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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular, nucleus

Predictor Summary:
  • extracellular 2
  • endoplasmic reticulum 2
  • vacuole 2
  • plasma membrane 2
  • golgi 2
  • plastid 2
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, nucleus
Any Predictor:cytosol, mitochondrion, plastid, secretory
BaCelLo:secretory
EpiLoc:plastid
iPSORT:secretory
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:plastid
extracellular: 22364583
nucleus: 25464976
plastid: 26371478
unclear: 26455813
nucleus: 28394025
endoplasmic reticulum: 29145071
extracellular: 29876421
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID: 26371478 doi
M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID: 29145071 doi
P Ibort, H Imai, M Uemura, R Aroca
Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
msms PMID: 22364583 doi
P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez
Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.
msms PMID: 25464976 doi
Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400004125 Potato extracellular 96.49 96.49
Solyc10g054910.1.1 Tomato extracellular, unclear 92.4 91.86
KRH24153 Soybean endoplasmic reticulum, mitochondrion, nucleus 87.13 86.63
KRH60719 Soybean cytosol, endoplasmic reticulum, mitochondrion 86.55 86.05
KRH29120 Soybean endoplasmic reticulum, nucleus 85.96 85.47
KRH51416 Soybean cytosol 85.38 84.88
VIT_03s0038g01930.t01 Wine grape cytosol 83.63 83.14
VIT_18s0001g14400.t01 Wine grape extracellular 83.04 82.56
GSMUA_Achr3P12630_001 Banana plasma membrane, unclear 71.93 81.46
CDY12100 Canola cytosol 81.87 81.4
CDX90292 Canola cytosol 81.87 81.4
Bra010728.1-P Field mustard cytosol 81.87 81.4
Zm00001d050635_P001 Maize plastid 81.29 81.29
CDY22414 Canola cytosol, extracellular 81.29 80.81
CDX72741 Canola cytosol 81.29 80.81
Bra033574.1-P Field mustard cytosol 81.29 80.81
TraesCS6D01G066700.1 Wheat golgi, plastid 80.7 80.7
TraesCS6B01G093100.2 Wheat cytosol 80.7 80.7
TraesCS6A01G068900.1 Wheat cytosol 80.7 80.7
AT4G38740.1 Thale cress cytosol 80.7 80.23
EES05164 Sorghum cytosol 80.7 80.23
EES04388 Sorghum cytosol 80.12 80.12
Zm00001d016661_P001 Maize plastid 80.12 79.65
Zm00001d016660_P001 Maize cytosol 80.12 79.65
AT2G21130.1 Thale cress cytosol 80.12 78.74
Os02t0121300-01 Rice extracellular 78.36 77.91
TraesCS6A01G405900.1 Wheat cytosol 73.68 75.45
Solyc11g006070.1.1 Tomato cytosol, extracellular, unclear 63.74 71.24
HORVU6Hr1G012570.2 Barley cytosol 80.7 66.99
HORVU6Hr1G092950.1 Barley endoplasmic reticulum, golgi 73.1 66.14
Solyc06g076970.2.1 Tomato nucleus 69.01 57.0
TraesCS6B01G450300.1 Wheat cytosol 71.93 56.16
Solyc01g096520.2.1 Tomato cytosol, nucleus, plastid 61.4 55.26
TraesCS6B01G450400.1 Wheat cytosol 68.42 53.42
TraesCS6A01G405800.1 Wheat cytosol 76.02 52.63
Solyc06g051650.2.1 Tomato endoplasmic reticulum 67.84 51.56
Solyc01g009990.2.1 Tomato plastid 64.33 44.35
Solyc01g111360.2.1 Tomato endoplasmic reticulum 53.22 39.91
Solyc01g108340.2.1 Tomato cytosol 59.65 28.18
Solyc02g090480.2.1 Tomato cytosol 57.31 27.15
Solyc09g065720.2.1 Tomato nucleus 66.08 17.12
Solyc08g067090.2.1 Tomato nucleus 48.54 10.26
Protein Annotations
MapMan:18.12.1Gene3D:2.40.100.10InterPro:Cyclophilin-like_dom_sfInterPro:Cyclophilin-type_PPIaseInterPro:Cyclophilin-type_PPIase_CSInterPro:Cyclophilin-type_PPIase_dom
GO:GO:0000413GO:GO:0003674GO:GO:0003755GO:GO:0003824GO:GO:0005488GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0006457GO:GO:0006464GO:GO:0008150
GO:GO:0008152GO:GO:0009987GO:GO:0016018GO:GO:0016853GO:GO:0019538InterPro:IPR002130
InterPro:IPR029000EMBL:M55019UniProt:P21568PFAM:PF00160PIRSF:PIRSF001467PRINTS:PR00153
ScanProsite:PS00170PFscan:PS50072PANTHER:PTHR11071PANTHER:PTHR11071:SF382SUPFAM:SSF50891EnsemblPlantsGene:Solyc01g111170.2
EnsemblPlants:Solyc01g111170.2.1UniParc:UPI0000128C8FSEG:seg:::
Description
CYPPeptidyl-prolyl cis-trans isomerase [Source:UniProtKB/Swiss-Prot;Acc:P21568]
Coordinates
chr1:+:97523336..97524346
Molecular Weight (calculated)
17911.6 Da
IEP (calculated)
8.757
GRAVY (calculated)
-0.109
Length
171 amino acids
Sequence
(BLAST)
001: MANPKVFFDL TIGGAPAGRV VMELFADTTP KTAENFRALC TGEKGVGKMG KPLHYKGSTF HRVIPGFMCQ GGDFTAGNGT GGESIYGAKF NDENFVKKHT
101: GPGILSMANA GPGTNGSQFF ICTAKTEWLN GKHVVFGQVV EGMDVIKKAE AVGSSSGRCS KPVVIADCGQ L
Best Arabidopsis Sequence Match ( AT2G16600.1 )
(BLAST)
001: MATNPKVYFD MTVGGKSAGR IVMELYADTT PETAENFRAL CTGERGIGKQ GKPLHYKGSS FHRVIPKFMC QGGDFTAGNG TGGESIYGSK FKDENFIKKH
101: TGPGILSMAN AGANTNGSQF FICTEKTSWL DGKHVVFGQV VEGLNVVRDI EKVGSDSGRT SKPVVIADCG QIS
Arabidopsis Description
CYP19-1Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178VVJ7]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.