CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG94254
KRG94519
KRH06950
KRH20017
KRH41052
KRH54085
KRH57679
KRH63871

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G44110.1	KRH20017	AT5G07300.1	20706207
AT1G44110.1	KRH41052	AT5G07300.1	20706207
AT1G44110.1	KRH54085	AT5G07300.1	20706207
AT1G44110.1	KRH63871	AT5G07300.1	20706207
AT1G44110.1	KRG94254	AT5G14170.1	20706207
AT1G44110.1	KRG94519	AT5G14170.1	20706207
AT1G44110.1	KRH06950	AT5G14170.1	20706207
AT1G44110.1	KRH57679	AT5G14170.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53279	Soybean	plastid	94.42	95.21
Os05t0237100-01	Rice	extracellular	27.89	68.53
VIT_18s0001g02060.t01	Wine grape	plastid	69.83	68.28
KRH17986	Soybean	plastid	70.25	67.59
KRH16410	Soybean	plastid	68.18	65.48
Solyc11g005090.1.1	Tomato	plastid	65.91	65.1
PGSC0003DMT400015424	Potato	plastid	63.43	65.04
AT1G44110.1	Thale cress	plastid	60.95	64.13
Bra032202.1-P	Field mustard	plastid	54.96	63.03
Bra023606.1-P	Field mustard	plastid	53.93	62.29
CDY25649	Canola	plastid	55.79	61.78
CDY65994	Canola	plastid	56.41	61.63
CDX85466	Canola	plastid	53.72	61.61
CDY02719	Canola	plastid	54.34	61.31
Zm00001d032128_P001	Maize	cytosol	19.42	59.49
Os12t0298950-00	Rice	nucleus	54.13	58.61
TraesCS1B01G151800.3	Wheat	nucleus	42.15	57.46
TraesCS3D01G164600.1	Wheat	plastid	60.33	57.25
TraesCS3B01G183400.1	Wheat	plastid	60.12	57.06
TraesCS3A01G157000.1	Wheat	plastid	60.33	56.92
Os01t0233500-01	Rice	nucleus, plastid	58.68	55.91
Os01t0233100-00	Rice	nucleus, plastid	56.61	55.8
GSMUA_Achr2P19220_001	Banana	nucleus, plastid	57.64	55.58
CDX88368	Canola	plastid	43.39	55.26
CDX87520	Canola	nucleus	44.01	55.18
GSMUA_Achr5P06960_001	Banana	nucleus, plastid	56.61	54.8
Bra015671.1-P	Field mustard	plastid	43.59	54.66
Zm00001d040381_P001	Maize	plastid	60.12	54.6
KRH52056	Soybean	nucleus	23.76	54.5
CDY62408	Canola	nucleus, plasma membrane, plastid	23.55	54.03
CDY41784	Canola	plastid	37.6	53.53
AT1G77390.1	Thale cress	plastid	46.49	50.91
Zm00001d009011_P001	Maize	nucleus, plastid	52.69	50.0
KXG21616	Sorghum	nucleus, plastid	49.38	49.9
CDX92090	Canola	mitochondrion, nucleus	36.36	49.3
TraesCS1D01G134100.2	Wheat	nucleus, plastid	48.14	48.85
Bra022173.1-P	Field mustard	nucleus, plastid	38.02	48.81
KRH05614	Soybean	nucleus	36.36	47.96
KRH15427	Soybean	nucleus, plastid	35.54	47.25
Zm00001d021353_P002	Maize	mitochondrion, nucleus	19.21	46.5
KRH61375	Soybean	nucleus	31.41	46.48
KRH61369	Soybean	nucleus	29.13	43.12
KRH61371	Soybean	nucleus	30.99	42.98
KRH52055	Soybean	nucleus	31.61	42.74
TraesCS1A01G138300.1	Wheat	nucleus, plastid	46.07	42.48
KRH61373	Soybean	nucleus, plastid	32.23	41.6
Zm00001d010404_P001	Maize	nucleus	39.88	39.79
KRH61850	Soybean	nucleus	38.43	38.11
KRH66720	Soybean	endoplasmic reticulum, vacuole	15.5	37.69
KRH52524	Soybean	nucleus	36.36	37.53
KRH16044	Soybean	nucleus	34.92	36.66
KRH05060	Soybean	nucleus	34.3	36.17
KRH47513	Soybean	nucleus	34.71	35.29
KRH44391	Soybean	nucleus	33.47	34.39
KRH51329	Soybean	nucleus, plastid	25.0	29.16
KRH60628	Soybean	nucleus	24.17	28.89
KRH14611	Soybean	nucleus	25.83	28.47
KRH66718	Soybean	plastid	21.9	28.42
KRH66715	Soybean	nucleus	22.93	28.32
KRH73516	Soybean	nucleus	25.41	27.95
KRG95055	Soybean	nucleus	25.62	27.25
KRH76553	Soybean	nucleus	23.76	26.62
KRH66713	Soybean	nucleus	24.59	26.21
KRG95056	Soybean	cytosol	20.87	26.1
KRH28901	Soybean	nucleus	23.35	26.1
KRH44849	Soybean	nucleus	22.93	14.98

