CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007826_P002	Maize	nucleus	87.96	85.07
Zm00001d018944_P004	Maize	nucleus	88.43	81.28
TraesCS2B01G260600.1	Wheat	nucleus	67.44	68.82
TraesCS2D01G244700.1	Wheat	nucleus	66.67	67.92
HORVU2Hr1G056230.1	Barley	nucleus	64.97	67.9
TraesCS2A01G237700.1	Wheat	nucleus	66.05	66.56
EER96387	Sorghum	cytosol	16.98	62.86
EES05164	Sorghum	cytosol	16.67	62.79
EES04388	Sorghum	cytosol	16.05	60.82
EER91725	Sorghum	cytosol	14.97	51.05
OQU77068	Sorghum	endoplasmic reticulum	15.74	47.89
OQU77069	Sorghum	mitochondrion	16.2	47.73
EER90660	Sorghum	plastid	13.89	44.78
EER97099	Sorghum	endoplasmic reticulum	14.81	44.44
EER88931	Sorghum	endoplasmic reticulum	14.97	43.89
AT3G63400.4	Thale cress	nucleus	38.43	43.68
EER88932	Sorghum	endoplasmic reticulum	14.66	42.99
CDY53714	Canola	nucleus	36.73	42.81
Bra040447.1-P	Field mustard	nucleus	34.57	42.34
PGSC0003DMT400049782	Potato	nucleus	41.98	41.34
GSMUA_Achr5P03050_001	Banana	nucleus	44.14	41.21
KRH67275	Soybean	nucleus	42.28	41.02
Solyc09g065720.2.1	Tomato	nucleus	41.67	40.91
KRG95597	Soybean	nucleus	41.05	40.36
VIT_00s0179g00290.t01	Wine grape	endoplasmic reticulum, golgi	43.36	38.65
CDX93909	Canola	nucleus	36.42	38.56
EES00602	Sorghum	plastid	14.35	38.43
EES17522	Sorghum	plastid	13.73	35.74
EER88080	Sorghum	cytosol	19.75	32.9
EES05845	Sorghum	cytosol	18.67	30.56
OQU84603	Sorghum	nucleus	34.57	26.92

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	EntrezGene:8060736	UniProt:C5XB10	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase
InterPro:Cyclophilin-type_PPIase_dom	EnsemblPlants:EER95944	ProteinID:EER95944	ProteinID:EER95944.1	GO:GO:0000413	GO:GO:0003674
GO:GO:0003755	GO:GO:0003824	GO:GO:0006457	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	InterPro:IPR002130	InterPro:IPR029000	PFAM:PF00160
PRINTS:PR00153	PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF396	EnsemblPlantsGene:SORBI_3002G052700	SUPFAM:SSF50891
unigene:Sbi.16047	UniParc:UPI0001A83009	RefSeq:XP_002459423.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:+:4995279..5000747

Molecular Weight (calculated)

71742.5 Da

IEP (calculated)

11.163

GRAVY (calculated)

-1.436

Length

648 amino acids

Sequence
(BLAST)

001: MSKVKNPHVF MDISIGGSSA ERITFELFAN VVPKTAENFR ALCTGERGLG ASTQKPLYYK GTNIHRIVKG FVAQGGDFSR GDGRGGESIY GGKFPDENFR
101: LLHDQPGVLS MANSGPDSNG SQFFITFKAL PHLDGKHVVF GKVVSGLDLL KKLEAVGGES GNPSRQVKIV DCGEVPNTDS QDLLKGEKGK KLRMADGNSN
201: AEGRAKLKKA SGDYKQRKKR KHYSSDSYSS DTSDSLSYSS DSGSDSESHS SMDTSSSSDH RRKRRKGSKK DKRKPTKRKG KHTRSKRKSR GSKRRSKRSY
301: GSSSDDSVSS KTDNSSSDSE NASRRTKRSL PKDKESTKMT NSEQGRSFQD ADKGKQTVTT VNRSQSPDGS KPSNKDDNRA DDRYGNYNSE DRNEPGASSR
401: INPIQVDVNL TKPVNGDGNI GGDNAEADMP RERHLPSNEP VSTNGKDLAA GSADNGQPQR IRKGRGFTQK YGYARRYRTP SPERPPVRPR YDGGRDDRWN
501: NFNRYGRNGP YSRRSPVRRY RGSPRANSPS RYPRRGRSRS RSRSPARRHD RGGYRRPSPR RSRSPAEQRR DVNDRPRSGR GGGDPDHRGH SPPANRSSLD
601: HRGHSPPPNR SRSPDAAPAK RESSKYNRRR SSSSRSSSPD GNKGLVSY

Best Arabidopsis Sequence Match ( AT3G63400.2 )
(BLAST)

001: MTKKKNPNVF LDVSIGGDPV QRIVIELFAD VVPKTAENFR ALCTGEAGVG KSTGKPLHFK GSSFHRVIKG FMAQGGDFSN GNGTGGESIY GGKFSDENFR
101: LDHDGAGVLS MANCGPNTNG SQFFILFKRQ PHLDGKHVVF GKVVEGMAVI KKMELVGTSD GKPTSPVKII DCGETSQIRA HDAAEREKGK SKKSNKNFSP
201: GDVSDREAKE TRKKESNEKR IKRKRRYSSS DSYSSSSDSD SDSESEAYSS SSYESSSSSD GKHRKRKSTT RHKGRRGERK SKGRSGKKKA RPDRKPSTNS
301: SSDTESSSSS DDGYRRRLRD GSRSQSPRHR SRSQSPRKRQ PISQDLKSRL GPQRSPIRGG RTSPAESLSP SHSPSPPGKR GLVSYAD

Arabidopsis Description

CYP63Peptidyl-prolyl cis-trans isomerase CYP63 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.