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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra007622.1-P
Bra009216.1-P
Bra010457.1-P
Bra010722.1-P
Bra013899.1-P
Bra015456.1-P
Bra019155.1-P
Bra022063.1-P
Bra024996.1-P
Bra028722.1-P
Bra030816.1-P
Bra033582.1-P
Bra040785.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G11520.1 Bra015456.1-P AT1G05805.1 20706207
AT3G11520.1 Bra030816.1-P AT1G56110.1 20706207
AT3G11520.1 Bra040785.1-P AT1G56110.1 20706207
AT3G11520.1 Bra007622.1-P AT3G61650.1 20706207
AT3G11520.1 Bra010457.1-P AT4G25550.1 20706207
AT3G11520.1 Bra013899.1-P AT4G25550.1 20706207
AT3G11520.1 Bra019155.1-P AT4G25550.1 20706207
AT3G11520.1 Bra010722.1-P AT4G38900.1 20706207
AT3G11520.1 Bra033582.1-P AT4G38900.1 20706207
AT3G11520.1 Bra009216.1-P AT5G06680.1 20706207
AT3G11520.1 Bra028722.1-P AT5G06680.1 20706207
AT3G11520.1 Bra022063.1-P AT5G46780.1 20706207
AT3G11520.1 Bra024996.1-P AT5G46780.1 20706207
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY62475 Canola nucleus 83.72 93.73
CDY69551 Canola nucleus 84.48 93.52
AT3G11520.1 Thale cress nucleus 78.88 74.88
Bra028741.1-P Field mustard nucleus 70.23 66.51
Bra005880.1-P Field mustard nucleus, plastid 68.96 65.46
TraesCSU01G217300.1 Wheat cytosol 31.81 57.87
KRH66720 Soybean endoplasmic reticulum, vacuole 28.5 56.28
GSMUA_AchrUn_... Banana nucleus 38.93 51.34
KRH66715 Soybean nucleus 51.15 51.28
Bra011769.1-P Field mustard nucleus 55.47 50.93
Zm00001d019469_P001 Maize extracellular 18.32 50.35
VIT_08s0040g00930.t01 Wine grape nucleus 57.76 50.11
KRG95055 Soybean nucleus 58.02 50.11
KRH66713 Soybean nucleus 57.25 49.56
KXG24389 Sorghum nucleus 31.55 49.21
PGSC0003DMT400018480 Potato nucleus 52.67 48.71
Solyc10g078330.1.1 Tomato nucleus 52.42 48.7
VIT_13s0067g01420.t01 Wine grape nucleus 56.23 47.84
HORVU0Hr1G001680.1 Barley nucleus 38.93 47.81
Solyc10g080950.1.1 Tomato nucleus 55.73 47.4
PGSC0003DMT400072211 Potato nucleus 55.22 46.77
GSMUA_Achr4P10090_001 Banana nucleus 50.38 46.59
GSMUA_Achr3P24980_001 Banana nucleus 47.33 46.27
KRH66718 Soybean plastid 43.77 46.11
GSMUA_Achr8P23970_001 Banana nucleus 50.64 45.75
GSMUA_Achr7P21380_001 Banana nucleus 53.18 45.73
GSMUA_Achr10P... Banana nucleus 52.67 45.7
HORVU1Hr1G068080.1 Barley plastid 39.44 45.32
HORVU3Hr1G078880.2 Barley nucleus 51.65 44.81
TraesCS3D01G326600.1 Wheat nucleus 51.4 44.4
EES03772 Sorghum nucleus, plastid 50.64 44.32
Zm00001d012560_P002 Maize nucleus, plastid 50.64 44.32
TraesCS3A01G333000.2 Wheat nucleus 51.65 44.13
TraesCS1D01G309300.1 Wheat nucleus, plastid 48.85 44.04
TraesCS3B01G363200.3 Wheat nucleus 51.65 44.03
KRG95056 Soybean cytosol 43.0 43.67
TraesCS1A01G309800.1 Wheat nucleus 48.35 43.58
TraesCS1B01G320900.1 Wheat nucleus, plastid 48.09 43.35
TraesCS1D01G309400.1 Wheat nucleus 46.56 41.88
HORVU1Hr1G068160.2 Barley nucleus, plastid 47.07 41.76
HORVU0Hr1G026010.1 Barley nucleus, plastid 47.07 41.76
HORVU1Hr1G068010.7 Barley mitochondrion, nucleus 44.53 41.67
Os01t0281200-01 Rice nucleus 44.27 41.13
TraesCS1B01G321000.1 Wheat nucleus 45.55 41.05
TraesCS3D01G195200.1 Wheat plastid 42.75 40.68
HORVU0Hr1G001690.16 Barley nucleus, peroxisome 44.78 40.18
Zm00001d010656_P001 Maize nucleus 45.55 40.13
TraesCS3A01G192100.1 Wheat nucleus, plastid 42.24 40.1
Zm00001d043164_P002 Maize nucleus 49.36 40.08
TraesCS7A01G229300.1 Wheat endoplasmic reticulum 32.82 39.21
EES18429 Sorghum mitochondrion 45.04 38.48
Os05t0493500-00 Rice nucleus 45.8 36.96
Bra024504.1-P Field mustard nucleus 38.93 36.52
EES02793 Sorghum nucleus 42.49 36.07
