Subcellular Localization
min:
: max
Winner_takes_all: extracellular, nucleus
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- plastid 2
- cytosol 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
22364583
nucleus: 25464976 plastid: 26371478 unclear: 26455813 nucleus: 28394025 endoplasmic reticulum: 29145071 extracellular: 29876421 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID:
26371478
doi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID:
29145071
doi
Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.
msms PMID:
26455813
doi
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400004125 | Potato | extracellular | 96.49 | 96.49 |
Solyc10g054910.1.1 | Tomato | extracellular, unclear | 92.4 | 91.86 |
KRH24153 | Soybean | endoplasmic reticulum, mitochondrion, nucleus | 87.13 | 86.63 |
KRH60719 | Soybean | cytosol, endoplasmic reticulum, mitochondrion | 86.55 | 86.05 |
KRH29120 | Soybean | endoplasmic reticulum, nucleus | 85.96 | 85.47 |
KRH51416 | Soybean | cytosol | 85.38 | 84.88 |
VIT_03s0038g01930.t01 | Wine grape | cytosol | 83.63 | 83.14 |
VIT_18s0001g14400.t01 | Wine grape | extracellular | 83.04 | 82.56 |
GSMUA_Achr3P12630_001 | Banana | plasma membrane, unclear | 71.93 | 81.46 |
CDY12100 | Canola | cytosol | 81.87 | 81.4 |
CDX90292 | Canola | cytosol | 81.87 | 81.4 |
Bra010728.1-P | Field mustard | cytosol | 81.87 | 81.4 |
Zm00001d050635_P001 | Maize | plastid | 81.29 | 81.29 |
CDY22414 | Canola | cytosol, extracellular | 81.29 | 80.81 |
CDX72741 | Canola | cytosol | 81.29 | 80.81 |
Bra033574.1-P | Field mustard | cytosol | 81.29 | 80.81 |
TraesCS6D01G066700.1 | Wheat | golgi, plastid | 80.7 | 80.7 |
TraesCS6B01G093100.2 | Wheat | cytosol | 80.7 | 80.7 |
TraesCS6A01G068900.1 | Wheat | cytosol | 80.7 | 80.7 |
AT4G38740.1 | Thale cress | cytosol | 80.7 | 80.23 |
EES05164 | Sorghum | cytosol | 80.7 | 80.23 |
EES04388 | Sorghum | cytosol | 80.12 | 80.12 |
Zm00001d016661_P001 | Maize | plastid | 80.12 | 79.65 |
Zm00001d016660_P001 | Maize | cytosol | 80.12 | 79.65 |
AT2G21130.1 | Thale cress | cytosol | 80.12 | 78.74 |
Os02t0121300-01 | Rice | extracellular | 78.36 | 77.91 |
TraesCS6A01G405900.1 | Wheat | cytosol | 73.68 | 75.45 |
Solyc11g006070.1.1 | Tomato | cytosol, extracellular, unclear | 63.74 | 71.24 |
HORVU6Hr1G012570.2 | Barley | cytosol | 80.7 | 66.99 |
HORVU6Hr1G092950.1 | Barley | endoplasmic reticulum, golgi | 73.1 | 66.14 |
Solyc06g076970.2.1 | Tomato | nucleus | 69.01 | 57.0 |
TraesCS6B01G450300.1 | Wheat | cytosol | 71.93 | 56.16 |
Solyc01g096520.2.1 | Tomato | cytosol, nucleus, plastid | 61.4 | 55.26 |
TraesCS6B01G450400.1 | Wheat | cytosol | 68.42 | 53.42 |
TraesCS6A01G405800.1 | Wheat | cytosol | 76.02 | 52.63 |
Solyc06g051650.2.1 | Tomato | endoplasmic reticulum | 67.84 | 51.56 |
Solyc01g009990.2.1 | Tomato | plastid | 64.33 | 44.35 |
Solyc01g111360.2.1 | Tomato | endoplasmic reticulum | 53.22 | 39.91 |
Solyc01g108340.2.1 | Tomato | cytosol | 59.65 | 28.18 |
Solyc02g090480.2.1 | Tomato | cytosol | 57.31 | 27.15 |
Solyc09g065720.2.1 | Tomato | nucleus | 66.08 | 17.12 |
Solyc08g067090.2.1 | Tomato | nucleus | 48.54 | 10.26 |
Protein Annotations
MapMan:18.12.1 | Gene3D:2.40.100.10 | InterPro:Cyclophilin-like_dom_sf | InterPro:Cyclophilin-type_PPIase | InterPro:Cyclophilin-type_PPIase_CS | InterPro:Cyclophilin-type_PPIase_dom |
GO:GO:0000413 | GO:GO:0003674 | GO:GO:0003755 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 |
GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006457 | GO:GO:0006464 | GO:GO:0008150 |
GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016018 | GO:GO:0016853 | GO:GO:0019538 | InterPro:IPR002130 |
InterPro:IPR029000 | EMBL:M55019 | UniProt:P21568 | PFAM:PF00160 | PIRSF:PIRSF001467 | PRINTS:PR00153 |
ScanProsite:PS00170 | PFscan:PS50072 | PANTHER:PTHR11071 | PANTHER:PTHR11071:SF382 | SUPFAM:SSF50891 | EnsemblPlantsGene:Solyc01g111170.2 |
EnsemblPlants:Solyc01g111170.2.1 | UniParc:UPI0000128C8F | SEG:seg | : | : | : |
Description
CYPPeptidyl-prolyl cis-trans isomerase [Source:UniProtKB/Swiss-Prot;Acc:P21568]
Coordinates
chr1:+:97523336..97524346
Molecular Weight (calculated)
17911.6 Da
IEP (calculated)
8.757
GRAVY (calculated)
-0.109
Length
171 amino acids
Sequence
(BLAST)
(BLAST)
001: MANPKVFFDL TIGGAPAGRV VMELFADTTP KTAENFRALC TGEKGVGKMG KPLHYKGSTF HRVIPGFMCQ GGDFTAGNGT GGESIYGAKF NDENFVKKHT
101: GPGILSMANA GPGTNGSQFF ICTAKTEWLN GKHVVFGQVV EGMDVIKKAE AVGSSSGRCS KPVVIADCGQ L
101: GPGILSMANA GPGTNGSQFF ICTAKTEWLN GKHVVFGQVV EGMDVIKKAE AVGSSSGRCS KPVVIADCGQ L
001: MATNPKVYFD MTVGGKSAGR IVMELYADTT PETAENFRAL CTGERGIGKQ GKPLHYKGSS FHRVIPKFMC QGGDFTAGNG TGGESIYGSK FKDENFIKKH
101: TGPGILSMAN AGANTNGSQF FICTEKTSWL DGKHVVFGQV VEGLNVVRDI EKVGSDSGRT SKPVVIADCG QIS
101: TGPGILSMAN AGANTNGSQF FICTEKTSWL DGKHVVFGQV VEGLNVVRDI EKVGSDSGRT SKPVVIADCG QIS
Arabidopsis Description
CYP19-1Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178VVJ7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.