CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 3
cytosol 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88931
EER88932
EER91946
KXG37878
OQU77068

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13980.1	EER91946	AT1G13980.1	10715321
AT1G13980.1	KXG37878	AT1G13980.1	10715321
AT1G13980.1	EER91946	AT1G13980.1	18203920
AT1G13980.1	KXG37878	AT1G13980.1	18203920
AT1G13980.1	EER88931	AT2G29960.1	10715321
AT1G13980.1	EER88932	AT2G29960.1	10715321
AT1G13980.1	OQU77068	AT2G29960.1	10715321

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029910_P001	Maize	plastid	96.49	96.49
Zm00001d047092_P001	Maize	mitochondrion, plastid	95.86	96.13
Os02t0326600-01	Rice	cytosol, plasma membrane	62.69	89.76
TraesCS5A01G361300.1	Wheat	cytosol	79.87	88.85
TraesCS5D01G370200.1	Wheat	cytosol	84.57	87.97
TraesCS5B01G363900.1	Wheat	cytosol, plasma membrane	86.54	87.27
HORVU5Hr1G088970.4	Barley	plastid	78.19	84.86
GSMUA_Achr6P22810_001	Banana	golgi	55.19	67.96
GSMUA_Achr6P03140_001	Banana	cytosol, nucleus, plastid	36.19	62.93
KXG37878	Sorghum	cytosol	62.13	62.79
KRH31013	Soybean	cytosol	55.12	62.28
Solyc04g005560.2.1	Tomato	nucleus	62.97	62.23
Solyc05g013040.2.1	Tomato	cytosol	63.11	62.11
PGSC0003DMT400072858	Potato	cytosol	63.11	62.11
VIT_02s0012g01790.t01	Wine grape	cytosol	63.39	61.5
AT1G13980.1	Thale cress	cytosol	61.92	60.85
KRG97867	Soybean	cytosol	62.76	60.76
CDX98140	Canola	cytosol	61.64	60.7
Bra019694.1-P	Field mustard	cytosol	61.57	60.64
CDY36422	Canola	cytosol	61.5	60.52
KRH15072	Soybean	cytosol	60.24	58.12
KRH73064	Soybean	cytosol	59.68	57.81
KRG97865	Soybean	cytosol	59.19	57.3
KRH31014	Soybean	nucleus	58.56	56.69
CDY69502	Canola	cytosol	8.63	46.42
EES17039	Sorghum	cytosol	37.87	38.24
KXG29692	Sorghum	plastid	21.81	18.35
EER92558	Sorghum	cytosol	22.58	17.95
OQU76719	Sorghum	plastid	20.13	17.25
KXG36486	Sorghum	cytosol	20.27	16.95

Protein Annotations

Gene3D:1.10.1000.11	Gene3D:1.10.220.20	MapMan:22.3.3.1	EntrezGene:8055663	InterPro:ARM-type_fold	UniProt:C5WSF5
EnsemblPlants:EER91946	ProteinID:EER91946	ProteinID:EER91946.1	GO:GO:0003674	GO:GO:0005086	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794
GO:GO:0005802	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987
GO:GO:0016192	GO:GO:0032012	GO:GO:0065009	InterPro:IPR000904	InterPro:IPR023394	PFAM:PF01369
PFAM:PF12783	PFscan:PS50190	PANTHER:PTHR44190	PANTHER:PTHR44190:SF3	SMART:SM00222	EnsemblPlantsGene:SORBI_3001G301200
SUPFAM:SSF48371	SUPFAM:SSF48425	unigene:Sbi.6786	InterPro:Sec7_C_sf	InterPro:Sec7_N	InterPro:Sec7_dom
InterPro:Sec7_dom_sf	UniParc:UPI0001A824C0	RefSeq:XP_002464948.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:+:58278650..58284112

Molecular Weight (calculated)

158719.0 Da

IEP (calculated)

5.572

GRAVY (calculated)

-0.045

Length

1426 amino acids

Sequence
(BLAST)

