Subcellular Localization
min:
: max
Winner_takes_all: nucleus, plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 3
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY36574 | Canola | mitochondrion, nucleus | 81.56 | 84.17 |
| CDY66415 | Canola | nucleus | 80.67 | 83.64 |
| CDY53304 | Canola | plastid | 72.89 | 80.2 |
| CDX81722 | Canola | nucleus, plastid | 71.78 | 80.15 |
| CDX96836 | Canola | nucleus, plastid | 78.0 | 79.77 |
| Bra026756.1-P | Field mustard | plastid | 72.22 | 79.46 |
| Bra026120.1-P | Field mustard | nucleus | 82.0 | 79.18 |
| Bra016654.1-P | Field mustard | nucleus, plastid | 77.78 | 78.65 |
| AT1G80370.1 | Thale cress | plastid | 71.33 | 69.63 |
| GSMUA_Achr1P14000_001 | Banana | nucleus, plasma membrane, plastid | 33.78 | 61.54 |
| VIT_09s0002g05240.t01 | Wine grape | nucleus | 58.22 | 53.47 |
| KRH47513 | Soybean | nucleus | 55.78 | 52.73 |
| KRH44391 | Soybean | nucleus | 52.89 | 50.53 |
| AT5G43080.1 | Thale cress | nucleus | 37.78 | 47.89 |
| Solyc03g120440.1.1 | Tomato | nucleus, plastid | 48.22 | 47.38 |
| PGSC0003DMT400006576 | Potato | nucleus | 48.44 | 47.08 |
| AT5G25380.4 | Thale cress | plastid | 46.0 | 46.73 |
| AT5G11300.1 | Thale cress | plastid | 43.33 | 44.72 |
| Os12t0502300-01 | Rice | nucleus, plastid | 48.44 | 44.49 |
| OQU77084 | Sorghum | nucleus | 46.67 | 43.03 |
| AT1G47210.2 | Thale cress | nucleus | 35.56 | 43.01 |
| KXG23504 | Sorghum | mitochondrion, nucleus | 46.0 | 42.86 |
| AT1G47230.2 | Thale cress | nucleus, plastid | 35.11 | 42.7 |
| Zm00001d023732_P002 | Maize | mitochondrion, nucleus, plastid | 45.56 | 42.27 |
| AT1G47220.1 | Thale cress | nucleus | 30.67 | 42.2 |
| TraesCSU01G054300.1 | Wheat | nucleus | 46.0 | 41.32 |
| TraesCS3D01G529100.1 | Wheat | plastid | 46.0 | 40.99 |
| TraesCS5D01G121100.2 | Wheat | plastid | 46.22 | 40.94 |
| HORVU3Hr1G114440.21 | Barley | nucleus, plastid | 46.0 | 40.83 |
| TraesCS5B01G114300.2 | Wheat | plastid | 46.0 | 40.83 |
| TraesCS3A01G523600.1 | Wheat | plastid | 46.0 | 40.83 |
| GSMUA_Achr3P25340_001 | Banana | nucleus | 48.89 | 40.59 |
| Zm00001d014756_P006 | Maize | nucleus, plastid | 46.89 | 40.5 |
| TraesCS5A01G108500.2 | Wheat | plastid | 45.56 | 40.35 |
| AT1G77390.1 | Thale cress | plastid | 37.78 | 38.46 |
| AT1G44110.1 | Thale cress | plastid | 38.44 | 37.61 |
| AT2G26760.1 | Thale cress | nucleus | 25.11 | 29.2 |
| AT2G17620.1 | Thale cress | nucleus | 27.11 | 28.44 |
| AT3G11520.1 | Thale cress | nucleus | 25.33 | 27.54 |
| AT4G35620.1 | Thale cress | nucleus | 26.22 | 27.51 |
| AT1G20610.1 | Thale cress | nucleus | 25.11 | 26.34 |
| AT1G20590.1 | Thale cress | cytosol, golgi, nucleus, plastid | 15.11 | 25.66 |
| AT1G76310.3 | Thale cress | nucleus | 26.0 | 25.49 |
