Factsheet for Solyc11g006070.1.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, extracellular, cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

unclear: 26455813
extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc11g072240.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56070.1	Solyc01g008950.2.1	AT5G21274.1	17360592
AT3G56070.1	Solyc10g077010.1.1	AT5G21274.1	17360592
AT3G56070.1	Solyc10g081170.1.1	AT5G21274.1	17360592
AT3G56070.1	Solyc11g072240.1.1	AT5G21274.1	17360592
AT3G56070.1	Solyc12g099990.1.1	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400073838	Potato	cytosol	98.04	85.71
VIT_14s0081g00700.t01	Wine grape	cytosol	80.39	70.69
KRG97056	Soybean	cytosol	80.39	70.29
KRH68802	Soybean	cytosol	79.74	69.71
EER96387	Sorghum	cytosol	77.78	68.0
Bra007214.1-P	Field mustard	cytosol	80.39	67.58
CDY27248	Canola	cytosol	80.39	67.58
AT3G56070.1	Thale cress	cytosol	77.12	67.05
CDX72175	Canola	cytosol	78.43	65.57
Os09t0571400-01	Rice	mitochondrion	76.47	65.36
Solyc10g054910.1.1	Tomato	extracellular, unclear	72.55	64.53
Solyc01g111170.2.1	Tomato	extracellular, nucleus	71.24	63.74
TraesCS4A01G312600.1	Wheat	cytosol, mitochondrion, plastid	73.86	62.78
TraesCS4D01G001600.1	Wheat	mitochondrion	73.2	62.57
HORVU4Hr1G000910.3	Barley	cytosol	73.2	56.28
Solyc06g076970.2.1	Tomato	nucleus	68.63	50.72
Solyc01g096520.2.1	Tomato	cytosol, nucleus, plastid	56.21	45.26
Solyc06g051650.2.1	Tomato	endoplasmic reticulum	65.36	44.44
Solyc01g111360.2.1	Tomato	endoplasmic reticulum	55.56	37.28
Solyc01g009990.2.1	Tomato	plastid	57.52	35.48
Solyc01g108340.2.1	Tomato	cytosol	64.05	27.07
Solyc02g090480.2.1	Tomato	cytosol	60.78	25.76
Solyc09g065720.2.1	Tomato	nucleus	67.97	15.76
Solyc08g067090.2.1	Tomato	nucleus	51.63	9.77

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom
GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005794	GO:GO:0006457	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	GO:GO:0046686
InterPro:IPR002130	InterPro:IPR029000	UniProt:K4D4M0	PFAM:PF00160	PIRSF:PIRSF001467	PRINTS:PR00153
ScanProsite:PS00170	PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF403	SUPFAM:SSF50891	EnsemblPlantsGene:Solyc11g006070.1
EnsemblPlants:Solyc11g006070.1.1	UniParc:UPI0002769C2A	SEG:seg	:	:	:

Description

Peptidyl-prolyl cis-trans isomerase CYP19-3 [Source:Projected from Arabidopsis thaliana (AT3G56070) UniProtKB/Swiss-Prot;Acc:Q38867]

Coordinates

chr11:-:861867..862328

Molecular Weight (calculated)

16490.6 Da

IEP (calculated)

6.503

GRAVY (calculated)

-0.314

Length

153 amino acids

Sequence
(BLAST)

001: MELFKDKTPK TAENFRALCT GEKGIGQLGK PLHYKGSGFH RIIPQFMCQG GDFTRGNGTG GESIYGTKFA DENFSVMHTI PGLLSMANSG RNTNGSQFFI
101: TTVATPWLDG KHVVFGKVVD GYNVVEAMEK VGSDSGKTSC PVLIDDCGEI TEN

Best Arabidopsis Sequence Match ( AT2G21130.1 )
(BLAST)

001: MASHPKVFFD MTIGGAPAGK IVMELYTDKT PKTAENFRAL CTGEKGVGRS GKPLHFKGSS FHRVIPNFMC QGGDFTKGNG TGGESIYGAK FEDENFERKH
101: TGPGILSMAN AGANTNGSQF FICTVKTDWL DGKHVVFGQV VEGLDVVKAI EKIGSSSGKP TKPVVIADCG EISS

Arabidopsis Description

CYP19-2Peptidyl-prolyl cis-trans isomerase CYP19-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKQ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.