Factsheet for Solyc01g096520.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:

extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
cytosol 4
plastid 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400013826	Potato	cytosol, mitochondrion	99.47	99.47
VIT_13s0084g00620.t01	Wine grape	cytosol	83.68	84.13
KRH13330	Soybean	endoplasmic reticulum, nucleus	80.0	83.98
KRH37809	Soybean	nucleus	84.21	82.47
TraesCS5A01G467000.1	Wheat	golgi, unclear	83.16	79.8
TraesCS5B01G478800.1	Wheat	plastid	83.16	79.8
TraesCS5D01G479900.1	Wheat	nucleus	82.63	79.29
HORVU5Hr1G111410.1	Barley	plastid	82.63	79.29
KRH20677	Soybean	cytosol	76.32	79.23
CDX91486	Canola	cytosol	83.16	79.0
AT2G38730.1	Thale cress	cytosol	82.63	78.89
EER90660	Sorghum	plastid	83.16	78.61
Bra005088.1-P	Field mustard	plastid	83.68	77.94
CDX74892	Canola	cytosol, plastid	83.16	77.45
CDX93307	Canola	plastid	83.16	77.07
Bra017105.1-P	Field mustard	plastid	83.68	76.81
GSMUA_Achr2P00020_001	Banana	plastid	84.21	76.56
Os03t0811600-01	Rice	nucleus, plastid	82.11	76.47
CDY18371	Canola	cytosol, plastid	83.16	76.33
Solyc10g054910.1.1	Tomato	extracellular, unclear	56.32	62.21
Solyc01g111170.2.1	Tomato	extracellular, nucleus	55.26	61.4
Solyc11g006070.1.1	Tomato	cytosol, extracellular, unclear	45.26	56.21
Solyc06g076970.2.1	Tomato	nucleus	51.05	46.86
Zm00001d013010_P002	Maize	plastid	70.53	43.51
Solyc06g051650.2.1	Tomato	endoplasmic reticulum	50.53	42.67
Solyc01g009990.2.1	Tomato	plastid	50.0	38.31
Solyc01g111360.2.1	Tomato	endoplasmic reticulum	43.68	36.4
Solyc01g108340.2.1	Tomato	cytosol	50.0	26.24
Solyc02g090480.2.1	Tomato	cytosol	47.37	24.93
Solyc09g065720.2.1	Tomato	nucleus	50.0	14.39
Solyc08g067090.2.1	Tomato	nucleus	40.53	9.52

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom
GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005829	GO:GO:0005886	GO:GO:0006457
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016853
GO:GO:0019538	InterPro:IPR002130	InterPro:IPR029000	UniProt:K4B040	PFAM:PF00160	PIRSF:PIRSF001467
PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF58	SUPFAM:SSF50891
EnsemblPlantsGene:Solyc01g096520.2	EnsemblPlants:Solyc01g096520.2.1	UniParc:UPI0002767A6C	:	:	:

Description

Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:K4B040]

Coordinates

chr1:+:87600469..87605555

Molecular Weight (calculated)

20511.9 Da

IEP (calculated)

8.216

GRAVY (calculated)

-0.028

Length

190 amino acids

Sequence
(BLAST)

001: MASGGVGGGV VEWHLRPQVP KNPVVFFDVT IGNIPAGRIK MELFADITPK TAENFRQLCT GEFRKAGVPQ GFKNCQFHRV IKDFMIQGGD FLKGDGSGCV
101: SIYGSKFEDE NFIAKHTGPG LLSMANSGPN TNGCQFFVSC AKCEWLDNKH VVFGRVLGDG LLVVRKIENV AVGANNKPKL ACVIAECGEM

Best Arabidopsis Sequence Match ( AT2G38730.1 )
(BLAST)

001: MNSGGGIVAA AAPSSGGGNV EWHVRPPNPK NPVVFFDVSI GGIPAGRIKM ELFADIAPKT AENFRQFCTG ELRKAGKPLG YKECQFHRVI KDFMVQSGDF
101: LKNDGSGCMS IYGHKFEDEN FTAKHTGPGL LSMANSGPNT NGCQFFITCA KCDWLDNKHV VFGRVLGDGL LVMRKIENVA IGPNNRPKLA VVITECGEM

Arabidopsis Description

CYP22Peptidyl-prolyl cis-trans isomerase CYP22 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVJ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.