Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032202.1-P | Field mustard | plastid | 73.91 | 80.57 |
| CDY25649 | Canola | plastid | 75.43 | 79.41 |
| CDY65994 | Canola | plastid | 76.09 | 79.01 |
| Bra023606.1-P | Field mustard | plastid | 70.22 | 77.09 |
| CDX85466 | Canola | plastid | 70.43 | 76.78 |
| CDY02719 | Canola | plastid | 70.87 | 75.99 |
| Os05t0237100-01 | Rice | extracellular | 28.7 | 67.01 |
| KRH53279 | Soybean | plastid | 63.7 | 61.04 |
| KRH64625 | Soybean | plastid | 64.13 | 60.95 |
| VIT_18s0001g02060.t01 | Wine grape | plastid | 63.48 | 58.99 |
| KRH17986 | Soybean | plastid | 61.74 | 56.46 |
| TraesCS1B01G151800.3 | Wheat | nucleus | 43.26 | 56.06 |
| Solyc11g005090.1.1 | Tomato | plastid | 59.13 | 55.51 |
| PGSC0003DMT400015424 | Potato | plastid | 56.96 | 55.51 |
| KRH16410 | Soybean | plastid | 60.65 | 55.36 |
| Zm00001d032128_P001 | Maize | cytosol | 18.91 | 55.06 |
| Os12t0298950-00 | Rice | nucleus | 52.61 | 54.14 |
| Os01t0233500-01 | Rice | nucleus, plastid | 57.61 | 52.17 |
| Os01t0233100-00 | Rice | nucleus, plastid | 55.65 | 52.14 |
| GSMUA_Achr5P06960_001 | Banana | nucleus, plastid | 56.09 | 51.6 |
| AT1G77390.1 | Thale cress | plastid | 49.57 | 51.58 |
| TraesCS3B01G183400.1 | Wheat | plastid | 57.17 | 51.57 |
| TraesCS3D01G164600.1 | Wheat | plastid | 56.96 | 51.37 |
| TraesCS3A01G157000.1 | Wheat | plastid | 56.74 | 50.88 |
| GSMUA_Achr2P19220_001 | Banana | nucleus, plastid | 55.43 | 50.8 |
| Zm00001d040381_P001 | Maize | plastid | 57.61 | 49.72 |
| TraesCS1D01G134100.2 | Wheat | nucleus, plastid | 49.13 | 47.38 |
| KXG21616 | Sorghum | nucleus, plastid | 47.39 | 45.51 |
| Zm00001d009011_P001 | Maize | nucleus, plastid | 50.43 | 45.49 |
| AT1G47230.2 | Thale cress | nucleus, plastid | 35.65 | 44.32 |
| AT5G43080.1 | Thale cress | nucleus | 33.04 | 42.82 |
| AT1G47220.1 | Thale cress | nucleus | 30.22 | 42.51 |
| AT1G47210.2 | Thale cress | nucleus | 34.13 | 42.2 |
| Zm00001d021353_P002 | Maize | mitochondrion, nucleus | 18.26 | 42.0 |
| TraesCS1A01G138300.1 | Wheat | nucleus, plastid | 46.52 | 40.76 |
| AT5G25380.4 | Thale cress | plastid | 37.39 | 38.83 |
| AT1G15570.1 | Thale cress | nucleus, plastid | 37.61 | 38.44 |
| AT5G11300.1 | Thale cress | plastid | 36.09 | 38.07 |
| AT1G80370.1 | Thale cress | plastid | 37.39 | 37.31 |
| Zm00001d010404_P001 | Maize | nucleus | 37.83 | 35.88 |
| AT2G26760.1 | Thale cress | nucleus | 26.96 | 32.04 |
| AT4G37490.1 | Thale cress | nucleus | 28.26 | 30.37 |
| AT3G11520.1 | Thale cress | nucleus | 26.3 | 29.23 |
