Factsheet for Bra023465.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85597	Canola	cytosol, plastid	100.0	100.0
Bra008758.1-P	Field mustard	nucleus	90.47	87.55
Bra006253.1-P	Field mustard	nucleus, plastid	91.13	87.26
AT5G14420.2	Thale cress	nucleus, plastid	88.69	85.47
Bra000997.1-P	Field mustard	nucleus	76.72	75.55
Bra039105.1-P	Field mustard	nucleus	74.28	73.46
KRG94356	Soybean	nucleus	64.08	67.52
Bra032793.1-P	Field mustard	nucleus	56.76	67.02
VIT_14s0066g00290.t01	Wine grape	mitochondrion	68.07	66.59
TraesCS5B01G111900.1	Wheat	cytosol	35.26	65.98
Zm00001d048784_P001	Maize	cytosol	44.57	65.26
Bra004260.1-P	Field mustard	plastid	63.41	64.85
GSMUA_Achr9P29460_001	Banana	nucleus	64.75	62.39
Os01t0908700-01	Rice	plasma membrane, plastid	61.64	62.33
Solyc02g093520.2.1	Tomato	nucleus	67.85	62.2
EES04073	Sorghum	nucleus	63.19	62.09
KRH58251	Soybean	nucleus	67.18	61.71
TraesCS3B01G449200.1	Wheat	cytosol	63.41	61.24
TraesCS3D01G408900.1	Wheat	cytosol	63.19	61.16
GSMUA_Achr8P01300_001	Banana	nucleus	58.54	60.83
KRG93947	Soybean	nucleus	66.74	60.69
GSMUA_Achr6P06710_001	Banana	nucleus	61.86	60.65
Bra024254.1-P	Field mustard	mitochondrion	49.0	60.38
Zm00001d042437_P005	Maize	cytosol	63.19	60.38
PGSC0003DMT400032842	Potato	mitochondrion	64.08	59.47
Bra031942.1-P	Field mustard	cytosol, mitochondrion, nucleus	44.57	58.77
TraesCS3A01G414400.2	Wheat	cytosol	55.21	57.11
Zm00001d012101_P002	Maize	mitochondrion	62.31	55.31
Bra035112.1-P	Field mustard	plastid	48.56	54.48
Zm00001d041073_P001	Maize	endoplasmic reticulum, golgi, vacuole	63.86	53.23
TraesCS5D01G122000.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	62.53	52.51
Os12t0288400-01	Rice	endoplasmic reticulum, extracellular, vacuole	63.41	52.38
HORVU5Hr1G039100.3	Barley	endoplasmic reticulum, extracellular, golgi	62.31	52.13
TraesCS5A01G103800.2	Wheat	endoplasmic reticulum, extracellular, golgi	61.64	49.73
KRG95016	Soybean	nucleus, peroxisome, plasma membrane	39.91	49.72
HORVU3Hr1G092250.6	Barley	plastid	59.65	48.47
OQU79014	Sorghum	plastid	55.65	47.45
Bra012681.1-P	Field mustard	cytosol	9.76	39.29
Bra018339.1-P	Field mustard	cytosol	11.75	35.81
Bra021976.1-P	Field mustard	plastid	23.73	28.76
Bra014181.1-P	Field mustard	plastid	21.95	26.05
Bra007134.1-P	Field mustard	mitochondrion	16.63	20.66
Bra010041.1-P	Field mustard	cytosol	21.29	16.55
Bra009273.1-P	Field mustard	cytosol	20.84	15.96
Bra005931.1-P	Field mustard	cytosol	20.62	15.84
Bra029301.1-P	Field mustard	cytosol, plastid	20.4	15.83
Bra031645.1-P	Field mustard	cytosol	20.18	15.61

Protein Annotations

MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	EnsemblPlantsGene:Bra023465	EnsemblPlants:Bra023465.1	EnsemblPlants:Bra023465.1-P
InterPro:Copine	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465	UniProt:M4E3W2
PFAM:PF07002	PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR10857	PANTHER:PTHR10857:SF28	SMART:SM00327
SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI0002543568	InterPro:VWF_A	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	InterPro:vWFA_dom_sf	:	:	:	:

Description

AT5G14420 (E=1e-200) RGLG2 | RGLG2 (RING domain Ligase2); ubiquitin-protein ligase

Coordinates

chrA02:-:3476798..3479266

Molecular Weight (calculated)

49664.5 Da

IEP (calculated)

6.507

GRAVY (calculated)

-0.490

Length

451 amino acids

Sequence
(BLAST)

001: MGTGNSKEKW RQRSSSSCRS SSSPWASHQS YPQYPPPPSY APPPEFAQPP SPSYTTQPYS QPPPSQSYGN DKKRLERKYS KISDDYSSLD QVTKALAHAG
101: LESSNLIVGI DFTKSNEWTG ARSFNRKSLH FIGNTPNPYE QAIAIIGRTL AAFDEDNLIP CYGFGDASTH DQDVFSFNPE ERFCNGFEEV LGRYKEIVPQ
201: LKLAGPTSFA PIIDMAMTIV EQSGGQYHVL VIIADGQVTR SVDTENGQLS PQELKTVDAI VQASKLPLSI VLVGVGDGPW DMMREFDDNI PARAFDNFQF
301: VNFTEIMAKK KAQSLKETEF ALSALMEIPQ QYKATLELSL LGRRNGKIAE RFPLPPPMQG GASSYNKPNA NRVPSFKPSV PSYPSESYTV RSSPAPPATT
401: SASDNQICPI CLSNPKDMAF GCGHQTCCEC GPDLQVCPIC RAPIQTRIKL Y

Best Arabidopsis Sequence Match ( AT5G14420.1 )
(BLAST)

001: MGTGNSKENW RQSSFRSTSA SSASPSSSSW ASQQSYPQYG AESYNYPPPP SYAQPPEYTQ PPPPLYSTQP YSAPSYSAPP SQSYGSDNKK RLERKYSKIS
101: DDYSSLEQVT EALARAGLES SNLIVGIDFT KSNEWTGARS FNRKSLHFIG SSPNPYEQAI TIIGRTLAAF DEDNLIPCYG FGDASTHDQD VFSFNSEDRF
201: CNGFEEVLSR YKEIVPQLKL AGPTSFAPII DMAMTIVEQS GGQYHVLVII ADGQVTRSVD TENGQLSPQE QKTVDAIVQA SKLPLSIVLV GVGDGPWDMM
301: REFDDNIPAR AFDNFQFVNF TEIMAKNKAQ SLKETEFALS ALMEIPQQYK ATIELNLLGR RNGYIPERFP LPPPMRGGSS SYNSPKPSRL PSFKPSVPPH
401: PTEGYHVRSS PVPPPTSSAS DNQLCPICLS NPKDMAFGCG HQTCCECGPD LQMCPICRAP IQTRIKLY

Arabidopsis Description

RGLG2E3 ubiquitin-protein ligase RGLG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY87]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.