Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 8
- vacuole 5
- plasma membrane 5
- golgi 5
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G29960.1 | EER91946 | AT1G13980.1 | 10715321 |
| AT2G29960.1 | KXG37878 | AT1G13980.1 | 10715321 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER88932 | Sorghum | endoplasmic reticulum | 94.57 | 94.57 |
| OQU77068 | Sorghum | endoplasmic reticulum | 69.68 | 72.3 |
| Os06t0708400-01 | Rice | plasma membrane | 67.42 | 71.63 |
| Bra018353.1-P | Field mustard | endoplasmic reticulum | 60.63 | 66.67 |
| CDY55458 | Canola | endoplasmic reticulum | 60.63 | 66.67 |
| CDY58941 | Canola | endoplasmic reticulum | 60.63 | 66.67 |
| Bra006748.1-P | Field mustard | endoplasmic reticulum | 59.73 | 65.67 |
| CDY61026 | Canola | endoplasmic reticulum | 59.73 | 65.67 |
| GSMUA_Achr7P04880_001 | Banana | cytosol | 57.47 | 65.46 |
| CDX71155 | Canola | endoplasmic reticulum | 59.28 | 65.17 |
| CDX80340 | Canola | endoplasmic reticulum | 59.73 | 64.71 |
| CDY52123 | Canola | endoplasmic reticulum | 59.73 | 64.71 |
| AT2G29960.1 | Thale cress | endoplasmic reticulum | 58.37 | 64.18 |
| Bra002623.1-P | Field mustard | cytosol | 56.56 | 63.78 |
| AT5G58710.1 | Thale cress | endoplasmic reticulum | 58.37 | 63.24 |
| KRG98290 | Soybean | endoplasmic reticulum | 57.92 | 62.75 |
| KRH30309 | Soybean | endoplasmic reticulum | 57.47 | 62.25 |
| OQU77069 | Sorghum | mitochondrion | 61.54 | 61.82 |
| EES05164 | Sorghum | cytosol | 47.06 | 60.47 |
| EER96387 | Sorghum | cytosol | 46.61 | 58.86 |
| EES04388 | Sorghum | cytosol | 45.25 | 58.48 |
| EER97099 | Sorghum | endoplasmic reticulum | 47.06 | 48.15 |
| EER91725 | Sorghum | cytosol | 38.91 | 45.26 |
| EES17522 | Sorghum | plastid | 47.51 | 42.17 |
| EER90660 | Sorghum | plastid | 38.01 | 41.79 |
| EES00602 | Sorghum | plastid | 45.7 | 41.74 |
| EER88080 | Sorghum | cytosol | 42.99 | 24.42 |
| EES05845 | Sorghum | cytosol | 41.63 | 23.23 |
| EER95944 | Sorghum | nucleus | 43.89 | 14.97 |
| OQU84603 | Sorghum | nucleus | 32.58 | 8.65 |
Protein Annotations
| MapMan:18.12.1 | Gene3D:2.40.100.10 | EntrezGene:8064962 | UniProt:C5Z9C3 | InterPro:Cyclophilin-like_dom_sf | InterPro:Cyclophilin-type_PPIase |
| InterPro:Cyclophilin-type_PPIase_CS | InterPro:Cyclophilin-type_PPIase_dom | EnsemblPlants:EER88931 | ProteinID:EER88931 | ProteinID:EER88931.1 | GO:GO:0000413 |
| GO:GO:0003674 | GO:GO:0003755 | GO:GO:0003824 | GO:GO:0006457 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016853 | GO:GO:0019538 | InterPro:IPR002130 | InterPro:IPR029000 |
| PFAM:PF00160 | PIRSF:PIRSF001467 | PRINTS:PR00153 | ScanProsite:PS00170 | PFscan:PS50072 | PANTHER:PTHR11071 |
| PANTHER:PTHR11071:SF309 | EnsemblPlantsGene:SORBI_3010G257700 | SUPFAM:SSF50891 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0001A89045 |
| RefSeq:XP_002437564.1 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr10:+:59553126..59555274
Molecular Weight (calculated)
23506.3 Da
IEP (calculated)
6.789
GRAVY (calculated)
-0.076
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MATRSTVARA VPLCLWLALG VATLTLPQAH AAEADADLTK ITSKVFFDIQ IDGKPEGRIV IGLFGKTVPK TAENFRALST GEKGMGAYGE PLWYKGSTFH
101: RIIPGFMIQG GDFVNHNGTG CDTIYGKDVF PDENFKLNHA EPGTISMANY GKDTNGCQFA ITTVEGSKLP KKLDGVHVVF GKVVSGMDVV HKIEAQGQPS
201: GVPKAKVLIA DSGELPGSDE L
101: RIIPGFMIQG GDFVNHNGTG CDTIYGKDVF PDENFKLNHA EPGTISMANY GKDTNGCQFA ITTVEGSKLP KKLDGVHVVF GKVVSGMDVV HKIEAQGQPS
201: GVPKAKVLIA DSGELPGSDE L
001: MAKASFILLG TLFLFGAIAS IQAKEDLKEV THKVYFDVEI DGKSAGRVVI GLFGKAVPKT AENFRALCTG EKGVGKSGKP LHYKGSKFHR IIPSFMIQGG
101: DFTHGNGMGG ESIYGQKFAD ENFKLKHTGP GVLSMANSGE DTNGSQFFIT TVTTSWLDGR HVVFGKVVQG MDVVYKIEAE GKQSGTPKSK VVIADSGELP
201: L
101: DFTHGNGMGG ESIYGQKFAD ENFKLKHTGP GVLSMANSGE DTNGSQFFIT TVTTSWLDGR HVVFGKVVQG MDVVYKIEAE GKQSGTPKSK VVIADSGELP
201: L
Arabidopsis Description
CYP19-4Peptidyl-prolyl cis-trans isomerase CYP19-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDP4]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.