Factsheet for Solyc12g088520.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g007740.2.1
Solyc01g081640.2.1
Solyc01g089970.2.1
Solyc01g097050.2.1
Solyc01g103050.2.1
Solyc01g111080.2.1
Solyc01g111170.2.1
Solyc02g063070.2.1
Solyc02g067460.2.1
Solyc02g081170.2.1
Solyc02g093900.2.1
Solyc03g031460.1.1
Solyc03g034180.2.1
Solyc03g058920.2.1
Solyc03g082600.2.1
Solyc03g110910.2.1
Solyc04g073990.2.1
Solyc04g074230.2.1
Solyc04g081580.2.1
Solyc05g053650.2.1
Solyc05g055730.2.1
Solyc06g066060.2.1
Solyc07g052350.2.1
Solyc07g056490.2.1
Solyc08g022210.2.1
Solyc08g061000.2.1
Solyc08g066330.1.1
Solyc09g055420.1.1
Solyc09g091750.2.1
Solyc09g091780.2.1	nucleus
Solyc10g054910.1.1
Solyc10g082030.1.1
Solyc11g008870.1.1
Solyc12g005860.1.1
Solyc12g011310.1.1
Solyc12g098310.1.1	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G47220.1	Solyc05g053650.2.1	AT1G04810.1	20706207
AT1G47220.1	Solyc09g091750.2.1	AT1G04810.1	20706207
AT1G47220.1	Solyc04g074230.2.1	AT1G22300.1	20706207
AT1G47220.1	Solyc04g073990.2.1	AT1G35720.1	20706207
AT1G47220.1	Solyc01g103050.2.1	AT1G59750.1	20706207
AT1G47220.1	Solyc01g111080.2.1	AT1G75750.1	20706207
AT1G47220.1	Solyc07g056490.2.1	AT1G78380.1	20706207
AT1G47220.1	Solyc12g011310.1.1	AT1G78380.1	20706207
AT1G47220.1	Solyc07g052350.2.1	AT2G05710.1	20706207
AT1G47220.1	Solyc12g005860.1.1	AT2G05710.1	20706207
AT1G47220.1	Solyc05g055730.2.1	AT2G44160.1	20706207
AT1G47220.1	Solyc11g008870.1.1	AT2G44160.1	20706207
AT1G47220.1	Solyc02g067460.2.1	AT3G01280.1	20706207
AT1G47220.1	Solyc03g058920.2.1	AT3G01280.1	20706207
AT1G47220.1	Solyc01g007740.2.1	AT3G11630.1	20706207
AT1G47220.1	Solyc10g082030.1.1	AT3G11630.1	20706207
AT1G47220.1	Solyc02g093900.2.1	AT3G27240.1	20706207
AT1G47220.1	Solyc08g066330.1.1	AT3G48750.1	20706207
AT1G47220.1	Solyc01g089970.2.1	AT4G09320.1	20706207
AT1G47220.1	Solyc09g055420.1.1	AT4G09320.1	20706207
AT1G47220.1	Solyc01g111170.2.1	AT4G38740.1	20706207
AT1G47220.1	Solyc10g054910.1.1	AT4G38740.1	20706207
AT1G47220.1	Solyc06g066060.2.1	AT5G11170.1	20706207
AT1G47220.1	Solyc08g061000.2.1	AT5G11170.1	20706207
AT1G47220.1	Solyc02g063070.2.1	AT5G38480.1	20706207
AT1G47220.1	Solyc03g034180.2.1	AT5G38480.1	20706207
AT1G47220.1	Solyc03g082600.2.1	AT5G53560.1	20706207
AT5G43080.1	Solyc03g031460.1.1	AT1G55890.1	20706207
AT5G43080.1	Solyc08g022210.2.1	AT2G05830.1	20706207
AT5G43080.1	Solyc01g081640.2.1	AT2G31920.1	20706207
AT5G43080.1	Solyc09g091780.2.1	AT2G32710.1	20018602
AT5G43080.1	Solyc12g098310.1.1	AT2G32710.1	20018602
AT5G43080.1	Solyc01g097050.2.1	AT3G04620.1	20706207
AT5G43080.1	Solyc08g066330.1.1	AT3G48750.1	20706207
AT5G43080.1	Solyc02g081170.2.1	AT4G04020.1	20706207
AT5G43080.1	Solyc04g081580.2.1	AT4G16630.1	20706207
AT5G43080.1	Solyc03g110910.2.1	AT5G50320.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g088500.1.1	Tomato	nucleus	87.04	87.29
Solyc12g088470.1.1	Tomato	nucleus	87.89	86.67
Solyc12g088530.1.1	Tomato	nucleus	81.69	81.92
Solyc04g078310.2.1	Tomato	nucleus	72.39	69.27
VIT_18s0001g09580.t01	Wine grape	nucleus, plastid	68.45	66.58
KRH52056	Soybean	nucleus	36.34	61.14
OQU91386	Sorghum	nucleus	44.23	60.15
CDY06752	Canola	nucleus	47.89	59.65
GSMUA_Achr10P...	Banana	nucleus	51.27	57.41
