CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68497
CDX69408
CDX70711
CDX70729
CDX76164
CDX77460
CDX78706
CDX78721
CDX83047
CDX85167
CDX87018
CDX89437
CDX90458
CDX92996
CDX94841
CDY03368
CDY04139
CDY05870
CDY06213
CDY07260
CDY09609
CDY13189
CDY16966
CDY17426
CDY18083
CDY25328
CDY25566
CDY34403
CDY36901
CDY44976
CDY46075	nucleus
CDY47165
CDY58069
CDY58070
CDY63966	nucleus
CDY64587
CDY66197
CDY67496
CDY70805

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15570.1	CDY07260	AT1G61870.1	20706207
AT1G15570.1	CDY25328	AT1G61870.1	20706207
AT1G15570.1	CDY47165	AT1G61870.1	20706207
AT1G15570.1	CDY25566	AT1G64180.1	21798944
AT1G15570.1	CDY34403	AT1G64180.1	21798944
AT1G15570.1	CDY46075	AT2G23430.1	20018602
AT1G15570.1	CDY63966	AT2G23430.1	20018602
AT1G15570.1	CDX70711	AT3G11270.1	20706207
AT1G15570.1	CDX78706	AT3G11270.1	20706207
AT1G15570.1	CDY04139	AT3G11270.1	20706207
AT1G15570.1	CDY06213	AT3G11270.1	20706207
AT1G15570.1	CDY17426	AT3G11270.1	20706207
AT1G15570.1	CDX77460	AT3G24140.1	21798944
AT1G15570.1	CDX85167	AT3G24140.1	21798944
AT1G15570.1	CDX92996	AT3G24140.1	21798944
AT1G15570.1	CDX94841	AT3G24140.1	21798944
AT1G15570.1	CDY18083	AT3G24140.1	21798944
AT1G15570.1	CDY64587	AT3G24140.1	21798944
AT1G15570.1	CDY36901	AT3G48150.1	21798944
AT1G15570.1	CDY44976	AT3G48150.1	21798944
AT1G15570.1	CDY58069	AT3G48150.1	21798944
AT1G15570.1	CDY58070	AT3G48150.1	21798944
AT1G15570.1	CDY70805	AT3G48150.1	21798944
AT1G15570.1	CDX68497	AT3G48750.1	16415207
AT1G15570.1	CDX83047	AT3G48750.1	16415207
AT1G15570.1	CDX87018	AT3G48750.1	16415207
AT1G15570.1	CDY05870	AT3G48750.1	16415207
AT1G15570.1	CDY66197	AT3G48750.1	16415207
AT1G15570.1	CDY67496	AT3G48750.1	16415207
AT1G15570.1	CDX76164	AT3G54180.1	20706207
AT1G15570.1	CDY13189	AT3G54180.1	20706207
AT1G15570.1	CDX90458	AT4G17680.1	21798944
AT1G15570.1	CDY09609	AT4G17680.1	21798944
AT1G15570.1	CDX89437	AT4G25200.1	21798944
AT1G15570.1	CDY03368	AT4G25200.1	21798944
AT1G15570.1	CDX69408	AT5G16970.1	20706207
AT1G15570.1	CDX70729	AT5G16970.1	20706207
AT1G15570.1	CDX78721	AT5G16970.1	20706207
AT1G15570.1	CDY16966	AT5G16970.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016654.1-P	Field mustard	nucleus, plastid	98.64	97.53
CDY66415	Canola	nucleus	84.55	85.71
CDY53304	Canola	plastid	77.05	82.89
CDY36574	Canola	mitochondrion, nucleus	82.05	82.8
CDX81722	Canola	nucleus, plastid	75.68	82.63
AT1G15570.1	Thale cress	nucleus, plastid	79.77	78.0
CDY48212	Canola	nucleus	60.23	70.29
CDY61993	Canola	nucleus	60.0	70.03
CDX79389	Canola	plastid	67.27	68.36
CDX67944	Canola	plastid	67.05	68.29
CDY38664	Canola	nucleus, plastid	68.64	66.37
CDY37592	Canola	mitochondrion, plastid	68.64	66.08
CDY39984	Canola	plastid	65.91	64.73
CDX87305	Canola	plastid	67.27	64.07
GSMUA_Achr1P14000_001	Banana	nucleus, plasma membrane, plastid	35.0	62.35
