Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc01g068390.2.1 | |
| Solyc07g066020.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G16330.1 | Solyc01g068390.2.1 | AT3G62240.1 | 20706207 |
| AT1G16330.1 | Solyc07g066020.2.1 | AT5G23810.1 | 20706207 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_19s0085g00690.t01 | Wine grape | nucleus | 40.19 | 49.17 |
| Bra026065.1-P | Field mustard | nucleus | 30.31 | 44.27 |
| CDY33338 | Canola | nucleus | 30.72 | 38.87 |
| AT1G16330.1 | Thale cress | nucleus | 33.29 | 37.96 |
| CDY35083 | Canola | cytosol, endoplasmic reticulum, nucleus | 31.26 | 37.93 |
| CDX96819 | Canola | nucleus | 32.88 | 37.67 |
| KRH44849 | Soybean | nucleus | 37.48 | 37.38 |
| Bra016640.1-P | Field mustard | nucleus | 32.61 | 36.79 |
| CDX83953 | Canola | nucleus | 32.48 | 36.64 |
| Solyc02g061650.1.1 | Tomato | nucleus | 17.19 | 36.18 |
| Solyc04g082430.2.1 | Tomato | nucleus | 18.4 | 34.61 |
| Solyc12g094600.1.1 | Tomato | nucleus | 19.49 | 33.88 |
| Solyc06g073610.2.1 | Tomato | nucleus | 19.49 | 32.73 |
| Solyc01g009040.2.1 | Tomato | nucleus | 19.08 | 32.41 |
| Solyc10g078330.1.1 | Tomato | nucleus | 18.54 | 32.39 |
| Solyc03g032190.2.1 | Tomato | nucleus | 18.81 | 32.25 |
| Solyc02g082820.2.1 | Tomato | nucleus | 18.81 | 32.03 |
| Solyc10g080950.1.1 | Tomato | nucleus | 19.62 | 31.39 |
| Solyc10g049360.1.1 | Tomato | nucleus | 13.26 | 25.93 |
| Solyc04g078310.2.1 | Tomato | nucleus | 12.58 | 25.07 |
| Solyc12g088470.1.1 | Tomato | nucleus | 12.18 | 25.0 |
| Solyc12g088500.1.1 | Tomato | nucleus | 11.5 | 24.01 |
| Solyc12g088530.1.1 | Tomato | nucleus | 11.5 | 24.01 |
| Solyc12g088520.1.1 | Tomato | nucleus | 11.5 | 23.94 |
| Solyc11g005090.1.1 | Tomato | plastid | 15.43 | 23.27 |
| Solyc06g065680.2.1 | Tomato | nucleus, plastid | 14.21 | 22.11 |
| Solyc03g120440.1.1 | Tomato | nucleus, plastid | 13.53 | 21.83 |
Protein Annotations
| EnsemblPlants:Solyc07g066660.2.1 | EnsemblPlantsGene:Solyc07g066660.2 | Gene3D:1.10.472.10 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF222 | PFAM:PF00134 | PFAM:PF02984 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 |
| UniParc:UPI000276B67F | UniProt:K4CHY9 | MapMan:13.1.1.1.2 | : | : | : |
Description
No Description!
Coordinates
chr7:+:68022454..68035612
Molecular Weight (calculated)
83475.2 Da
IEP (calculated)
10.433
GRAVY (calculated)
-0.474
Length
739 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKLNSQKHK SIQNGGIREL KIYEEADKIK YQSRDSLSSR CKGKSGVLSM IDVQTSQKNL KSDIKNEEKT KEKCSTSVKI FVKRKVLTDI SNIRGNSLRT
101: KSYNSSKLVD SNDKWSRITN NSSRNFIMGN VRTNMNGATG DEEILTRAPF KDTKASFEGP KTKIQGRKSV TIGIRSTRRN ALPPSRRSLL TLQQVNVDDT
201: NYKEKGNLRR NLSGATGDRQ ILTQAPFKAV KAPFDGPKTK TQGSKSATIG ISLILSVWLL RTTGRNALPP SRRSLPVLEQ VNTKGTHNKA KENPKELEKG