CDY22369	Canola	nucleus	56.34	56.98
KRH15427	Soybean	nucleus, plastid	57.46	56.04
Bra033658.1-P	Field mustard	nucleus	56.06	55.9
KRH05614	Soybean	nucleus	56.62	54.77
CDY17091	Canola	nucleus	55.21	54.75
AT5G43080.1	Thale cress	nucleus	54.37	54.37
TraesCS4D01G076900.1	Wheat	nucleus	56.62	54.32
CDY66770	Canola	nucleus	55.21	54.14
TraesCS4B01G078300.1	Wheat	nucleus	56.06	53.64
HORVU4Hr1G013320.1	Barley	nucleus	56.34	53.62
CDY06757	Canola	nucleus, plastid	54.65	53.44
Bra040753.1-P	Field mustard	nucleus, plastid	54.65	53.44
TraesCS4A01G236700.2	Wheat	plastid	56.06	53.07
CDY47596	Canola	nucleus	54.08	52.89
GSMUA_Achr2P21530_001	Banana	cytosol, nucleus, plastid	42.54	52.8
CDY17037	Canola	nucleus, plastid	54.08	52.75
AT1G47230.2	Thale cress	nucleus, plastid	54.93	52.7
Bra040793.1-P	Field mustard	nucleus	53.8	52.62
AT1G47210.2	Thale cress	nucleus	54.93	52.42
CDY17039	Canola	nucleus	53.52	52.34
Bra040710.1-P	Field mustard	nucleus	54.65	52.29
Bra040792.1-P	Field mustard	nucleus, plastid	53.52	52.2
KRH61375	Soybean	nucleus	47.89	51.99
Bra032220.1-P	Field mustard	nucleus	52.11	51.82
CDY47595	Canola	nucleus, plastid	54.08	51.75
CDY23653	Canola	nucleus	51.83	51.54
KRH61369	Soybean	nucleus	47.32	51.38
GSMUA_Achr6P11130_001	Banana	nucleus	56.34	51.15
KRH61371	Soybean	nucleus	50.14	51.0
KRH52055	Soybean	nucleus	50.99	50.56
Zm00001d033365_P002	Maize	nucleus	52.11	49.73
Solyc10g049360.1.1	Tomato	nucleus	52.68	49.47
Zm00001d013744_P001	Maize	nucleus	49.58	49.3
Os12t0581800-01	Rice	nucleus, plastid	53.24	49.09
KRH61373	Soybean	nucleus, plastid	51.55	48.8
TraesCS5B01G078200.1	Wheat	plastid	51.55	48.54
GSMUA_Achr2P21520_001	Banana	nucleus	49.01	48.33
AT1G47220.1	Thale cress	nucleus	44.51	48.32
TraesCS5D01G084700.1	Wheat	nucleus	51.27	48.15
TraesCS5A01G072000.1	Wheat	plastid	50.99	48.14
Zm00001d030849_P001	Maize	nucleus	54.93	46.1
EES16237	Sorghum	nucleus, plastid	55.49	46.03
TraesCS4D01G253200.1	Wheat	nucleus	31.27	45.49
Zm00001d041334_P001	Maize	nucleus, plastid	52.39	42.56
TraesCS4B01G254000.1	Wheat	nucleus	44.51	42.02
TraesCS4D01G253900.1	Wheat	nucleus	43.66	40.79
TraesCS4A01G050700.1	Wheat	nucleus	43.1	40.26
HORVU5Hr1G018820.2	Barley	nucleus, plastid	51.27	40.09
EER95303	Sorghum	nucleus, plastid	41.97	39.11
TraesCS4A01G051300.1	Wheat	nucleus	36.9	38.19
TraesCS4B01G253100.1	Wheat	nucleus	36.62	38.12
HORVU4Hr1G069310.3	Barley	nucleus	42.82	36.63
Solyc06g065680.2.1	Tomato	nucleus, plastid	43.94	32.84
Solyc03g120440.1.1	Tomato	nucleus, plastid	41.69	32.31
Solyc11g005090.1.1	Tomato	plastid	44.23	32.04
Zm00001d048127_P001	Maize	plastid	39.44	29.23
Os03t0208700-00	Rice	nucleus	33.52	29.1
Os03t0607600-00	Rice	nucleus	49.58	28.95
Solyc02g061650.1.1	Tomato	nucleus	27.89	28.21
Solyc04g082430.2.1	Tomato	nucleus	28.17	25.45
Solyc03g032190.2.1	Tomato	nucleus	30.14	24.83
Solyc02g082820.2.1	Tomato	nucleus	29.86	24.42
Solyc12g094600.1.1	Tomato	nucleus	28.73	24.0
Solyc01g009040.2.1	Tomato	nucleus	28.17	22.99
Solyc06g073610.2.1	Tomato	nucleus	28.45	22.95
Solyc10g078330.1.1	Tomato	nucleus	27.32	22.93
Solyc10g080950.1.1	Tomato	nucleus	26.76	20.56
Os03t0208800-00	Rice	nucleus	18.03	16.12
Solyc07g066660.2.1	Tomato	nucleus	23.94	11.5