KRH47513	Soybean	nucleus	55.45	51.26
VIT_09s0002g05240.t01	Wine grape	nucleus	56.82	51.02
CDY06752	Canola	nucleus	32.05	49.47
KRH44391	Soybean	nucleus	52.5	49.04
CDX87087	Canola	plastid	45.45	47.96
CDX97090	Canola	nucleus	47.05	47.48
Solyc03g120440.1.1	Tomato	nucleus, plastid	49.32	47.38
PGSC0003DMT400006576	Potato	nucleus	49.55	47.08
CDX69768	Canola	nucleus, plastid	45.68	46.0
CDY22369	Canola	nucleus	36.59	45.87
CDY17091	Canola	nucleus	35.91	44.13
CDY17037	Canola	nucleus, plastid	36.14	43.68
CDY47595	Canola	nucleus, plastid	36.36	43.13
CDY23653	Canola	nucleus	34.77	42.86
OQU77084	Sorghum	nucleus	47.5	42.83
Os12t0502300-01	Rice	nucleus, plastid	47.5	42.65
CDY66770	Canola	nucleus	35.0	42.54
CDY47596	Canola	nucleus	34.77	42.15
CDY17039	Canola	nucleus	34.55	41.87
CDY06757	Canola	nucleus, plastid	34.32	41.6
CDX88368	Canola	plastid	35.68	41.32
CDY62408	Canola	nucleus, plasma membrane, plastid	19.77	41.23
TraesCSU01G054300.1	Wheat	nucleus	46.82	41.12
TraesCS3A01G523600.1	Wheat	plastid	47.05	40.83
TraesCS3D01G529100.1	Wheat	plastid	46.82	40.79
KXG23504	Sorghum	mitochondrion, nucleus	44.77	40.79
GSMUA_Achr3P25340_001	Banana	nucleus	50.0	40.59
TraesCS5D01G121100.2	Wheat	plastid	46.59	40.35
HORVU3Hr1G114440.21	Barley	nucleus, plastid	46.36	40.24
TraesCS5A01G108500.2	Wheat	plastid	46.36	40.16
CDX87520	Canola	nucleus	35.23	40.16
TraesCS5B01G114300.2	Wheat	plastid	46.14	40.04
Zm00001d023732_P002	Maize	mitochondrion, nucleus, plastid	43.86	39.79
Zm00001d014756_P006	Maize	nucleus, plastid	46.82	39.54
CDY41784	Canola	plastid	30.45	39.41
CDX85466	Canola	plastid	37.27	38.86
CDY02719	Canola	plastid	37.05	38.0
CDX92090	Canola	mitochondrion, nucleus	30.45	37.53
CDY31481	Canola	nucleus	18.41	37.33
CDY65994	Canola	plastid	37.27	37.02
CDY25649	Canola	plastid	36.59	36.84
CDX72551	Canola	nucleus	27.95	30.67
CDY67210	Canola	nucleus	27.73	30.05
CDY62475	Canola	nucleus	23.64	29.63
CDY33634	Canola	nucleus	27.27	29.41
CDY69551	Canola	nucleus	23.64	29.3
CDY29184	Canola	nucleus	27.73	29.12
CDY07838	Canola	nucleus	27.5	28.95
CDX85942	Canola	nucleus	26.82	28.92
CDY30357	Canola	nucleus	26.82	28.85
CDY29520	Canola	nucleus	26.82	28.78
CDX96631	Canola	nucleus	26.82	28.78
CDY26816	Canola	nucleus	26.36	28.5
CDX88261	Canola	nucleus	27.27	27.91
CDX87612	Canola	nucleus	27.27	27.84
CDX68105	Canola	nucleus	24.09	26.84
CDY11354	Canola	plastid	25.23	25.64
CDX69311	Canola	nucleus	24.32	25.54
CDX80988	Canola	plastid	24.77	25.47
CDX75659	Canola	nucleus	24.09	24.77
CDY19803	Canola	golgi, nucleus, plasma membrane, plastid	45.0	20.02
CDY33338	Canola	nucleus	25.0	18.84
CDY35083	Canola	cytosol, endoplasmic reticulum, nucleus	24.55	17.73
CDX96819	Canola	nucleus	25.45	17.36
CDX83953	Canola	nucleus	25.0	16.79
CDY14091	Canola	plastid	24.77	16.62
CDY04980	Canola	nucleus	25.0	15.32

