Factsheet for Zm00001d010404_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 3
nucleus 2
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007039_P001
Zm00001d016615_P002
Zm00001d022322_P001
Zm00001d045433_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G44110.1	Zm00001d016615_P002	AT5G07300.1	20706207
AT1G44110.1	Zm00001d007039_P001	AT5G14170.1	20706207
AT1G44110.1	Zm00001d022322_P001	AT5G14170.1	20706207
AT1G44110.1	Zm00001d045433_P001	AT5G14170.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG21616	Sorghum	nucleus, plastid	76.29	77.24
TraesCS1B01G151800.3	Wheat	nucleus	37.53	51.27
Os05t0237100-01	Rice	extracellular	20.62	50.76
TraesCS1D01G134100.2	Wheat	nucleus, plastid	49.9	50.73
Zm00001d032128_P001	Maize	cytosol	15.88	48.73
TraesCS1A01G138300.1	Wheat	nucleus, plastid	50.52	46.67
Zm00001d040381_P001	Maize	plastid	48.25	43.9
VIT_18s0001g02080.t01	Wine grape	nucleus, plastid	32.16	42.16
Zm00001d019469_P001	Maize	extracellular	11.96	40.56
GSMUA_Achr5P06960_001	Banana	nucleus, plastid	41.24	40.0
KRH64625	Soybean	plastid	39.79	39.88
KRH53279	Soybean	plastid	38.97	39.38
CDY25649	Canola	plastid	35.46	39.36
Bra032202.1-P	Field mustard	plastid	34.23	39.34
Zm00001d021353_P002	Maize	mitochondrion, nucleus	16.08	39.0
VIT_18s0001g02060.t01	Wine grape	plastid	39.59	38.79
GSMUA_Achr2P19220_001	Banana	nucleus, plastid	40.0	38.65
CDY65994	Canola	plastid	35.05	38.37
CDX87520	Canola	nucleus	30.31	38.08
Zm00001d009011_P001	Maize	nucleus, plastid	39.79	37.84
AT1G44110.1	Thale cress	plastid	35.88	37.83
Bra015671.1-P	Field mustard	plastid	30.1	37.82
CDX85466	Canola	plastid	32.78	37.68
CDY02719	Canola	plastid	33.2	37.53
CDX88368	Canola	plastid	29.28	37.37
Bra023606.1-P	Field mustard	plastid	32.16	37.23
PGSC0003DMT400015424	Potato	plastid	36.08	37.08
CDY41784	Canola	plastid	25.98	37.06
KRH17986	Soybean	plastid	38.35	36.98
Solyc11g005090.1.1	Tomato	plastid	37.11	36.73
CDY62408	Canola	nucleus, plasma membrane, plastid	15.88	36.49
KRH16410	Soybean	plastid	37.53	36.11
AT1G77390.1	Thale cress	plastid	32.37	35.52
Bra022173.1-P	Field mustard	nucleus, plastid	27.42	35.28
Zm00001d013744_P001	Maize	nucleus	25.77	35.01
CDX92090	Canola	mitochondrion, nucleus	25.77	35.01
Zm00001d033365_P002	Maize	nucleus	26.6	34.68
Zm00001d030849_P001	Maize	nucleus	26.8	30.73
Zm00001d041334_P001	Maize	nucleus, plastid	26.8	29.75
Zm00001d014756_P006	Maize	nucleus, plastid	27.84	25.91
Zm00001d023732_P002	Maize	mitochondrion, nucleus, plastid	24.95	24.95
Zm00001d036360_P002	Maize	nucleus	21.65	24.76
Zm00001d026129_P001	Maize	nucleus	20.82	23.71
Zm00001d012560_P002	Maize	nucleus, plastid	20.82	22.49
Zm00001d002662_P010	Maize	nucleus	20.62	21.98
Zm00001d010656_P001	Maize	nucleus	19.18	20.85
Zm00001d043164_P002	Maize	nucleus	20.0	20.04
Zm00001d048127_P001	Maize	plastid	19.59	19.83
Zm00001d008221_P001	Maize	nucleus	18.76	19.0
Zm00001d020033_P001	Maize	nucleus	18.76	16.73
Zm00001d020996_P001	Maize	nucleus	18.35	16.36

Protein Annotations

Gene3D:1.10.472.10	MapMan:35.1	UniProt:A0A1D6FQS9	ProteinID:AQK93978.1	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:Cyclin_C-dom	InterPro:Cyclin_N	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF239
SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI0008DB34E7	EnsemblPlantsGene:Zm00001d010404	EnsemblPlants:Zm00001d010404_P001
EnsemblPlants:Zm00001d010404_T001	SEG:seg	:	:	:	:

Description

Cyclin superfamily protein%2C putative

Coordinates

chr8:-:113170632..113175869

Molecular Weight (calculated)

54766.5 Da

IEP (calculated)

5.933

GRAVY (calculated)

-0.182

Length

485 amino acids

Sequence
(BLAST)

001: MSCWAAGRRS SASAMAENTG ARGAKEAVVT SGKRVALGNL TNVFRGSWGS GAANSASDAK LSSTKPDDVK KGSYACLRNV NTERGSSRRL ASEQFDQAVS
101: LLQKNTSLPS VPDVVSTGCS SPGLSQDCSV SMEDAMSTCN STESSDVEYL NNNDDPSMTS SSHWWASDRP HFSDSMDVAE FNWRKHSPNH YTYKDPRLST
201: TLACEIYESL REAETRKMPP TNFLETTQTD MSKTMRAILI DWLVEVTEEY RLVPETLYLT VNYIDRYLSV KEISRHRLQL VGVACLLIAA RFVHMMIEEY
301: EVREALKMIR EGKVISSNVI LIEERVIEHG LRGTTRIFLN QFGFMLERKY EEICPPLVEE LCYITDYSYT KEEVLQMEAS VLNNLKFEMT VPTAKCFLRR
401: FVRVAQVPDK GSSLHLEFLV NYICELSLLE YSLLCYLPSM VAASSVFLAK FILMPIKNPW VYVPNLIFYE SSLLNSMFAF FTPKT

Best Arabidopsis Sequence Match ( AT1G44110.1 )
(BLAST)

001: MSNILQNRRS SFSSSTKSSL AKRQAPSSSE NSVKLMPAMT KKRAPLSNIT NQKIASRLQN SDSVHCSNKS AKLKIAPSVC VNASFSSNLQ QSIVPHKVAS
101: SPSKSDDGSV SMDETRSSSD SYKSPQVEYI ENDDVSAVVS IERKALSNLF ITPNSETIDN YCSRDVLSDM KKMDKNQIVN IDSNNGDPQL CATFACDIYK
201: HLRASEAKKR PDVDYMERVQ KDVNSSMRGI LVDWLIEVSE EYRLVPETLY LTVNYIDRYL SGNVISRQKL QLLGVACMMI AAKYEEICAP QVEEFCYITD
301: NTYLKDEVLD MESDVLNYLK FEMTAPTTKC FLRRFVRAAH GVHEAPLMQL ECMANYIAEL SLLEYTMLSH SPSLVAASAI FLAKYILDPT RRPWNSTLQH
401: YTQYKAMELR GCVKDLQRLC STAHGSTLPA VREKYSQHKY KFVAKKFCPS VIPQEFFNNS

Arabidopsis Description

CYCA1-1CYCA1 [Source:UniProtKB/TrEMBL;Acc:A0A178W0H5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.