Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- nucleus 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d019469_P001 | Maize | extracellular | 26.3 | 88.11 |
| EES02793 | Sorghum | nucleus | 83.51 | 86.39 |
| Zm00001d020033_P001 | Maize | nucleus | 90.61 | 79.78 |
| Zm00001d020996_P001 | Maize | nucleus | 90.19 | 79.41 |
| Os01t0281200-01 | Rice | nucleus | 58.66 | 66.43 |
| TraesCS3D01G195200.1 | Wheat | plastid | 54.49 | 63.2 |
| TraesCS3A01G192100.1 | Wheat | nucleus, plastid | 54.49 | 63.04 |
| Os02t0627800-00 | Rice | cytosol, mitochondrion, peroxisome | 45.09 | 54.55 |
| HORVU3Hr1G040990.2 | Barley | nucleus, plastid | 54.49 | 53.05 |
| KRH66720 | Soybean | endoplasmic reticulum, vacuole | 19.62 | 47.24 |
| VIT_06s0009g02090.t01 | Wine grape | nucleus | 38.83 | 44.5 |
| KRH66715 | Soybean | nucleus | 36.12 | 44.13 |
| PGSC0003DMT400015245 | Potato | nucleus | 40.29 | 43.96 |
| PGSC0003DMT400058457 | Potato | nucleus | 38.2 | 43.78 |
| PGSC0003DMT400018480 | Potato | nucleus | 38.83 | 43.76 |
| VIT_08s0040g00930.t01 | Wine grape | nucleus | 41.34 | 43.71 |
| Solyc06g073610.2.1 | Tomato | nucleus | 39.87 | 43.41 |
| Solyc10g078330.1.1 | Tomato | nucleus | 38.2 | 43.26 |
| AT2G26760.1 | Thale cress | nucleus | 34.86 | 43.15 |
| AT3G11520.1 | Thale cress | nucleus | 37.16 | 43.0 |
| KRG95055 | Soybean | nucleus | 40.71 | 42.86 |
| Solyc01g009040.2.1 | Tomato | nucleus | 38.41 | 42.3 |
| KRH66713 | Soybean | nucleus | 39.87 | 42.07 |
| Bra002046.1-P | Field mustard | nucleus | 34.45 | 41.98 |
| Bra028741.1-P | Field mustard | nucleus | 36.33 | 41.93 |
| Zm00001d012560_P002 | Maize | nucleus, plastid | 39.25 | 41.87 |
| VIT_13s0067g01420.t01 | Wine grape | nucleus | 40.08 | 41.56 |
| CDX69311 | Canola | nucleus | 36.33 | 41.53 |
| KRH14611 | Soybean | nucleus | 38.0 | 41.46 |
| CDY69551 | Canola | nucleus | 30.69 | 41.41 |
| KRH73516 | Soybean | nucleus | 37.79 | 41.14 |
| CDY62475 | Canola | nucleus | 30.06 | 41.03 |
| Bra011769.1-P | Field mustard | nucleus | 36.53 | 40.89 |
| Bra005880.1-P | Field mustard | nucleus, plastid | 35.28 | 40.82 |
| CDX75659 | Canola | nucleus | 36.33 | 40.65 |
| KRH66718 | Soybean | plastid | 31.52 | 40.48 |
| AT5G06150.1 | Thale cress | nucleus | 37.37 | 40.22 |
| Solyc10g080950.1.1 | Tomato | nucleus | 38.62 | 40.04 |
| CDX80988 | Canola | plastid | 35.7 | 39.95 |
| AT4G37490.1 | Thale cress | nucleus | 35.7 | 39.95 |
| CDY11354 | Canola | plastid | 35.91 | 39.72 |
| Zm00001d010656_P001 | Maize | nucleus | 36.95 | 39.69 |
| PGSC0003DMT400072211 | Potato | nucleus | 38.41 | 39.66 |
| Zm00001d043164_P002 | Maize | nucleus | 39.67 | 39.26 |
| KRG95056 | Soybean | cytosol | 30.27 | 37.47 |
| Zm00001d026129_P001 | Maize | nucleus | 31.94 | 35.92 |
| Zm00001d036360_P002 | Maize | nucleus | 30.27 | 34.2 |
| Zm00001d002662_P010 | Maize | nucleus | 32.36 | 34.07 |
| Zm00001d032128_P001 | Maize | cytosol | 8.98 | 27.22 |
| Zm00001d033365_P002 | Maize | nucleus | 21.09 | 27.15 |
| CDY14091 | Canola | plastid | 36.53 | 26.68 |
| Zm00001d013744_P001 | Maize | nucleus | 19.83 | 26.61 |
| AT1G34460.5 | Thale cress | cytosol | 26.51 | 25.5 |
| CDY04980 | Canola | nucleus | 35.91 | 23.96 |
| Zm00001d030849_P001 | Maize | nucleus | 20.67 | 23.4 |