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.1	GO:A0A078E6I2	EnsemblPlants:CDX96836	ProteinID:CDX96836	ProteinID:CDX96836.1
InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	EnsemblPlantsGene:GSBRNA2T00103072001	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771
PANTHER:PTHR10177	PANTHER:PTHR10177:SF346	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI0004EEB329

Description

BnaA08g23790D

Coordinates

chrLK031895:-:1149536..1151517

Molecular Weight (calculated)

49668.4 Da

IEP (calculated)

8.437

GRAVY (calculated)

-0.290

Length

440 amino acids

Sequence
(BLAST)

001: MRNENYVSRP FTRALASALR ASTTQNQQRA NTKRPASEDK NVTAPNKKNK GAVLADISNA SFNAPKLEAK NIKQVKKGRG TSQLASSCVT SENTKLQSKT
101: DEKAEAVSVT AGSMSFCKDT HDTADNCNFR LPPRPLGRSA SIVEKSDVIG SSTALDIPKF IDIDSDDKDP LLCCLYAPQI YYSLRVSELK RRPVPNFMER
201: IQKDVTESMR GILVDWLVEV AEEYTLVPDT LYLTVYLIDW FLNGNYVERN RLQLLGVTCM LIASKYEEIY APRIEEFCSI TDNTYTRDQV LEMENQVLAH
301: FSFQIYTPTP KTFLRRFLRA AHASCQSLSL GVELEFLASY LMELTLVDYH FLKFLPSVIA ASAVFLAKWT LDQSNHPWNP TLEHYTTYKA SDLKASVHAL
401: QDLQLNTKGC PLSAVRMKYK QEKFKSVAVI TSPKLLDTLF

Best Arabidopsis Sequence Match ( AT1G15570.1 )
(BLAST)

001: MGKENAVSRP FTRSLASALR ASEVTSTTQN QQRVNTKRPA LEDTRATGPN KRKKRAVLGE ITNVNSNTAI LEAKNSKQIK KGRGHGLAST SQLATSVTSE
101: VTDLQSRTDA KVEVASNTAG NLSVSKGTDN TADNCIEIWN SRLPPRPLGR SASTAEKSAV IGSSTVPDIP KFVDIDSDDK DPLLCCLYAP EIHYNLRVSE
201: LKRRPLPDFM ERIQKDVTQS MRGILVDWLV EVSEEYTLAS DTLYLTVYLI DWFLHGNYVQ RQQLQLLGIT CMLIASKYEE ISAPRIEEFC FITDNTYTRD
301: QVLEMENQVL KHFSFQIYTP TPKTFLRRFL RAAQASRLSP SLEVEFLASY LTELTLIDYH FLKFLPSVVA ASAVFLAKWT MDQSNHPWNP TLEHYTTYKA
401: SDLKASVHAL QDLQLNTKGC PLSAIRMKYR QEKYKSVAVL TSPKLLDTLF

Arabidopsis Description

CYCA2-3CYCA2 [Source:UniProtKB/TrEMBL;Acc:A0A178WNJ4]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.