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.1	InterPro:Cyclin-A_plant	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom
InterPro:Cyclin_N	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	UniProt:K4DGS3
PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF270
SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	EnsemblPlantsGene:Solyc12g088520.1	EnsemblPlants:Solyc12g088520.1.1	UniParc:UPI000276AB5C

Description

No Description!

Coordinates

chr12:+:63848615..63850240

Molecular Weight (calculated)

40862.5 Da

IEP (calculated)

7.307

GRAVY (calculated)

-0.269

Length

355 amino acids

Sequence
(BLAST)

001: MADQENAVRV TRLAKKRAAE AMVQQLQQPN KKRVVLSEIQ DLCNVGINQI EDKVFVSEPL RPKCKQIIKR ELKTSDDDPQ MCTAYASDIY DYLHQMEIEK
101: KRRPLPDYLE KVQKDVSTNM RGVLVDWLVE VTDEYKLLSD TLYLAVSYID RFLSVNVIPR KKLQLLGVTS MLIAAKYEEI KPPSAEDFAY ITDNTFTTKD
201: VINMEASVLQ SLKFEMGNPT TKTFLGRFTR IAQEGYENPD LQLEFLGYYL AELSLLDYNC VKFLPSLVAA AVIFLSRFTL QPKSHPWSLA LQCCSGYRPV
301: DLKECVLIIH DLQLSRRRSN LSAVRDKYKL HKFKCVSTLS SPLEIPDSFF EDTRE

Best Arabidopsis Sequence Match ( AT5G43080.1 )
(BLAST)

001: MADEKENCVR MTRAATKRKA SMEAAIDKER INKKRVVLGE LPNLSNIKKS RKATTKQKKK SVSIPTIETL NSDIDTRSDD PQMCGPYVTS IFEYLRQLEV
101: KSRPLVDYIE KIQKDVTSNM RGVLVDWLVE VAEEYKLLSD TLYLAVSYID RFLSLKTVNK QRLQLLGVTS MLIASKYEEI TPPNVDDFCY ITDNTYTKQE
201: IVKMEADILL ALQFELGNPT SNTFLRRFTR VAQEDFEMSH LQMEFLCSYL SELSMLDYQS VKFLPSTVAA SAVFLARFII RPKQHPWNVM LEEYTRYKAG
301: DLKECVAMIH DLYLSRKCGA LEAIREKYKQ HKFKCVATMP VSPELPLTVF EDVNI

Arabidopsis Description

CYCA3-1Putative cyclin-A3-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMH5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.