Factsheet for Bra016640.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003493.1-P
Bra026481.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G16330.1	Bra003493.1-P	AT3G62240.1	20706207
AT1G16330.1	Bra026481.1-P	AT5G23810.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96819	Canola	nucleus	95.57	97.05
CDX83953	Canola	nucleus	91.45	91.45
Bra026065.1-P	Field mustard	nucleus	66.11	85.57
AT1G16330.1	Thale cress	nucleus	77.71	78.55
VIT_19s0085g00690.t01	Wine grape	nucleus	41.98	45.53
KRH44849	Soybean	nucleus	41.83	36.98
Bra017726.1-P	Field mustard	nucleus	22.14	35.71
Bra016460.1-P	Field mustard	nucleus	22.14	35.37
Bra025831.1-P	Field mustard	nucleus	21.98	35.12
Bra037265.1-P	Field mustard	nucleus	21.68	34.72
Bra002046.1-P	Field mustard	nucleus	20.61	34.35
Bra024504.1-P	Field mustard	nucleus	21.68	33.89
Bra028741.1-P	Field mustard	nucleus	21.37	33.73
Bra003727.1-P	Field mustard	nucleus	19.69	33.68
Bra005880.1-P	Field mustard	nucleus, plastid	20.92	33.09
Solyc07g066660.2.1	Tomato	nucleus	36.79	32.61
Bra015762.1-P	Field mustard	nucleus	21.37	32.48
Bra011769.1-P	Field mustard	nucleus	21.22	32.48
Bra040753.1-P	Field mustard	nucleus, plastid	16.18	29.2
Bra000822.1-P	Field mustard	nucleus	16.79	29.18
Bra032220.1-P	Field mustard	nucleus	15.88	29.13
Bra033658.1-P	Field mustard	nucleus	15.42	28.37
Bra040793.1-P	Field mustard	nucleus	15.42	27.82
Bra031463.1-P	Field mustard	nucleus	15.42	27.37
Bra026756.1-P	Field mustard	plastid	16.34	26.16
Bra040710.1-P	Field mustard	nucleus	14.81	26.15
Bra040792.1-P	Field mustard	nucleus, plastid	14.5	26.1
Bra008973.1-P	Field mustard	nucleus, plastid	17.1	25.63
Bra003563.1-P	Field mustard	plastid	16.79	25.46
Bra015671.1-P	Field mustard	plastid	14.96	25.39
Bra016654.1-P	Field mustard	nucleus, plastid	17.1	25.17
Bra008477.1-P	Field mustard	plastid	17.4	24.95
Bra022173.1-P	Field mustard	nucleus, plastid	14.2	24.67
Bra032202.1-P	Field mustard	plastid	15.57	24.17
Bra023606.1-P	Field mustard	plastid	15.27	23.87
Bra026120.1-P	Field mustard	nucleus	16.79	23.61
Bra035186.1-P	Field mustard	plastid	16.64	23.59
Bra036544.1-P	Field mustard	nucleus	15.88	10.54

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.2	EnsemblPlantsGene:Bra016640	EnsemblPlants:Bra016640.1	EnsemblPlants:Bra016640.1-P	InterPro:Cyclin-like
InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	UniProt:M4DJG2	PFAM:PF00134	PFAM:PF02984	ScanProsite:PS00292	PANTHER:PTHR10177
PANTHER:PTHR10177:SF222	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI0002545895	SEG:seg

Description

AT1G16330 (E=1e-176) CYCB3;1 | CYCB3;1 (cyclin b3;1); cyclin-dependent protein kinase

Coordinates

chrA08:+:19388175..19392920

Molecular Weight (calculated)

73274.1 Da

IEP (calculated)

10.541

GRAVY (calculated)

-0.551

Length

655 amino acids

Sequence
(BLAST)

001: MAFAKAPRLS KDDIFGNRAA VTRSFKFYSD NQKTDPACKV AVANKTRVPL RKKTVTVSSG ATSNTNKTKK GNSGITGQDK SSNENFEENT KVTRKVLADL
101: SNLAGNTLRP TLSGNNTVKW KGVKCSNPQR ISVGTTRSND TSLKKPTKVN ESKRVTEVGN NGINKTDHKI IKNRTLSFGS TAGGTRKSLP VFKRTSLTDK
201: TTKKVVVNIL MILENVSSLD SKQSGQGPAS KVGNRALPQL SSTRSCTGRT RTSVGSIPSD LNNQSKNNVR IRRKSIKIQT TLKTSLQNRS PLKKPPVGRS
301: KSGSISSIPS TEEAASSSSI PEEAERKGLK EDTQEGSSAN EKTDPVTKVL DVTARPKSKR RKSFTSLLVT GSKFDGKNDE PEQQEKLPSI DDESNQLEVA
401: EYVDDIYQFY WTSEALNPAL GYYLSTQTKV SPVTRGILIN WLIEVHFKFH LMHETLYLTM NLLDRYLSQV AVQKNEMQLI GLTALLLASK YEDYWHPRIK
501: DLISISAESY TRQQILGMER IMLKQLQFRL NEATPYVFML RFLKAARSNK KLEQLAFYLI ELCLVEYEAL KFKPSLLCAS AIYVARCTLR MTPVWTPLLN
601: NHTHYNVSQM KDCSDMILRF HKAAKTGKLR VTYDKYMSPD RSNIALLKPL DKLPL

Best Arabidopsis Sequence Match ( AT1G16330.1 )
(BLAST)

001: MAFAKAPRLS RDDILGNRVS TRSFKIFSDN QKTDPASTIG TSQKKTRIPL RRKSVTISNG LGATSNTNNM KKENSRITGK GKSSIENWEE YTKVTRKALA
101: DLSNLGGNTL RIPTLCGSST MKWKGVKMAN PKRVSVGPTR ANNISVKKST KENVSKRTTE LGNNNLYKTG QKFIKNKTLS LGSTAGGTRK SLPTLKRTSL
201: TDKSLKKFNV SGLNSKQLGQ GLASKASNQA VPQLSSAGTY TWKTRTSVGS IQSDGNKQSK NNVRFVRKSI KIQTTVKTSL QNRSSLKKPP VGRSKSRSIS
301: SIPSSAVAST LSLPEKVETK CLEEDTQGES SSSGNKDPTT KVLDVTAKPK SKRRKSFTSL LVNGSKFDEK NGETTEPEKL PSIDDESNQL EVAEYVDDIY
401: QFYWTAEALN PALGHYLSAH AEVSPVTRGI LINWLIEVHF KFDLMHETLY LTMDLLDRYL SQVPIHKNEM QLIGLTALLL ASKYEDYWHP RIKDLISISA
501: ESYTREQILG MERSMLKQLK FRLNAPTPYV FMLRFLKAAQ SNKKLEQLAF YLIELCLVEY EALKYKPSLL CASAIYVARC TLHMTPVWTS LLNNHTHYNV
601: SQMKDCSDMI LRFHKAAKTG NLRVTYEKYI NPDRSNVAVL KPLDKLPL

Arabidopsis Description

CYCB3;1CYCB3 [Source:UniProtKB/TrEMBL;Acc:A0A178W969]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.