Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX68105 | Canola | nucleus | 91.42 | 94.43 |
| CDX88261 | Canola | nucleus | 88.24 | 83.72 |
| CDX87612 | Canola | nucleus | 88.24 | 83.53 |
| CDY31481 | Canola | nucleus | 43.63 | 82.03 |
| AT1G76310.3 | Thale cress | nucleus | 84.07 | 74.73 |
| CDY33634 | Canola | nucleus | 71.81 | 71.81 |
| CDX96631 | Canola | nucleus | 72.06 | 71.71 |
| PGSC0003DMT400075380 | Potato | nucleus | 39.71 | 68.35 |
| CDY29520 | Canola | nucleus | 68.38 | 68.05 |
| Solyc04g082430.2.1 | Tomato | nucleus | 61.52 | 63.87 |
| VIT_18s0001g14170.t01 | Wine grape | nucleus | 66.91 | 61.9 |
| PGSC0003DMT400025854 | Potato | nucleus | 66.18 | 61.22 |
| GSMUA_Achr5P19270_001 | Banana | cytosol | 31.86 | 59.91 |
| KRH60628 | Soybean | nucleus | 57.6 | 58.02 |
| Solyc12g094600.1.1 | Tomato | nucleus | 59.56 | 57.18 |
| KRH51329 | Soybean | nucleus, plastid | 57.84 | 56.87 |
| CDX72551 | Canola | nucleus | 55.39 | 56.36 |
| CDY67210 | Canola | nucleus | 54.9 | 55.17 |
| Os06t0726800-01 | Rice | nucleus | 56.62 | 55.13 |
| GSMUA_Achr11P... | Banana | nucleus | 54.17 | 54.17 |
| GSMUA_Achr8P13320_001 | Banana | nucleus | 55.64 | 54.05 |
| KXG20945 | Sorghum | nucleus | 56.13 | 54.01 |
| Zm00001d036360_P002 | Maize | nucleus | 56.13 | 54.01 |
| CDY29184 | Canola | nucleus | 55.39 | 53.94 |
| CDY26816 | Canola | nucleus | 53.68 | 53.81 |
| CDY07838 | Canola | nucleus | 54.9 | 53.59 |
| GSMUA_Achr5P19110_001 | Banana | nucleus | 55.64 | 53.54 |
| CDY30357 | Canola | nucleus | 53.43 | 53.3 |
| Os04t0563700-01 | Rice | mitochondrion | 54.41 | 52.86 |
| TraesCS7D01G536000.1 | Wheat | nucleus | 53.92 | 52.51 |
| HORVU7Hr1G121820.6 | Barley | nucleus | 53.68 | 52.14 |
| TraesCS7B01G472800.1 | Wheat | nucleus | 53.43 | 52.03 |
| TraesCS7A01G549500.1 | Wheat | nucleus | 53.43 | 52.03 |
| TraesCS2A01G404800.1 | Wheat | nucleus | 50.98 | 51.36 |
| TraesCS2B01G422800.1 | Wheat | nucleus | 50.74 | 50.61 |
| HORVU0Hr1G022770.1 | Barley | nucleus, plastid | 34.07 | 50.0 |
| TraesCS2D01G401700.1 | Wheat | nucleus, plastid | 50.98 | 49.41 |
| EES12664 | Sorghum | nucleus | 52.21 | 49.31 |
| Zm00001d026129_P001 | Maize | nucleus | 50.74 | 48.59 |
| Zm00001d002662_P010 | Maize | nucleus | 51.47 | 46.15 |
| HORVU2Hr1G096070.2 | Barley | nucleus | 50.98 | 44.16 |
| CDY62475 | Canola | nucleus | 33.58 | 39.03 |
| CDY69551 | Canola | nucleus | 33.58 | 38.59 |
| CDY11354 | Canola | plastid | 38.97 | 36.72 |
