CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG94254
KRG94519
KRH06950
KRH20017
KRH41052
KRH54085
KRH57679
KRH63871

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G44110.1	KRH20017	AT5G07300.1	20706207
AT1G44110.1	KRH41052	AT5G07300.1	20706207
AT1G44110.1	KRH54085	AT5G07300.1	20706207
AT1G44110.1	KRH63871	AT5G07300.1	20706207
AT1G44110.1	KRG94254	AT5G14170.1	20706207
AT1G44110.1	KRG94519	AT5G14170.1	20706207
AT1G44110.1	KRH06950	AT5G14170.1	20706207
AT1G44110.1	KRH57679	AT5G14170.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH16410	Soybean	plastid	90.66	90.48
KRH53279	Soybean	plastid	67.4	70.62
KRH64625	Soybean	plastid	67.59	70.25
Os05t0237100-01	Rice	extracellular	25.65	65.48
VIT_18s0001g02060.t01	Wine grape	plastid	61.03	62.02
AT1G44110.1	Thale cress	plastid	56.46	61.74
Bra032202.1-P	Field mustard	plastid	49.7	59.24
Solyc11g005090.1.1	Tomato	plastid	57.26	58.78
Bra023606.1-P	Field mustard	plastid	48.91	58.71
CDY25649	Canola	plastid	50.89	58.58
PGSC0003DMT400015424	Potato	plastid	54.87	58.47
CDX85466	Canola	plastid	48.91	58.29
CDY02719	Canola	plastid	49.3	57.81
CDY65994	Canola	plastid	50.89	57.79
TraesCS1B01G151800.3	Wheat	nucleus	39.76	56.34
Os12t0298950-00	Rice	nucleus	49.5	55.7
Zm00001d032128_P001	Maize	cytosol	17.5	55.7
CDX87520	Canola	nucleus	41.55	54.15
CDX88368	Canola	plastid	40.76	53.95
GSMUA_Achr2P19220_001	Banana	nucleus, plastid	53.68	53.78
Bra015671.1-P	Field mustard	plastid	41.15	53.63
TraesCS3B01G183400.1	Wheat	plastid	54.27	53.53
TraesCS3D01G164600.1	Wheat	plastid	54.27	53.53
GSMUA_Achr5P06960_001	Banana	nucleus, plastid	53.08	53.4
CDY62408	Canola	nucleus, plasma membrane, plastid	22.27	53.08
KRH52056	Soybean	nucleus	22.27	53.08
TraesCS3A01G157000.1	Wheat	plastid	54.08	53.02
Os01t0233100-00	Rice	nucleus, plastid	51.69	52.95
Os01t0233500-01	Rice	nucleus, plastid	52.68	52.17
CDY41784	Canola	plastid	34.99	51.76
Zm00001d040381_P001	Maize	plastid	53.28	50.28
AT1G77390.1	Thale cress	plastid	43.74	49.77
TraesCS1D01G134100.2	Wheat	nucleus, plastid	45.92	48.43
CDX92090	Canola	mitochondrion, nucleus	33.6	47.34
Bra022173.1-P	Field mustard	nucleus, plastid	35.39	47.21
Zm00001d009011_P001	Maize	nucleus, plastid	47.71	47.06
KXG21616	Sorghum	nucleus, plastid	44.73	46.97
KRH05614	Soybean	nucleus	32.8	44.96
KRH15427	Soybean	nucleus, plastid	32.21	44.51
KRH61375	Soybean	nucleus	28.63	44.04
Zm00001d021353_P002	Maize	mitochondrion, nucleus	17.1	43.0
KRH61371	Soybean	nucleus	29.82	42.98
TraesCS1A01G138300.1	Wheat	nucleus, plastid	44.33	42.48
KRH61369	Soybean	nucleus	27.44	42.2
KRH52055	Soybean	nucleus	29.62	41.62
KRH61373	Soybean	nucleus, plastid	30.02	40.27
KRH66720	Soybean	endoplasmic reticulum, vacuole	15.51	39.2
Zm00001d010404_P001	Maize	nucleus	36.98	38.35
KRH61850	Soybean	nucleus	35.59	36.68
KRH52524	Soybean	nucleus	33.8	36.25
KRH16044	Soybean	nucleus	32.41	35.36
KRH47513	Soybean	nucleus	33.2	35.08
KRH05060	Soybean	nucleus	31.61	34.64
KRH44391	Soybean	nucleus	32.21	34.39
KRH14611	Soybean	nucleus	26.64	30.52
KRH73516	Soybean	nucleus	26.04	29.77
KRH66715	Soybean	nucleus	23.06	29.59
KRH60628	Soybean	nucleus	23.46	29.14
KRH51329	Soybean	nucleus, plastid	23.86	28.92
KRH66718	Soybean	plastid	21.27	28.69
KRG95055	Soybean	nucleus	25.84	28.57
KRH66713	Soybean	nucleus	25.05	27.75
KRG95056	Soybean	cytosol	20.68	26.87
KRH76553	Soybean	nucleus	22.27	25.93
KRH28901	Soybean	nucleus	22.07	25.64
KRH44849	Soybean	nucleus	21.87	14.84