| AT4G37490.1 | Thale cress | nucleus | 24.22 | 25.47 |
| AT5G06150.1 | Thale cress | nucleus | 24.67 | 24.94 |
| AT1G16330.1 | Thale cress | nucleus | 24.44 | 16.98 |
| AT1G34460.5 | Thale cress | cytosol | 16.89 | 15.26 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.1 | EntrezGene:838127 | UniProt:A0A178WNJ4 | ProteinID:AAF71982.1 | ProteinID:AEE29336.1 |
| ArrayExpress:AT1G15570 | EnsemblPlantsGene:AT1G15570 | RefSeq:AT1G15570 | TAIR:AT1G15570 | RefSeq:AT1G15570-TAIR-G | EnsemblPlants:AT1G15570.1 |
| TAIR:AT1G15570.1 | EMBL:AY072105 | EMBL:AY096733 | Unigene:At.1679 | Symbol:CYCA2;3 | InterPro:Cyclin-like |
| InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006259 |
| GO:GO:0007049 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008283 | GO:GO:0009058 |
| GO:GO:0009653 | GO:GO:0009791 | GO:GO:0009987 | GO:GO:0010311 | GO:GO:0010389 | GO:GO:0010444 |
| GO:GO:0030154 | GO:GO:0042023 | GO:GO:0051301 | GO:GO:2000123 | RefSeq:NP_173010.1 | ProteinID:OAP19794.1 |
| PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000282 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0002000 | PO:PO:0004507 | PO:PO:0006308 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009013 | PO:PO:0009015 | PO:PO:0009025 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020121 | PO:PO:0020137 | PO:PO:0020147 | PO:PO:0020148 | PO:PO:0025022 | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF346 | UniProt:Q38819 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | EMBL:U17890 |
| UniParc:UPI000004B2D2 | : | : | : | : | : |
Description
CYCA2-3CYCA2 [Source:UniProtKB/TrEMBL;Acc:A0A178WNJ4]
Coordinates
chr1:+:5361865..5365559
Molecular Weight (calculated)
50644.5 Da
IEP (calculated)
8.872
GRAVY (calculated)
-0.338
Length
450 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKENAVSRP FTRSLASALR ASEVTSTTQN QQRVNTKRPA LEDTRATGPN KRKKRAVLGE ITNVNSNTAI LEAKNSKQIK KGRGHGLAST SQLATSVTSE
101: VTDLQSRTDA KVEVASNTAG NLSVSKGTDN TADNCIEIWN SRLPPRPLGR SASTAEKSAV IGSSTVPDIP KFVDIDSDDK DPLLCCLYAP EIHYNLRVSE
201: LKRRPLPDFM ERIQKDVTQS MRGILVDWLV EVSEEYTLAS DTLYLTVYLI DWFLHGNYVQ RQQLQLLGIT CMLIASKYEE ISAPRIEEFC FITDNTYTRD
301: QVLEMENQVL KHFSFQIYTP TPKTFLRRFL RAAQASRLSP SLEVEFLASY LTELTLIDYH FLKFLPSVVA ASAVFLAKWT MDQSNHPWNP TLEHYTTYKA
401: SDLKASVHAL QDLQLNTKGC PLSAIRMKYR QEKYKSVAVL TSPKLLDTLF
101: VTDLQSRTDA KVEVASNTAG NLSVSKGTDN TADNCIEIWN SRLPPRPLGR SASTAEKSAV IGSSTVPDIP KFVDIDSDDK DPLLCCLYAP EIHYNLRVSE
201: LKRRPLPDFM ERIQKDVTQS MRGILVDWLV EVSEEYTLAS DTLYLTVYLI DWFLHGNYVQ RQQLQLLGIT CMLIASKYEE ISAPRIEEFC FITDNTYTRD
301: QVLEMENQVL KHFSFQIYTP TPKTFLRRFL RAAQASRLSP SLEVEFLASY LTELTLIDYH FLKFLPSVVA ASAVFLAKWT MDQSNHPWNP TLEHYTTYKA
401: SDLKASVHAL QDLQLNTKGC PLSAIRMKYR QEKYKSVAVL TSPKLLDTLF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.