Factsheet for Bra024504.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra015735.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17620.1	Bra015735.1-P	AT1G76540.1	12857813

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29184	Canola	nucleus	100.0	100.0
Bra037265.1-P	Field mustard	nucleus	81.38	83.37
AT2G17620.1	Thale cress	nucleus	84.49	82.52
Bra017726.1-P	Field mustard	nucleus	69.93	72.17
KRH28901	Soybean	nucleus	61.81	59.82
KRH76553	Soybean	nucleus	61.58	59.72
Bra003727.1-P	Field mustard	nucleus	51.07	55.87
PGSC0003DMT400093973	Potato	nucleus	43.91	55.76
Solyc02g061650.1.1	Tomato	nucleus	46.3	55.27
GSMUA_Achr5P19270_001	Banana	cytosol	28.16	54.38
Bra016460.1-P	Field mustard	nucleus	52.51	53.66
Bra015762.1-P	Field mustard	nucleus	54.65	53.13
GSMUA_Achr11P...	Banana	nucleus	51.07	52.45
Bra025831.1-P	Field mustard	nucleus	51.07	52.2
GSMUA_Achr8P13320_001	Banana	nucleus	51.79	51.67
Os06t0726800-01	Rice	nucleus	50.84	50.84
TraesCS2B01G422800.1	Wheat	nucleus	49.16	50.37
HORVU0Hr1G022770.1	Barley	nucleus, plastid	33.41	50.36
KXG20945	Sorghum	nucleus	50.84	50.24
GSMUA_Achr5P19110_001	Banana	nucleus	50.84	50.24
TraesCS2A01G404800.1	Wheat	nucleus	48.45	50.12
Os04t0563700-01	Rice	mitochondrion	50.12	50.0
Zm00001d026129_P001	Maize	nucleus	49.88	49.06
Zm00001d036360_P002	Maize	nucleus	49.64	49.06
HORVU7Hr1G121820.6	Barley	nucleus	49.16	49.05
TraesCS2D01G401700.1	Wheat	nucleus, plastid	48.93	48.69
TraesCS7B01G472800.1	Wheat	nucleus	48.69	48.69
TraesCS7D01G536000.1	Wheat	nucleus	48.69	48.69
EES12664	Sorghum	nucleus	50.12	48.61
TraesCS7A01G549500.1	Wheat	nucleus	48.45	48.45
Zm00001d002662_P010	Maize	nucleus	48.45	44.62
HORVU2Hr1G096070.2	Barley	nucleus	47.97	42.68
Bra002046.1-P	Field mustard	nucleus	36.52	38.93
Bra028741.1-P	Field mustard	nucleus	38.19	38.55
Bra005880.1-P	Field mustard	nucleus, plastid	37.71	38.16
Bra011769.1-P	Field mustard	nucleus	34.61	33.88
GSMUA_Achr11P...	Banana	endoplasmic reticulum, vacuole	53.94	33.83
Bra040793.1-P	Field mustard	nucleus	28.88	33.33
Bra032220.1-P	Field mustard	nucleus	28.4	33.33
Bra040753.1-P	Field mustard	nucleus, plastid	28.16	32.51
Bra040792.1-P	Field mustard	nucleus, plastid	28.16	32.42
Bra040710.1-P	Field mustard	nucleus	28.64	32.34
Bra033658.1-P	Field mustard	nucleus	26.73	31.46
Bra015671.1-P	Field mustard	plastid	28.16	30.57
Bra031463.1-P	Field mustard	nucleus	26.73	30.35
Bra000822.1-P	Field mustard	nucleus	27.21	30.24
Bra026756.1-P	Field mustard	plastid	29.36	30.07
Bra023606.1-P	Field mustard	plastid	29.12	29.12
Bra008973.1-P	Field mustard	nucleus, plastid	29.59	28.38
Bra032202.1-P	Field mustard	plastid	27.68	27.49
Bra016654.1-P	Field mustard	nucleus, plastid	29.12	27.42
Bra003563.1-P	Field mustard	plastid	27.92	27.08
Bra022173.1-P	Field mustard	nucleus, plastid	24.11	26.79
Bra026120.1-P	Field mustard	nucleus	28.88	25.97
Bra026065.1-P	Field mustard	nucleus	31.26	25.89
Bra008477.1-P	Field mustard	plastid	27.21	24.95
Bra035186.1-P	Field mustard	plastid	26.49	24.03
Bra016640.1-P	Field mustard	nucleus	33.89	21.68
Bra036544.1-P	Field mustard	nucleus	27.68	11.75

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.2	EnsemblPlantsGene:Bra024504	EnsemblPlants:Bra024504.1	EnsemblPlants:Bra024504.1-P	InterPro:Cyclin-like
InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	UniProt:M4E6U9	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292
PANTHER:PTHR10177	PANTHER:PTHR10177:SF336	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI000253F00A
SEG:seg	:	:	:	:	:

Description

AT2G17620 (E=3e-173) CYCB2;1 | CYCB2;1 (Cyclin B2;1); cyclin-dependent protein kinase regulator

Coordinates

chrA06:-:16253268..16255187

Molecular Weight (calculated)

48151.2 Da

IEP (calculated)

5.097

GRAVY (calculated)

-0.297

Length

419 amino acids

Sequence
(BLAST)

001: MVNSCENNNN IVVEPTKTMI LQDETRSRKV GQEMKRRVLG EINQNLVGAR GYPCVVNKRG YLSKQEEGCQ KKKPDPLRSS ITRSRVAEPL CQDEEEKKKL
101: KPTVPSADDE EEATLDQPVP MSLEKPYTEA DDPMEEVEME DVIVEEEPIL DIDVSDAKNS LAAVEYVQDL YAFHREMERF SCVPVDYMMQ QIDLNERMRA
201: ILIDWLIEVH DKFDLMSETL FLTVNLIDRF LSKKAVLRKK LQLVGLVALL LACKYEEVSV PLVEDLVLIS DRAYTRTDVL HMEKTMLSTL QFNVSLPTQY
301: PFLRRFLKAA QADKKCEVLA SFLMELALVE YEMLRFPPSL LAATAVYTAQ CTLDGFRKWN TTCEFHSHYS EDQLMECCRK MVSLHQRAAT GKLTGVYRKY
401: STFKFGYIAK SEAAHFLVS

Best Arabidopsis Sequence Match ( AT2G17620.1 )
(BLAST)

001: MVNSCENKIF VKPTSTTILQ DETRSRKFGQ EMKREKRRVL RVINQNLAGA RVYPCVVNKR GSLLSNKQEE EEGCQKKKFD SLRPSVTRSG VEEETNKKLK
101: PSVPSANDFG DCIFIDEEEA TLDLPMPMSL EKPYIEADPM EEVEMEDVTV EEPIVDIDVL DSKNSLAAVE YVQDLYAFYR TMERFSCVPV DYMMQQIDLN
201: EKMRAILIDW LIEVHDKFDL INETLFLTVN LIDRFLSKQN VMRKKLQLVG LVALLLACKY EEVSVPVVED LVLISDKAYT RNDVLEMEKT MLSTLQFNIS
301: LPTQYPFLKR FLKAAQADKK CEVLASFLIE LALVEYEMLR FPPSLLAATS VYTAQCTLDG SRKWNSTCEF HCHYSEDQLM ECSRKLVSLH QRAATGNLTG
401: VYRKYSTSKF GYIAKCEAAH FLVSESHHS

Arabidopsis Description

CYCB2-1Cyclin-B2-1 [Source:UniProtKB/Swiss-Prot;Acc:Q39068]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.