| CDX80988 | Canola | plastid | 38.24 | 36.45 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, vacuole | 57.84 | 35.33 |
| CDY06752 | Canola | nucleus | 24.02 | 34.39 |
| CDX69311 | Canola | nucleus | 33.33 | 32.46 |
| CDX75659 | Canola | nucleus | 33.58 | 32.01 |
| CDY06757 | Canola | nucleus, plastid | 27.7 | 31.13 |
| CDY66770 | Canola | nucleus | 27.21 | 30.66 |
| CDY47596 | Canola | nucleus | 26.96 | 30.3 |
| CDY17039 | Canola | nucleus | 26.72 | 30.03 |
| CDX88368 | Canola | plastid | 27.94 | 30.0 |
| CDY48212 | Canola | nucleus | 27.7 | 29.97 |
| CDY61993 | Canola | nucleus | 27.7 | 29.97 |
| CDY23653 | Canola | nucleus | 26.23 | 29.97 |
| CDX87520 | Canola | nucleus | 28.19 | 29.79 |
| CDY22369 | Canola | nucleus | 25.49 | 29.63 |
| CDX85466 | Canola | plastid | 30.39 | 29.38 |
| CDY62408 | Canola | nucleus, plasma membrane, plastid | 14.95 | 28.91 |
| CDY17091 | Canola | nucleus | 25.25 | 28.77 |
| CDY17037 | Canola | nucleus, plastid | 25.49 | 28.57 |
| CDY41784 | Canola | plastid | 23.77 | 28.53 |
| CDY02719 | Canola | plastid | 29.9 | 28.44 |
| CDX97090 | Canola | nucleus | 30.15 | 28.21 |
| CDY47595 | Canola | nucleus, plastid | 25.49 | 28.03 |
| CDY53304 | Canola | plastid | 27.94 | 27.87 |
| CDX87087 | Canola | plastid | 27.94 | 27.34 |
| CDX81722 | Canola | nucleus, plastid | 26.96 | 27.3 |
| CDY65994 | Canola | plastid | 29.41 | 27.09 |
| CDX69768 | Canola | nucleus, plastid | 28.92 | 27.0 |
| CDX92090 | Canola | mitochondrion, nucleus | 23.53 | 26.89 |
| CDX67944 | Canola | plastid | 28.43 | 26.85 |
| CDX96836 | Canola | nucleus, plastid | 28.92 | 26.82 |
| CDX79389 | Canola | plastid | 28.43 | 26.79 |
| CDY25649 | Canola | plastid | 28.68 | 26.77 |
| CDY38664 | Canola | nucleus, plastid | 29.66 | 26.59 |
| CDY66415 | Canola | nucleus | 28.19 | 26.5 |
| CDY36574 | Canola | mitochondrion, nucleus | 28.19 | 26.38 |
| CDY39984 | Canola | plastid | 28.92 | 26.34 |
| CDY37592 | Canola | mitochondrion, plastid | 29.41 | 26.26 |
| CDX87305 | Canola | plastid | 28.68 | 25.32 |
| CDY14091 | Canola | plastid | 37.75 | 23.48 |
| CDY33338 | Canola | nucleus | 33.58 | 23.46 |
| CDY35083 | Canola | cytosol, endoplasmic reticulum, nucleus | 33.82 | 22.66 |
| CDX96819 | Canola | nucleus | 34.31 | 21.71 |
| CDY04980 | Canola | nucleus | 37.99 | 21.59 |
| CDX83953 | Canola | nucleus | 34.07 | 21.22 |
| CDY19803 | Canola | golgi, nucleus, plasma membrane, plastid | 27.94 | 11.53 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.2 | GO:A0A078DA21 | EnsemblPlants:CDX85942 | ProteinID:CDX85942 | ProteinID:CDX85942.1 |
| InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00143782001 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 |
| ScanProsite:PS00292 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF350 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 |
| UniParc:UPI0004EE34C4 | SEG:seg | : | : | : | : |
Description
BnaC06g21920D
Coordinates
chrLK031843:-:973964..976303
Molecular Weight (calculated)
46921.6 Da
IEP (calculated)
5.243
GRAVY (calculated)
-0.317
Length
408 amino acids
Sequence
(BLAST)
(BLAST)
001: MVGSDENKHG VVGPVNGQTR RALSNINKNI IRAPLYPCAV NKRPLSQKNG ICHKKIPPVP VHRPITRSFA AQLAENKPQI HKQQETKQSD SIDRIIIDAE
101: EDGDFNEPMF VQHTESILDE IDRMEGIEME DEEEETVMDI DSSDKNNPLA VVEYIPDIYD FYKNNECLSC VPTNYMENQP DINERMRGIL VDWLIEVHYK
201: FELMEETLYL TINLIDRFLA VTQHVPRKKL QLVGVTAMLL ACKYEEVSVP VVDDLIVISD KAYTRREVLD MEKLMANSLQ FNFCLPTPYV FMRRFLKAAQ
301: SDKKVELLSF FIIELCLVEY EMLHYVPSQL AASAIYTAQS TLKGFEEWNK TCEFYTGYTE EKLMECSRKM VGLHHKAGIG KLTGVYRKYN TSKFGYASRT
401: EPAGFLLL
101: EDGDFNEPMF VQHTESILDE IDRMEGIEME DEEEETVMDI DSSDKNNPLA VVEYIPDIYD FYKNNECLSC VPTNYMENQP DINERMRGIL VDWLIEVHYK
201: FELMEETLYL TINLIDRFLA VTQHVPRKKL QLVGVTAMLL ACKYEEVSVP VVDDLIVISD KAYTRREVLD MEKLMANSLQ FNFCLPTPYV FMRRFLKAAQ
301: SDKKVELLSF FIIELCLVEY EMLHYVPSQL AASAIYTAQS TLKGFEEWNK TCEFYTGYTE EKLMECSRKM VGLHHKAGIG KLTGVYRKYN TSKFGYASRT
401: EPAGFLLL
001: MGGSDENRHG VIGPMNRQQG GLRGGKVIPT NGQTRRALSN INKNIIGAPV YPCAVKRPFT EKNGICNKKI PPVPVHRPVT RKFAAQLAEN NLQIHKEETK
101: KPDLISNEAL DRIITDVEEG DFNEPMFVQH TEAMLEEIDK MEGIEMQDSN DIDAEVEESV MDIDSCDKNN PLSVVEYIND IYCFYKKNEC RSCVPPNYME
201: NQHDINERMR GILFDWLIEV HYKFELMEET LYLTINLIDR FLAVHQHIAR KKLQLVGVTA MLLACKYEEV SVPVVDDLIL ISDKAYTRTE ILDMEKLMAN
301: TLQFNFCLPT PYVFMRRFLK AAQSDKKLEL LSFFMIELCL VEYEMLQYTP SQLAASAIYT AQSTLKGYED WSKTSEFHSG YTEEALLECS RKMVGLHHKA
401: GTGKLTGVHR KYNTSKFGYA ARIEPAGFLL L
101: KPDLISNEAL DRIITDVEEG DFNEPMFVQH TEAMLEEIDK MEGIEMQDSN DIDAEVEESV MDIDSCDKNN PLSVVEYIND IYCFYKKNEC RSCVPPNYME
201: NQHDINERMR GILFDWLIEV HYKFELMEET LYLTINLIDR FLAVHQHIAR KKLQLVGVTA MLLACKYEEV SVPVVDDLIL ISDKAYTRTE ILDMEKLMAN
301: TLQFNFCLPT PYVFMRRFLK AAQSDKKLEL LSFFMIELCL VEYEMLQYTP SQLAASAIYT AQSTLKGYED WSKTSEFHSG YTEEALLECS RKMVGLHHKA
401: GTGKLTGVHR KYNTSKFGYA ARIEPAGFLL L
Arabidopsis Description
CYCB2;4CYCLIN B2;4 [Source:TAIR;Acc:AT1G76310]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.