36.67
TraesCS7B01G283100.1	Wheat	cytosol	50.47	36.12
TraesCS7B01G283200.1	Wheat	cytosol	51.1	35.53
TraesCS3B01G449200.1	Wheat	cytosol	51.42	34.9
TraesCS5B01G111900.1	Wheat	cytosol	23.03	30.29
TraesCS3B01G566700.1	Wheat	cytosol	46.06	30.04
TraesCS1B01G247700.2	Wheat	cytosol	23.66	12.71
TraesCS6B01G074300.2	Wheat	cytosol	23.66	12.71
TraesCS6B01G235200.1	Wheat	plastid	21.45	11.79

Protein Annotations

EnsemblPlants:TraesCS5B01G371300.1	EnsemblPlantsGene:TraesCS5B01G371300	InterPro:Copine	InterPro:IPR036465	InterPro:vWFA_dom_sf	PANTHER:PTHR10857
PANTHER:PTHR10857:SF68	PFAM:PF07002	SignalP:SignalP-noTM	SUPFAM:SSF53300	MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2

Description

No Description!

Coordinates

chr5B:+:549969896..549971954

Molecular Weight (calculated)

34395.7 Da

IEP (calculated)

5.186

GRAVY (calculated)

-0.171

Length

317 amino acids

Sequence
(BLAST)

001: MILSAFLLLC CAVATWTVSP AKSRQSESPS SEMGADRQAY ATLDQVKAAL QRVGLESSNL IIGVDFTKSN QWTGKRCFAG RSLHDLGAGP NPYEEAIGIV
101: GDTLSAFDED NAIPCFGFGD TSTHDQGVFS FYGDGRPCAG VPEALLRYRE IAATVQLSGP TSLAPIIEAA MGIVQRSGHQ YHILLIIADG QVPRGCGAHR
201: ASSPDESRSE NYMEERTLQA LIHASHFPLS IVLVGVGDGP WDDDQMRFHD GRRRFDNFQF VDFTKIMSAE MSRAEKGERF ALEALEKIPS QYAAIVSQRI
301: SDLAAMAPAR TPLPPPS

Best Arabidopsis Sequence Match ( AT3G01650.1 )
(BLAST)

001: MGGGNSKEES SSPSSSSWAS HQSYPQYGPD SYNYPPPPTY APAPSPAPAP APVPAPSPAS SYGPQYSQEG YASQPNNPPP PTYAPAPSPA SSYGHQYSQE
101: GYASAASQPN YPPPPSQSQV ADRKKFDRRY SKISDNYSSL LQVSEALGRA GLESSNLIVG IDFTKSNEWT GAKSFNRKSL HHLSNTPNPY EQAITIIGRT
201: LAAFDEDNLI PCYGFGDAST HDQDVFSFYP EGRFCNGFEE VLARYREIVP QLKLAGPTSF APIIEMAMTV VEQSSGQYHV LVIIADGQVT RSVDTEHGRL
301: SPQEQKTVDA IVKASTLPLS IVLVGVGDGP WDMMQEFDDN IPARAFDNFQ FVNFTEIMSK NKDQSRKETE FALSALMEIP PQYKATIELN LLGVRNGNIP
401: QRIPLPPPVQ SGSSFSSSRI PNFEPSVPPY PFESKQMSSA DDIQLCPICL SNPKNMAFGC GHQTCCECGP DLKVCPICRA PIQTRIKLY

Arabidopsis Description

RGLG1E3 ubiquitin-protein ligase RGLG1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SS90]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.