Factsheet for Bra014181.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 1
nucleus 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021976.1-P	Field mustard	plastid	73.95	75.54
Bra035112.1-P	Field mustard	plastid	29.74	28.11
Bra024254.1-P	Field mustard	mitochondrion	23.68	24.59
Bra032793.1-P	Field mustard	nucleus	23.42	23.3
Bra031942.1-P	Field mustard	cytosol, mitochondrion, nucleus	20.79	23.1
Bra023465.1-P	Field mustard	cytosol, plastid	26.05	21.95
Bra039105.1-P	Field mustard	nucleus	25.79	21.49
Bra004260.1-P	Field mustard	plastid	24.74	21.32
Bra008758.1-P	Field mustard	nucleus	25.79	21.03
Bra006253.1-P	Field mustard	nucleus, plastid	26.05	21.02
Bra000997.1-P	Field mustard	nucleus	25.26	20.96
Bra018339.1-P	Field mustard	cytosol	8.16	20.95
Bra012681.1-P	Field mustard	cytosol	5.53	18.75
Bra007134.1-P	Field mustard	mitochondrion	13.95	14.6
GSMUA_AchrUn_...	Banana	cytosol	6.05	12.37
Bra009273.1-P	Field mustard	cytosol	16.32	10.53
Bra029301.1-P	Field mustard	cytosol, plastid	15.53	10.15
Bra005931.1-P	Field mustard	cytosol	15.53	10.05
Bra010041.1-P	Field mustard	cytosol	15.0	9.83
OQU79015	Sorghum	mitochondrion	2.11	9.64
Bra031645.1-P	Field mustard	cytosol	14.74	9.61
CDY25816	Canola	cytosol	1.05	8.16

Protein Annotations

EnsemblPlants:Bra014181.1	EnsemblPlants:Bra014181.1-P	EnsemblPlantsGene:Bra014181	InterPro:Copine	ncoils:Coil	PANTHER:PTHR10857
PANTHER:PTHR10857:SF47	PFAM:PF07002	SEG:seg	UniParc:UPI0002546539	UniProt:M4DCG7	MapMan:35.1

Description

AT1G79380 (E=1e-015) | copine-related

Coordinates

chrA08:-:2733741..2735894

Molecular Weight (calculated)

42497.8 Da

IEP (calculated)

4.617

GRAVY (calculated)

0.189

Length

380 amino acids

Sequence
(BLAST)

001: MVSTLSKSLY LTYSDACISQ SALATDSAAA TLTLSLRLRR CFSDYSAVRI LLCPRLQISS CSSLSYATSD LFPFSTTRFR WLLYSRIYHL HGVLATSHRL
101: GIVIDTDLGK LRSALREIVN PYENAIFVIG KTLAPSDEHN FISCFGFFDC EFVSQNNFIF NFDSLCSFFI IIQLLPMARK CSVCTVTILP SHGFEDVLPC
201: YRGFTPNFLL SGPISYELLI DAAVDIVEQS NRQFHVLVIG ADGHVNVGDG PWADMRKMGD LIPKRVDLSG IISSPISVPF VSFFDLDLLS AKFLNFTEIM
301: REGPSELAKE REFSLTDLIC DSDEEWIRGG ADEDHPVSQY LRDISMQRVL LDDLLVAEDL ASVETTYDAS HAVRYEDALS

Best Arabidopsis Sequence Match ( AT1G79380.1 )
(BLAST)

001: MTMGNFLKRF GSGKSRSSRN MTLGTTSSQS HEPSPSDPSL SLADNTNATK KKYALIPDRF SSLDQVSKAL REAGLESSNL ILGVDFTKSN EWTGKTSFDG
101: KCLHALGETS NPYEKAIFVI GQTLAPFDED NLIPCFGFGD STTHDEEVFG FHSDNSPCHG FEEVLACYKR IAPNLRLSGP TSYGPLIDAA VDIVEKNNGQ
201: FHVLVIVADG QVTRGTDMAE GELSQQEKTT IDAIVNASSY ALSIVLVGVG DGPWEDMRKF DDKIPKREFD NFQFVNFTEI MTRNSPESAK ETAFALAALM
301: EIPFQYQAAI ELRLLGKQTG LAKTIVPRPP PIPYTPPTNA ELPSTASPAS PEQTQSCPIC LTNRKDVAFS CGHMTCGDCG SKISNCPICR VRITNRLKLY
401: T

Arabidopsis Description

RGLG4E3 ubiquitin-protein ligase RGLG4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAL0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.