Factsheet for Bra000822.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005565.1-P	nucleus
Bra021808.1-P	nucleus
Bra022897.1-P	nucleus
Bra039199.1-P	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G80370.1	Bra039199.1-P	AT2G23430.1	20018602
AT1G80370.1	Bra005565.1-P	AT2G32710.1	20018602
AT1G80370.1	Bra021808.1-P	AT2G32710.1	20018602
AT1G80370.1	Bra022897.1-P	AT2G32710.1	20018602

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY61993	Canola	nucleus	96.55	96.55
Bra031463.1-P	Field mustard	nucleus	86.74	88.62
Bra003563.1-P	Field mustard	plastid	77.19	67.36
AT1G80370.1	Thale cress	plastid	79.84	65.29
GSMUA_Achr1P14000_001	Banana	nucleus, plasma membrane, plastid	41.91	63.97
Bra008477.1-P	Field mustard	plastid	77.45	63.9
Bra026756.1-P	Field mustard	plastid	68.44	63.08
Bra035186.1-P	Field mustard	plastid	73.21	59.74
Bra016654.1-P	Field mustard	nucleus, plastid	69.5	58.88
Bra026120.1-P	Field mustard	nucleus	70.82	57.3
VIT_09s0002g05240.t01	Wine grape	nucleus	63.13	48.57
KRH47513	Soybean	nucleus	60.74	48.11
Solyc03g120440.1.1	Tomato	nucleus, plastid	56.23	46.29
KRH44391	Soybean	nucleus	57.56	46.07
PGSC0003DMT400006576	Potato	nucleus	56.5	46.0
Bra008973.1-P	Field mustard	nucleus, plastid	51.19	44.16
Os12t0502300-01	Rice	nucleus, plastid	56.76	43.67
Bra033658.1-P	Field mustard	nucleus	40.85	43.26
OQU77084	Sorghum	nucleus	55.44	42.83
TraesCS5B01G114300.2	Wheat	plastid	56.5	42.01
TraesCS5A01G108500.2	Wheat	plastid	56.5	41.93
TraesCS5D01G121100.2	Wheat	plastid	56.5	41.93
TraesCSU01G054300.1	Wheat	nucleus	55.7	41.92
Bra040792.1-P	Field mustard	nucleus, plastid	40.05	41.48
TraesCS3A01G523600.1	Wheat	plastid	55.7	41.42
TraesCS3D01G529100.1	Wheat	plastid	55.44	41.39
Bra040710.1-P	Field mustard	nucleus	40.58	41.24
Bra032220.1-P	Field mustard	nucleus	38.73	40.9
HORVU3Hr1G114440.21	Barley	nucleus, plastid	54.91	40.83
Bra040793.1-P	Field mustard	nucleus	38.99	40.5
GSMUA_Achr3P25340_001	Banana	nucleus	58.09	40.41
KXG23504	Sorghum	mitochondrion, nucleus	51.72	40.37
Bra040753.1-P	Field mustard	nucleus, plastid	38.73	40.22
Zm00001d023732_P002	Maize	mitochondrion, nucleus, plastid	51.46	40.0
Zm00001d014756_P006	Maize	nucleus, plastid	54.64	39.54
Bra023606.1-P	Field mustard	plastid	43.77	39.38
Bra015671.1-P	Field mustard	plastid	40.05	39.12
Bra032202.1-P	Field mustard	plastid	41.64	37.2
Bra022173.1-P	Field mustard	nucleus, plastid	35.01	35.01
Bra017726.1-P	Field mustard	nucleus	30.5	28.33
Bra016460.1-P	Field mustard	nucleus	30.5	28.05
Bra003727.1-P	Field mustard	nucleus	27.85	27.42
Bra025831.1-P	Field mustard	nucleus	29.71	27.32
Bra002046.1-P	Field mustard	nucleus	28.38	27.23
Bra024504.1-P	Field mustard	nucleus	30.24	27.21
Bra037265.1-P	Field mustard	nucleus	29.18	26.89
Bra015762.1-P	Field mustard	nucleus	30.5	26.68
Bra005880.1-P	Field mustard	nucleus, plastid	28.38	25.85
Bra028741.1-P	Field mustard	nucleus	28.38	25.78
Bra011769.1-P	Field mustard	nucleus	28.91	25.47
Bra026065.1-P	Field mustard	nucleus	27.32	20.36
Bra036544.1-P	Field mustard	nucleus	52.79	20.16
Bra016640.1-P	Field mustard	nucleus	29.18	16.79

Protein Annotations

EnsemblPlants:Bra000822.1	EnsemblPlants:Bra000822.1-P	EnsemblPlantsGene:Bra000822	Gene3D:1.10.472.10	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N
PANTHER:PTHR10177	PANTHER:PTHR10177:SF346	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	SMART:SM00385
SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI0002540520	UniProt:M4C9E3	MapMan:13.1.1.1.1	:

Description

AT1G80370 (E=8e-140) CYCA2;4 | CYCA2;4 (Cyclin A2;4); cyclin-dependent protein kinase regulator

Coordinates

chrA03:+:13352554..13354269

Molecular Weight (calculated)

43353.5 Da

IEP (calculated)

8.282

GRAVY (calculated)

-0.214

Length

377 amino acids

Sequence
(BLAST)

001: MKKENDVSGS TIPLHARPLT RAYSKMITSS EVDATTQSLG HVARANTKRA ALDEKKASAP KKRAVLKDIT NEISPKLETV KQIEKVGAVS TVAKILKVID
101: IDSDEKDPLL CSLYAPEIYH NLRVAELQRR PFPDYMERIQ RDLTWTMRGI LVDWLVEVSE EYKLVPDTLY LTMYLIDWFL HGNYIERQRL QLLGVTCMFI
201: ASKYEEIFAP RIEEFCFITD NTYTKDQVLE MESQVLKHFG FQIYTPTSKT FLRRFLRAAH ASDLQKPSVE MEFLANYLIE LTLIDYEFLK FLPSVIAASA
301: VFLAKWTLNQ SSHPWNPTLE HYTTFKASDL KASVHALQDL QLNTKGCTLT SIRLKYKQEK LKSVAVLSSP ELPDRLF

Best Arabidopsis Sequence Match ( AT5G25380.1 )
(BLAST)

001: MHRASSKHTN AKKEAISTSK IRDNNVRVTR SRAKALGVSN SPSKPAFKHE TKRVARPSNK RMASDNITVC NQKRRAVLKD VTNTLAESII STEGNVKACK
101: RGGKETKQIE EDGLVDVDGE KSKLAEDLSK IRMVESLDAS ASKQKEDRSD VTDCVQIVDI DSGVQDPQFC SLYAASIYDS INVAELEQRP STSYMVQVQR
201: DIDPTMRGIL IDWLVEVSEE YKLVSDTLYL TVNLIDRFMS HNYIEKQKLQ LLGITCMLIA SKYEEISAPR LEEFCFITDN TYTRLEVLSM EIKVLNSLHF
301: RLSVPTTKTF LRRFIRAAQA SDKVPLIEME YLANYFAELT LTEYTFLRFL PSLIAASAVF LARWTLDQSN HPWNQTLQHY TRYETSALKN TVLAMEELQL
401: NTSGSTLIAI HTKYNQQKFK RVATLTSPER VNTLFSR

Arabidopsis Description

CYCA2-1Cyclin-A2-1 [Source:UniProtKB/Swiss-Prot;Acc:Q39071]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.