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.1	EMBL:ACUP02008019	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom
InterPro:Cyclin_N	EnsemblPlantsGene:GLYMA_13G031500	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
UniProt:I1LXG2	EnsemblPlants:KRH17986	ProteinID:KRH17986	ProteinID:KRH17986.1	PFAM:PF00134	PFAM:PF02984
PIRSF:PIRSF001771	ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF239	SMART:SM00385	SMART:SM01332
SUPFAM:SSF47954	UniParc:UPI000233B4F5	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:10229246..10234028

Molecular Weight (calculated)

56144.7 Da

IEP (calculated)

8.027

GRAVY (calculated)

-0.335

Length

503 amino acids

Sequence
(BLAST)

001: MSSTTQNRRS SFTSSTASSL AKAKRHPSSV SSSSSGKAKV VSTQNLAVKR APLANLTNQR NAPYSSSSSS LVQGSNKVAK TKKEAPARTS VSKSTISGNK
101: SSQLKSVNSS SVVIPKANSL SQKKDAAPTV ATFAVPVRSG IDVSPSKSDG RFVSMDETTS SCDSIKSPDE VEYLDNRDVS DVDSIQKKII SNLNISDTTE
201: PEGNVCSREI IVELEERVDK IVNIDNIYSD TQLCATYVCD IYKHLRESEE KKRPSTDFMD TIQKDINVSM RAILVDWLVE VAEEYRLVPE TLYLTVNYLD
301: RYLSGNAMNR QRLQLLGVSC MMIASKYEEI CAPQVEEFRY ITDNTYLKEE VLQMESAVLN YLEFEMTAPT VKCFLRRFVR AAAHDVQEIP SLQLECLTNF
401: IAELSLLEYS MLCYPPSQIA ASAIFLARFI LFPSKKPWNS TLQHYTLYRP SDLCACVKDL HRLCCSSHDS NLPAIRDKYS QHKYKCVAKK CIPPSIPQEV
501: FQS

Best Arabidopsis Sequence Match ( AT1G44110.1 )
(BLAST)

001: MSNILQNRRS SFSSSTKSSL AKRQAPSSSE NSVKLMPAMT KKRAPLSNIT NQKIASRLQN SDSVHCSNKS AKLKIAPSVC VNASFSSNLQ QSIVPHKVAS
101: SPSKSDDGSV SMDETRSSSD SYKSPQVEYI ENDDVSAVVS IERKALSNLF ITPNSETIDN YCSRDVLSDM KKMDKNQIVN IDSNNGDPQL CATFACDIYK
201: HLRASEAKKR PDVDYMERVQ KDVNSSMRGI LVDWLIEVSE EYRLVPETLY LTVNYIDRYL SGNVISRQKL QLLGVACMMI AAKYEEICAP QVEEFCYITD
301: NTYLKDEVLD MESDVLNYLK FEMTAPTTKC FLRRFVRAAH GVHEAPLMQL ECMANYIAEL SLLEYTMLSH SPSLVAASAI FLAKYILDPT RRPWNSTLQH
401: YTQYKAMELR GCVKDLQRLC STAHGSTLPA VREKYSQHKY KFVAKKFCPS VIPQEFFNNS

Arabidopsis Description

CYCA1-1CYCA1 [Source:UniProtKB/TrEMBL;Acc:A0A178W0H5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.