| AT2G17620.1 | Thale cress | nucleus | 27.17 | 29.14 |
| AT1G20590.1 | Thale cress | cytosol, golgi, nucleus, plastid | 16.09 | 27.92 |
| AT4G35620.1 | Thale cress | nucleus | 25.87 | 27.74 |
| AT1G20610.1 | Thale cress | nucleus | 25.87 | 27.74 |
| AT1G76310.3 | Thale cress | nucleus | 26.96 | 27.02 |
| AT5G06150.1 | Thale cress | nucleus | 25.65 | 26.52 |
| AT1G34460.5 | Thale cress | cytosol | 18.91 | 17.47 |
| AT1G16330.1 | Thale cress | nucleus | 23.7 | 16.82 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.1 | EntrezGene:841014 | UniProt:A0A178W0H5 | ProteinID:AAG50557.1 | ProteinID:AEE32021.1 |
| EMBL:AK175406 | ArrayExpress:AT1G44110 | EnsemblPlantsGene:AT1G44110 | RefSeq:AT1G44110 | TAIR:AT1G44110 | RefSeq:AT1G44110-TAIR-G |
| EnsemblPlants:AT1G44110.1 | TAIR:AT1G44110.1 | Symbol:CYCA1;1 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom |
| InterPro:Cyclin_N | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0051301 | RefSeq:NP_175077.1 | ProteinID:OAP12027.1 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | ScanProsite:PS00292 | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF239 | UniProt:Q9C6Y3 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI000009D87A |
| SEG:seg | : | : | : | : | : |
Description
CYCA1-1CYCA1 [Source:UniProtKB/TrEMBL;Acc:A0A178W0H5]
Coordinates
chr1:-:16774765..16777352
Molecular Weight (calculated)
51907.0 Da
IEP (calculated)
8.227
GRAVY (calculated)
-0.375
Length
460 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNILQNRRS SFSSSTKSSL AKRQAPSSSE NSVKLMPAMT KKRAPLSNIT NQKIASRLQN SDSVHCSNKS AKLKIAPSVC VNASFSSNLQ QSIVPHKVAS
101: SPSKSDDGSV SMDETRSSSD SYKSPQVEYI ENDDVSAVVS IERKALSNLF ITPNSETIDN YCSRDVLSDM KKMDKNQIVN IDSNNGDPQL CATFACDIYK
201: HLRASEAKKR PDVDYMERVQ KDVNSSMRGI LVDWLIEVSE EYRLVPETLY LTVNYIDRYL SGNVISRQKL QLLGVACMMI AAKYEEICAP QVEEFCYITD
301: NTYLKDEVLD MESDVLNYLK FEMTAPTTKC FLRRFVRAAH GVHEAPLMQL ECMANYIAEL SLLEYTMLSH SPSLVAASAI FLAKYILDPT RRPWNSTLQH
401: YTQYKAMELR GCVKDLQRLC STAHGSTLPA VREKYSQHKY KFVAKKFCPS VIPQEFFNNS
101: SPSKSDDGSV SMDETRSSSD SYKSPQVEYI ENDDVSAVVS IERKALSNLF ITPNSETIDN YCSRDVLSDM KKMDKNQIVN IDSNNGDPQL CATFACDIYK
201: HLRASEAKKR PDVDYMERVQ KDVNSSMRGI LVDWLIEVSE EYRLVPETLY LTVNYIDRYL SGNVISRQKL QLLGVACMMI AAKYEEICAP QVEEFCYITD
301: NTYLKDEVLD MESDVLNYLK FEMTAPTTKC FLRRFVRAAH GVHEAPLMQL ECMANYIAEL SLLEYTMLSH SPSLVAASAI FLAKYILDPT RRPWNSTLQH
401: YTQYKAMELR GCVKDLQRLC STAHGSTLPA VREKYSQHKY KFVAKKFCPS VIPQEFFNNS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.