| Zm00001d041334_P001 | Maize | nucleus, plastid | 20.88 | 22.88 |
| Zm00001d014756_P006 | Maize | nucleus, plastid | 24.22 | 22.26 |
| Zm00001d021353_P002 | Maize | mitochondrion, nucleus | 8.98 | 21.5 |
| Zm00001d040381_P001 | Maize | plastid | 22.96 | 20.64 |
| Zm00001d023732_P002 | Maize | mitochondrion, nucleus, plastid | 20.88 | 20.62 |
| Zm00001d009011_P001 | Maize | nucleus, plastid | 21.09 | 19.8 |
| Zm00001d010404_P001 | Maize | nucleus | 19.0 | 18.76 |
| Zm00001d048127_P001 | Maize | plastid | 18.58 | 18.58 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.2 | EntrezGene:542345 | ProteinID:AQK89219.1 | UniProt:B8A2G9 | EMBL:BT055761 |
| InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF211 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI00019176DE | EnsemblPlantsGene:Zm00001d008221 |
| EnsemblPlants:Zm00001d008221_P001 | EnsemblPlants:Zm00001d008221_T001 | SEG:seg | : | : | : |
Description
cyclin5 cyclin5
Coordinates
chr8:+:1656468..1659625
Molecular Weight (calculated)
53336.2 Da
IEP (calculated)
9.473
GRAVY (calculated)
-0.199
Length
479 amino acids
Sequence
(BLAST)
(BLAST)
001: MECARELRVR STFTAAAMAS KKQVGPGGAV PAQEQMNGGD AARLVRKPMD TFPQPAAARG RRALVDVGNL MNGRPSLVNH QKQAVAAAAT SHKPLNVGNK
101: KPLVPQAAAR GLRPLADVTN LMIKDRAAPA NRQKPVDAVF NRNGKAVKLK ECKVKPEVIV IIPDSEKEKK GKFPGGQRVC RRVPTLFDNL TKCSRASDGI
201: TTPKKKDPYD IDAPDSCNEL AVVEYVEDIY RFYKSTEGTC LPLSSYMSSQ AEISERMRAI LIDWIIEVQY RLTLMPETLY LTVYIIDQYL SMESVPRKEL
301: QLVGISAMLI ASKYEEIWAP LVKDLMCLCD NAFTRDQILT KEKAILDMLH WNLTVPTMYM FIVRYLKAAM CDTELENMTF FYSELALVQY AMLVYPPSVT
401: AAAAVYAARS TLGMNPQWTD ILEHHTGLAE PQLLDCARRL ISFHALAPES KQKAVYRKYS KPKLGSVALQ SPDKKLLSG
101: KPLVPQAAAR GLRPLADVTN LMIKDRAAPA NRQKPVDAVF NRNGKAVKLK ECKVKPEVIV IIPDSEKEKK GKFPGGQRVC RRVPTLFDNL TKCSRASDGI
201: TTPKKKDPYD IDAPDSCNEL AVVEYVEDIY RFYKSTEGTC LPLSSYMSSQ AEISERMRAI LIDWIIEVQY RLTLMPETLY LTVYIIDQYL SMESVPRKEL
301: QLVGISAMLI ASKYEEIWAP LVKDLMCLCD NAFTRDQILT KEKAILDMLH WNLTVPTMYM FIVRYLKAAM CDTELENMTF FYSELALVQY AMLVYPPSVT
401: AAAAVYAARS TLGMNPQWTD ILEHHTGLAE PQLLDCARRL ISFHALAPES KQKAVYRKYS KPKLGSVALQ SPDKKLLSG
001: MATRANVPEQ VRGAPLVDGL KIQNKNGAVK SRRALGDIGN LVSVPGVQGG KAQPPINRPI TRSFRAQLLA NAQLERKPIN GDNKVPALGP KRQPLAARNP
101: EAQRAVQKKN LVVKQQTKPV EVIETKKEVT KKEVAMSPKN KKVTYSSVLS ARSKAACGIV NKPKIIDIDE SDKDNHLAAV EYVDDMYSFY KEVEKESQPK
201: MYMHIQTEMN EKMRAILIDW LLEVHIKFEL NLETLYLTVN IIDRFLSVKA VPKRELQLVG ISALLIASKY EEIWPPQVND LVYVTDNAYS SRQILVMEKA
301: ILGNLEWYLT VPTQYVFLVR FIKASMSDPE MENMVHFLAE LGMMHYDTLT FCPSMLAASA VYTARCSLNK SPAWTDTLQF HTGYTESEIM DCSKLLAFLH
401: SRCGESRLRA VYKKYSKAEN GGVAMVSPAK SLLSAAADWK KPVSS
101: EAQRAVQKKN LVVKQQTKPV EVIETKKEVT KKEVAMSPKN KKVTYSSVLS ARSKAACGIV NKPKIIDIDE SDKDNHLAAV EYVDDMYSFY KEVEKESQPK
201: MYMHIQTEMN EKMRAILIDW LLEVHIKFEL NLETLYLTVN IIDRFLSVKA VPKRELQLVG ISALLIASKY EEIWPPQVND LVYVTDNAYS SRQILVMEKA
301: ILGNLEWYLT VPTQYVFLVR FIKASMSDPE MENMVHFLAE LGMMHYDTLT FCPSMLAASA VYTARCSLNK SPAWTDTLQF HTGYTESEIM DCSKLLAFLH
401: SRCGESRLRA VYKKYSKAEN GGVAMVSPAK SLLSAAADWK KPVSS
Arabidopsis Description
CYCB1-2Cyclin-B1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q39067]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.