301: KGINGVPVLA KLKAAGDVLP QLSNHNNIRR NRVSDASARM APKGHTKAEI GALRKKSVKT VLKISARGLN SQPFSKSSSM SNVHKCTSRV AIPYKRLEDV
401: STSSLSKYAT SDISAEQPHQ KEVVSSSNGS LDTPECSIAR RKSYRRKSFT CLLMARSKFL KEQCGSVKLE NLSNIYDNCN HLEVTEYVDD IYLYYWVIEA
501: QNQPIKNYME IQKEITPQMR GILINWLIEV HLKFDLMQEA LFLMVTLLDY YLSLVRVKKN DLQLVGLTSL FLASKYEDLW HPRIIDLLSI SGESYTRDQM
601: LDMEKDILRK LKFRLNAATP YVFMLRLLKA AQADTRFEHL AFYLIELCLV EYEALNYKPS MLCASAIYVA RCTMQVMPAW TPLLGMHARY QESQLRQCAE
701: MILRFHKSAT TALLKVTHEK YMCSSNGKVA SIRPLESLP
101: KSYNSSKLVD SNDKWSRITN NSSRNFIMGN VRTNMNGATG DEEILTRAPF KDTKASFEGP KTKIQGRKSV TIGIRSTRRN ALPPSRRSLL TLQQVNVDDT
201: NYKEKGNLRR NLSGATGDRQ ILTQAPFKAV KAPFDGPKTK TQGSKSATIG ISLILSVWLL RTTGRNALPP SRRSLPVLEQ VNTKGTHNKA KENPKELEKG
301: KGINGVPVLA KLKAAGDVLP QLSNHNNIRR NRVSDASARM APKGHTKAEI GALRKKSVKT VLKISARGLN SQPFSKSSSM SNVHKCTSRV AIPYKRLEDV
401: STSSLSKYAT SDISAEQPHQ KEVVSSSNGS LDTPECSIAR RKSYRRKSFT CLLMARSKFL KEQCGSVKLE NLSNIYDNCN HLEVTEYVDD IYLYYWVIEA
501: QNQPIKNYME IQKEITPQMR GILINWLIEV HLKFDLMQEA LFLMVTLLDY YLSLVRVKKN DLQLVGLTSL FLASKYEDLW HPRIIDLLSI SGESYTRDQM
601: LDMEKDILRK LKFRLNAATP YVFMLRLLKA AQADTRFEHL AFYLIELCLV EYEALNYKPS MLCASAIYVA RCTMQVMPAW TPLLGMHARY QESQLRQCAE
701: MILRFHKSAT TALLKVTHEK YMCSSNGKVA SIRPLESLP
001: MAFAKAPRLS RDDILGNRVS TRSFKIFSDN QKTDPASTIG TSQKKTRIPL RRKSVTISNG LGATSNTNNM KKENSRITGK GKSSIENWEE YTKVTRKALA
101: DLSNLGGNTL RIPTLCGSST MKWKGVKMAN PKRVSVGPTR ANNISVKKST KENVSKRTTE LGNNNLYKTG QKFIKNKTLS LGSTAGGTRK SLPTLKRTSL
201: TDKSLKKFNV SGLNSKQLGQ GLASKASNQA VPQLSSAGTY TWKTRTSVGS IQSDGNKQSK NNVRFVRKSI KIQTTVKTSL QNRSSLKKPP VGRSKSRSIS
301: SIPSSAVAST LSLPEKVETK CLEEDTQGES SSSGNKDPTT KVLDVTAKPK SKRRKSFTSL LVNGSKFDEK NGETTEPEKL PSIDDESNQL EVAEYVDDIY
401: QFYWTAEALN PALGHYLSAH AEVSPVTRGI LINWLIEVHF KFDLMHETLY LTMDLLDRYL SQVPIHKNEM QLIGLTALLL ASKYEDYWHP RIKDLISISA
501: ESYTREQILG MERSMLKQLK FRLNAPTPYV FMLRFLKAAQ SNKKLEQLAF YLIELCLVEY EALKYKPSLL CASAIYVARC TLHMTPVWTS LLNNHTHYNV
601: SQMKDCSDMI LRFHKAAKTG NLRVTYEKYI NPDRSNVAVL KPLDKLPL
101: DLSNLGGNTL RIPTLCGSST MKWKGVKMAN PKRVSVGPTR ANNISVKKST KENVSKRTTE LGNNNLYKTG QKFIKNKTLS LGSTAGGTRK SLPTLKRTSL
201: TDKSLKKFNV SGLNSKQLGQ GLASKASNQA VPQLSSAGTY TWKTRTSVGS IQSDGNKQSK NNVRFVRKSI KIQTTVKTSL QNRSSLKKPP VGRSKSRSIS
301: SIPSSAVAST LSLPEKVETK CLEEDTQGES SSSGNKDPTT KVLDVTAKPK SKRRKSFTSL LVNGSKFDEK NGETTEPEKL PSIDDESNQL EVAEYVDDIY
401: QFYWTAEALN PALGHYLSAH AEVSPVTRGI LINWLIEVHF KFDLMHETLY LTMDLLDRYL SQVPIHKNEM QLIGLTALLL ASKYEDYWHP RIKDLISISA
501: ESYTREQILG MERSMLKQLK FRLNAPTPYV FMLRFLKAAQ SNKKLEQLAF YLIELCLVEY EALKYKPSLL CASAIYVARC TLHMTPVWTS LLNNHTHYNV
601: SQMKDCSDMI LRFHKAAKTG NLRVTYEKYI NPDRSNVAVL KPLDKLPL
Arabidopsis Description
CYCB3;1CYCB3 [Source:UniProtKB/TrEMBL;Acc:A0A178W969]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.