CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 5
mitochondrion 3
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG96582
KRG98402
KRH14166
KRH46483
KRH68317
KRH73962

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G16330.1	KRG96582	AT3G62240.1	20706207
AT1G16330.1	KRH68317	AT3G62240.1	20706207
AT1G16330.1	KRG98402	AT5G23810.1	20706207
AT1G16330.1	KRH14166	AT5G23810.1	20706207
AT1G16330.1	KRH46483	AT5G23810.1	20706207
AT1G16330.1	KRH73962	AT5G23810.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0085g00690.t01	Wine grape	nucleus	42.78	52.48
Bra026065.1-P	Field mustard	nucleus	34.55	50.59
CDY33338	Canola	nucleus	36.17	45.89
CDY35083	Canola	cytosol, endoplasmic reticulum, nucleus	36.57	44.5
AT1G16330.1	Thale cress	nucleus	38.46	43.98
CDX96819	Canola	nucleus	37.25	42.79
Bra016640.1-P	Field mustard	nucleus	36.98	41.83
CDX83953	Canola	nucleus	36.98	41.83
KRH66720	Soybean	endoplasmic reticulum, vacuole	10.39	38.69
Solyc07g066660.2.1	Tomato	nucleus	37.38	37.48
KRH66715	Soybean	nucleus	18.89	35.71
KRH14611	Soybean	nucleus	20.65	34.85
KRH60628	Soybean	nucleus	18.89	34.57
KRH73516	Soybean	nucleus	20.38	34.32
KRH51329	Soybean	nucleus, plastid	18.76	33.49
KRG95055	Soybean	nucleus	20.51	33.41
KRH76553	Soybean	nucleus	19.16	32.87
KRH66713	Soybean	nucleus	19.97	32.6
KRH28901	Soybean	nucleus	19.03	32.56
KRH66718	Soybean	plastid	16.33	32.44
KRG95056	Soybean	cytosol	16.87	32.3
KRH52056	Soybean	nucleus	8.64	30.33
KRH05614	Soybean	nucleus	13.9	28.07
KRH16044	Soybean	nucleus	17.0	27.33
KRH61371	Soybean	nucleus	12.82	27.22
KRH15427	Soybean	nucleus, plastid	13.23	26.92
KRH61375	Soybean	nucleus	11.34	25.69
KRH05060	Soybean	nucleus	15.79	25.49
KRH61369	Soybean	nucleus	11.07	25.08
KRH52524	Soybean	nucleus	15.65	24.73
KRH44391	Soybean	nucleus	15.65	24.63
KRH52055	Soybean	nucleus	11.88	24.58
KRH47513	Soybean	nucleus	15.79	24.58
KRH61373	Soybean	nucleus, plastid	12.28	24.27
KRH61850	Soybean	nucleus	15.92	24.18
KRH53279	Soybean	plastid	15.11	23.33
KRH64625	Soybean	plastid	14.98	22.93
KRH17986	Soybean	plastid	14.84	21.87
KRH16410	Soybean	plastid	14.44	21.23

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100808850	MapMan:13.1.1.1.2	EMBL:ACUP02004967	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:Cyclin_C-dom	InterPro:Cyclin_N	EnsemblPlantsGene:GLYMA_08G234900	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	UniProt:K7L8E0	EnsemblPlants:KRH44849	ProteinID:KRH44849	ProteinID:KRH44849.1	PFAM:PF00134
PFAM:PF02984	PANTHER:PTHR10177	PANTHER:PTHR10177:SF222	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954
UniParc:UPI000296E130	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:19714762..19726762

Molecular Weight (calculated)

81758.0 Da

IEP (calculated)

10.600

GRAVY (calculated)

-0.446

Length

741 amino acids

Sequence
(BLAST)

001: MVSLTGKSRV GSTRASVGGG QSRPSVGGRN FKVFSEIDRT KVGDGNMTYA RGAGASATAR STVVANKRVI LNSTSSPKGG LKKSMDKSSG KYGTSVGSTN
101: VRKALADVSN AQEKFTTAVV ANKGVILNST SNPKGGLKKS MDRSSGKYGT SGPGNTNVRK TLADVSNVQE NFTTAVGIAS SKMKVPAGSS SKIAGVSLRK
201: SFTGRVQRYT RKSVVQLDAL NRDDQKNNTN GGQSVNATKD RFTRKPIATS SSRKSLPVLR RVSREDTSNT KENVRSSQTA KGQSGLPTKA TTNRRDSSQL
301: INSRSHLWKY RVSDGFVQMV QPNVLHASSR KSTKPIVKTT IKAVTAQRTL KSKSRLSQNK LESTTATSSQ NKSLSAQKNL ESTTVTSSQD KESVSLSLPE
401: KSLTVSDDTN QSCLPSGESN LTTNLLELIP RKKSFRRKSY TTSLIEGSKI LKESGDVREQ DNLPNIDNEC NQLEVSEYID DIYLYYWVTE AHNPLLANYM
501: SIQTDISPHL RGILINWLIE VHFKFDLMPE TLYLTVTLLD QYLSLVTIKK TDMQLVGLTA LLLASKYEDF WHPRVKDLIS ISAESYTRDQ MLGMEKLILR
601: KLKFRLNAPT PYVFMVRFLK AAQSDKKLEH MAFFLVDLCL VEYEALAFKP SLLCASALYV ARCTLQITPP WTPLLHKHAR YEVSQIRDCA DMILKFHKAA
701: GVGKLKVIYE KYSRQELSRV AAVKPLDKLP WTPTTSQTST L

Best Arabidopsis Sequence Match ( AT1G16330.1 )
(BLAST)

001: MAFAKAPRLS RDDILGNRVS TRSFKIFSDN QKTDPASTIG TSQKKTRIPL RRKSVTISNG LGATSNTNNM KKENSRITGK GKSSIENWEE YTKVTRKALA
101: DLSNLGGNTL RIPTLCGSST MKWKGVKMAN PKRVSVGPTR ANNISVKKST KENVSKRTTE LGNNNLYKTG QKFIKNKTLS LGSTAGGTRK SLPTLKRTSL
201: TDKSLKKFNV SGLNSKQLGQ GLASKASNQA VPQLSSAGTY TWKTRTSVGS IQSDGNKQSK NNVRFVRKSI KIQTTVKTSL QNRSSLKKPP VGRSKSRSIS
301: SIPSSAVAST LSLPEKVETK CLEEDTQGES SSSGNKDPTT KVLDVTAKPK SKRRKSFTSL LVNGSKFDEK NGETTEPEKL PSIDDESNQL EVAEYVDDIY
401: QFYWTAEALN PALGHYLSAH AEVSPVTRGI LINWLIEVHF KFDLMHETLY LTMDLLDRYL SQVPIHKNEM QLIGLTALLL ASKYEDYWHP RIKDLISISA
501: ESYTREQILG MERSMLKQLK FRLNAPTPYV FMLRFLKAAQ SNKKLEQLAF YLIELCLVEY EALKYKPSLL CASAIYVARC TLHMTPVWTS LLNNHTHYNV
601: SQMKDCSDMI LRFHKAAKTG NLRVTYEKYI NPDRSNVAVL KPLDKLPL

Arabidopsis Description

CYCB3;1CYCB3 [Source:UniProtKB/TrEMBL;Acc:A0A178W969]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.