Factsheet for Solyc09g065720.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400049782	Potato	nucleus	93.33	93.62
Solyc11g006070.1.1	Tomato	cytosol, extracellular, unclear	15.76	67.97
Solyc01g111170.2.1	Tomato	extracellular, nucleus	17.12	66.08
Solyc10g054910.1.1	Tomato	extracellular, unclear	17.12	65.7
CDY53714	Canola	nucleus	45.61	54.14
VIT_00s0179g00290.t01	Wine grape	endoplasmic reticulum, golgi	59.55	54.06
Bra040447.1-P	Field mustard	nucleus	43.03	53.69
AT3G63400.4	Thale cress	nucleus	45.91	53.16
Solyc06g076970.2.1	Tomato	nucleus	16.21	51.69
KRG95597	Soybean	nucleus	51.52	51.59
KRH67275	Soybean	nucleus	50.91	50.3
Solyc01g096520.2.1	Tomato	cytosol, nucleus, plastid	14.39	50.0
CDX93909	Canola	nucleus	45.15	48.69
Solyc06g051650.2.1	Tomato	endoplasmic reticulum	15.61	45.78
Solyc01g111360.2.1	Tomato	endoplasmic reticulum	15.3	44.3
HORVU2Hr1G056230.1	Barley	nucleus	40.91	43.55
TraesCS2B01G260600.1	Wheat	nucleus	41.82	43.46
TraesCS2D01G244700.1	Wheat	nucleus	41.52	43.08
TraesCS2A01G237700.1	Wheat	nucleus	41.36	42.46
GSMUA_Achr5P03050_001	Banana	nucleus	43.94	41.79
EER95944	Sorghum	nucleus	40.91	41.67
Solyc01g009990.2.1	Tomato	plastid	15.61	41.53
Zm00001d007826_P002	Maize	nucleus	40.0	39.4
Zm00001d018944_P004	Maize	nucleus	40.91	38.3
Solyc01g108340.2.1	Tomato	cytosol	19.7	35.91
Solyc02g090480.2.1	Tomato	cytosol	18.48	33.8
Solyc08g067090.2.1	Tomato	nucleus	39.7	32.39

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom
GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0006457	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	InterPro:IPR002130
InterPro:IPR029000	UniProt:K4CUJ8	PFAM:PF00160	PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50072
PANTHER:PTHR11071	PANTHER:PTHR11071:SF396	SUPFAM:SSF50891	EnsemblPlantsGene:Solyc09g065720.2	EnsemblPlants:Solyc09g065720.2.1	UniParc:UPI000276C92E
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr9:+:64010400..64015940

Molecular Weight (calculated)

73010.6 Da

IEP (calculated)

11.339

GRAVY (calculated)

-1.368

Length

660 amino acids

Sequence
(BLAST)

001: MSKKKNPLVF LDVSVDGDAA EKIVIELFAD TVPRTAENFR SLCTGEKGVG VSTGKPLHYK GCLFHRVIKG FMAQGGDFSK GNGTGGESIY GGKFPDENFK
101: VAHAEAGLLS MANSGPNTNG SQFFIIFKRT PHLDGKHVVF GKVVKGMDLV KKIEQLGTDS GKPSGLVKIV DCGELSEKKS NDTPKAEKGK NKKSARALSS
201: DDDSDSQEKG KSKSSTNRRK KKKRRYSSSD SYSSETDTDS SSDSDSDSKL DSYSSSSSGD ERRKKRKRST KKERSRHGKK KGRKSTSRRV DRNKRSRRKW
301: SSESSSDTDS QSMSSSSSGD SSDDENDRPN NSARKGLVKK LSNPVKGQAV LKQQQNLEEG EVSKNAKLPN NGHGGDVQND RTLSTNHQSD NSSRSRSTTP
401: SPKGKPRPSG RSSRSMSPEK VPGRLGQNGA SLPIESKERS LSKSPPPKAT QPSRSSPVRD LSRNHSPDGT SKRVRKGRGF TDRYSFARRY RTPSPERSSY
501: RPYYQGGRNF QGNRDRYSSY RSYSGRSPQV QYRRSPRGRS PPRYQRRSRS RSVSRSPRRE SRRCRSPSRS PSPREKRQPI SDRLKSRLGP RVDDQHSIPT
601: RRSASRSRSR DSTTPRSPSA APRKHSRKVG SASPNSSRST SPPRPRGLVS YEDISPCGTN

Best Arabidopsis Sequence Match ( AT3G63400.1 )
(BLAST)

001: MTKKKNPNVF LDVSIGGDPV QRIVIELFAD VVPKTAENFR ALCTGEAGVG KSTGKPLHFK GSSFHRVIKG FMAQGGDFSN GNGTGGESIY GGKFSDENFR
101: LDHDGAGVLS MANCGPNTNG SQFFILFKRQ PHLDGKHVVF GKVVEGMAVI KKMELVGTSD GKPTSPVKII DCGETSQIRA HDAAEREKGK SKKSNKNFSP
201: GDVSDREAKE TRKKESNEKR IKRKRRYSSS DSYSSSSDSD SDSESEAYSS SSYESSSSSD GKHRKRKSTT RHKGRRGERK SKGRSGKKKA RPDRKPSTNS
301: SSDTESSSSS DDEKVGHKAI KSVKVDNADQ HANLDDSVKS RSRSPIRRRN QNSRSKSPSR SPVRVLGNGN RSPSRSPVRD LGNGSRSPRE KPTEETVGKS
401: FRSPSPSGVP KRIRKGRGFT ERYSFARKYH TPSPERSPPR HWPDRRNFQD RNRDRYPSNR SYSERSPRGR FRSPPRRRSP PRYNRRRRST SRSPDGYRRR
501: LRDGSRSQSP RHRSRSQSPR KRQPISQDLK SRLGPQRSPI RGGRTSPAES LSPSHSPSPP GKRGLVSYAD

Arabidopsis Description

CYP63Peptidyl-prolyl cis-trans isomerase CYP63 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.