Bra037265.1-P Field mustard nucleus 37.15 35.7
Bra017726.1-P Field mustard nucleus 36.39 35.22
Os02t0627800-00 Rice cytosol, mitochondrion, peroxisome 34.86 34.6
Bra003727.1-P Field mustard nucleus 33.59 34.46
Zm00001d008221_P001 Maize nucleus 41.98 34.45
Bra016460.1-P Field mustard nucleus 35.88 34.39
Bra015762.1-P Field mustard nucleus 37.4 34.11
HORVU3Hr1G040990.2 Barley nucleus, plastid 42.49 33.94
Bra025831.1-P Field mustard nucleus 35.37 33.9
Bra032220.1-P Field mustard nucleus 30.79 33.89
Bra040753.1-P Field mustard nucleus, plastid 30.79 33.33
Bra040793.1-P Field mustard nucleus 29.77 32.23
Bra033658.1-P Field mustard nucleus 29.01 32.02
Bra040792.1-P Field mustard nucleus, plastid 29.01 31.32
Bra040710.1-P Field mustard nucleus 29.26 31.0
Zm00001d020033_P001 Maize nucleus 41.22 29.78
Zm00001d020996_P001 Maize nucleus 40.2 29.04
Bra015671.1-P Field mustard plastid 27.99 28.5
Bra000822.1-P Field mustard nucleus 27.23 28.38
Bra023606.1-P Field mustard plastid 30.03 28.16
Bra022173.1-P Field mustard nucleus, plastid 26.97 28.12
Bra032202.1-P Field mustard plastid 30.03 27.96
Bra031463.1-P Field mustard nucleus 25.95 27.64
Bra026065.1-P Field mustard nucleus 34.61 26.88
Bra026756.1-P Field mustard plastid 27.74 26.65
Bra003563.1-P Field mustard plastid 27.74 25.23
Bra016654.1-P Field mustard nucleus, plastid 27.99 24.72
Bra008973.1-P Field mustard nucleus, plastid 27.23 24.49
Bra026120.1-P Field mustard nucleus 28.24 23.82
Bra008477.1-P Field mustard plastid 27.48 23.63
Bra035186.1-P Field mustard plastid 27.23 23.16
Bra016640.1-P Field mustard nucleus 34.35 20.61
Bra036544.1-P Field mustard nucleus 28.75 11.45
Protein Annotations
Gene3D:1.10.472.10MapMan:13.1.1.1.2EnsemblPlantsGene:Bra002046EnsemblPlants:Bra002046.1EnsemblPlants:Bra002046.1-Pncoils:Coil
InterPro:Cyclin-likeInterPro:Cyclin-like_sfInterPro:Cyclin_C-domInterPro:Cyclin_NGO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634UniProt:M4CCW5PFAM:PF00134PFAM:PF02984PIRSF:PIRSF001771
ScanProsite:PS00292PANTHER:PTHR10177PANTHER:PTHR10177:SF267SMART:SM00385SMART:SM01332SUPFAM:SSF47954
UniParc:UPI0002543EF1SEG:seg::::
Description
AT3G11520 (E=5e-142) CYCB1;3, CYC2 | CYCB1;3 (CYCLIN B1;3); cyclin-dependent protein kinase regulator
Coordinates
chrA10:+:11946698..11948205
Molecular Weight (calculated)
44078.2 Da
IEP (calculated)
8.625
GRAVY (calculated)
-0.184
Length
393 amino acids
Sequence
(BLAST)
001: MATRRVRGDP VENRRALGDI GNIASLPGGI EEAGKLNRPL TRNFRAQLLE NANKKEGVRA VQRKARAAVV VKPTQTHEVI VISPDTNEVA KAKKNVTYSS
101: VLNARSKAAS KSLDIDSADK DNDLAAVEYV EDMYSFYKEV ENESKPQMYM QTQTEINEKM RSILVDWLLD VHVKFDLSPE TLYLTINIID RFLSLKPVPR
201: RELQLVGVSA LLIASKYEEI WPPQVNDLVY VTGNSYQSKQ ILVMEKTILG NLEWYLTVPT QYVFLARFIK AAVPDPEMEN MVHFLAELGL MHYDALKFCP
301: SMLAASAVYA ARCFLSKTPA WTETLTFHTG YSEHELMECS KLLAFIHSRV GESKLRAVFK KYSKAERCAV ALVSSPAKSP LLSSSASCSL EKS
Best Arabidopsis Sequence Match ( AT3G11520.1 )
(BLAST)
001: MATGPVVHPQ PVRGDPIDLK NAAAKNRRAL GDIGNVDSLI GVEGGKLNRP ITRNFRAQLL ENAQVAAAAN KKAPILDGVT KKQEVVRAVQ KKARGDKREP
101: SKPIEVIVIS PDTNEVAKAK ENKKKVTYSS VLDARSKAAS KTLDIDYVDK ENDLAAVEYV EDMYIFYKEV VNESKPQMYM HTQPEIDEKM RSILIDWLVE
201: VHVKFDLSPE TLYLTVNIID RFLSLKTVPR RELQLVGVSA LLIASKYEEI WPPQVNDLVY VTDNSYNSRQ ILVMEKTILG NLEWYLTVPT QYVFLVRFIK
301: ASGSDQKLEN LVHFLAELGL MHHDSLMFCP SMLAASAVYT ARCCLNKTPT WTDTLKFHTG YSESQLMDCS KLLAFIHSKA GESKLRGVLK KYSKLGRGAV
401: ALISPAKSLM SSAP
Arabidopsis Description
CYCB1-3Cyclin-B1-3 [Source:UniProtKB/Swiss-Prot;Acc:Q39069]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.