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.1	EntrezGene:547781	EMBL:ACUP02002770	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:Cyclin_C-dom	InterPro:Cyclin_N	EMBL:D50870	EnsemblPlantsGene:GLYMA_04G246600	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	EnsemblPlants:KRH64625	ProteinID:KRH64625	ProteinID:KRH64625.1	PFAM:PF00134
PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF239	UniProt:Q39879
SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI00000AA7C3	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:-:51404342..51407511

Molecular Weight (calculated)

53818.2 Da

IEP (calculated)

8.027

GRAVY (calculated)

-0.257

Length

484 amino acids

Sequence
(BLAST)

001: MSTQNRRSSF SSSTTSSLAK RHASASTTSS LAAAPTNMAK KRPPLSNLTN TVAHRNSSSS VPCAAKFAKT KKDVVPACSG NKRPTLANVK PASAVIFPKA
101: NSFPVKNEAP PTPPPPVATV TVPAPVVDVS PSKSDTMSVS TDESMSSCDS FKSPDIEYVD NSDVAAVDSI ERKTFSHLNI SDSTEGNICS REILVELEKG
201: DKFVNVDNNY ADPQLCATFA CDIYKHLRAS EAKKRPSTDF MEKIQKEINS SMRAILIDWL VEVAEEYRLV PDTLYLTVNY IDRYLSGNVM NRQRLQLLGV
301: ASMMIASKYE EICAPQVEEF CYITDNTYFK EEVLQMESAV LNFLKFEMTA PTVKCFLRRF VRAAQGVDEV PSLQLECLTN YIAELSLMEY SMLGYAPSLV
401: AASAIFLAKF ILFPSKKPWN STLQHYTLYQ PSDLCVCVKD LHRLCCNSPN SNLPAIREKY SQHKYKYVAK KYCPPSIPPE FFQN

Best Arabidopsis Sequence Match ( AT1G44110.1 )
(BLAST)

001: MSNILQNRRS SFSSSTKSSL AKRQAPSSSE NSVKLMPAMT KKRAPLSNIT NQKIASRLQN SDSVHCSNKS AKLKIAPSVC VNASFSSNLQ QSIVPHKVAS
101: SPSKSDDGSV SMDETRSSSD SYKSPQVEYI ENDDVSAVVS IERKALSNLF ITPNSETIDN YCSRDVLSDM KKMDKNQIVN IDSNNGDPQL CATFACDIYK
201: HLRASEAKKR PDVDYMERVQ KDVNSSMRGI LVDWLIEVSE EYRLVPETLY LTVNYIDRYL SGNVISRQKL QLLGVACMMI AAKYEEICAP QVEEFCYITD
301: NTYLKDEVLD MESDVLNYLK FEMTAPTTKC FLRRFVRAAH GVHEAPLMQL ECMANYIAEL SLLEYTMLSH SPSLVAASAI FLAKYILDPT RRPWNSTLQH
401: YTQYKAMELR GCVKDLQRLC STAHGSTLPA VREKYSQHKY KFVAKKFCPS VIPQEFFNNS

Arabidopsis Description

CYCA1-1CYCA1 [Source:UniProtKB/TrEMBL;Acc:A0A178W0H5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.