0001: MGGLRAASPS GAGSGAVAGA GSDHGAPRLA MACVLASEAA TVLAVMRRNV RWAGVRYGGG DGGAGDDEHL DHPLVAGLKA LRRRAAAWGH GRWAGVEPLL
0101: YLRPFLDVVR SDETGAPITG AALSSLHKIL TLDLVGPGAP AAAEAMAAVV DAVTACRFEV TDPASEEAVL ARVLQVLLAC VRSRAAPALA NRHVCTIVNT
0201: CFRVVQQAGT KGELLQRVSR QTMQEVIRTV FARLPDIHVT VLSDEQVTGC KNQNLGAEET ENGKSDYVCL NSSGDEVGDG SGVVPDKDLM EPFGVPCMVE
0301: ILQFLCSLLN IAEDIKVNPR MSPIDFDEDV PLFALGLINS AIELSASSIH RHQKLLSFVQ DELFRNLMHF GLSMSPLILS TVCSIVFTLF YHLRHELKLQ
0401: IEAFFSCVIL RLAQSRYGAS YQQQEVALEA LIDFCRQKEF MAEMYANMDC DLQCSNIFEE LANLLSKSAF PVNSPLSALN VLALDGLVAV IQAMAQRTDN
0501: APQHHDQTVP EISEYFPFWQ LKCESSNDPD QWVKFVHQQK SIKRKLMVGV EHFNRDKKKG FEYLQGVHLL PEKLDPHNVA LFFRYTPGLD KNLLGDYLGN
0601: HDEFSIRVLH EFARTFDFKD MNLDAALRLF LETFRLPGES QKIQRILEAF SERYYEQSPQ MFVNRDAALV LSYSVIMLNT DQHNVRVKKK MTEEDFIRNN
0701: RRINGGNDLP REFLSELYYS ICRNEIRTIP EQGAGCSEMS FSRWVDLMWR SKRTSMYIAC DSYPFLDHDM FSVMAGPTVA AVSVVFDNVE HEEVLTGCID
0801: GFLSVAKLAA FYHLDDVLND LVVALSKFTT LLNTSYIDDP VTAFGEDTKA RMATEAVFTI ATAYGDHIRS GWRNIIDCIL RLHKIGLLPG CLTGDTTDDQ
0901: ESSSDSLPGK LASSAPQVLP ISTPRKTYGL MGRFSQLLYL DADEPRSQPT EEQLAAQRNA SETVKKCQIG TIFTESKFLQ ADSLSNLARA LIQAAGRPQK
1001: ITSSLDDEGI SVFCLELLIT VTLNNRDRIV LLWQDVFEHI THIVQSTVMP CNLVEKAVFG LLHICQRLLP YKANLVDDLL RSLQLILKLD ARVADAYCEN
1101: ITLEVTRLVK ANATHIKSQM GWRTIISLLC ITARHPDASD AGFEALVFIM SEGAHLSPAN FILSVEASRQ FAESRLGSAE RSIHALNLMA DSVNSLIRWS
1201: REVREAGGEA DRILEGIAEM WLRLVQALRK VCMDQREEVR NHALLSLHRC LVVDGISVKS STWLMAFDII FQLLDELLEI AQSYSPKDFR NMEVSLLHAV
1301: KLLCKVFLQS LKDLSGQGSF DKLWLEVLDM IEKFMKVKVR GRRTEKLQEA IPELVKNILM VMKASGILSK TGASENSIWE ATWLQVNKIA PSLQSEIFPD
1401: NEDGSTTQVE ENKLDTQAQS DKNNDQ

Best Arabidopsis Sequence Match ( AT1G13980.1 )
(BLAST)

0001: MGRLKLHSGI KAIEEEPEDF ECTDSSNTTT LACMIDTEIA AVLAVMRRNV RWGGRYMSGD DQLEHSLIQS LKALRKQVFS WNQPWHTISP MLYLQPFLDV
0101: IRSDETGAPI TSIALSSVYK ILNLNVIDQN TANIEDAMHL VVDSVTSCRF EVTDPASEEV VLMKILQVLL ACMKNKASVM LSNQHVCTVV NTCFRVVHQA
0201: GMKGELLQRV ARHTMHELVR CIFSHLPDVE RTETTLVNRA GSIKQEKAGV DSDYAIVSKP VEDGNANSEY DVENSMATFA TGAQSLMDDG PVGPGSRKPA
0301: SPYDLHIMTE PYGVPSMVEI FHFLCSLLNV VEHVGMGSRS NTIAFDEDVP LFALNLINSA IELGGSSIRH HPRLLSLIQD ELFRNLMQFG LSMSPLILSM
0401: VCSIVLNLYQ HLRTELKLQL EAFFSCVILR LAQGKYGPSY QQQEVAMEAL VNFCRQKSFM VEMYANLDCD ITCSNVFEEL SNLLSKSTFP VNCPLSAMHI
0501: LALDGLIAVI QGMAERISNG LTGLDLGPVH LDEYTPFWMV KCDNYSDPNH WVSFVRRRKY IKRRLMIGAD HFNRDPKKGL EFLQGTHLLP DKLDPQSVAC
0601: FFRYTAGLDK NLVGDFLGNH DEFCVQVLNE FAGTFDFQYM NLDTALRLFL ETFRLPGESQ KIQRVLEAFS ERYYMQSPEI LANKDAALVL SYSIIMLNTD
0701: QHNVQVKKKM TEEDFIRNNR HINGGNDLPR EFLSELFHSI CNNEIRTTPE QGAGFPEMTP SRWIDLMHKS KKTAPYILAD SRAYLDHDMF AIMSGPTIAA
0801: ISVVFDHAEH EDVYQTCIDG FLAIAKISAC HHLEDVLDDL VVSLCKFTTL LNPSSVDEPV LAFGDDAKAR MATITIFTIA NKYGDYIRTG WRNILDCILR
0901: LHKLGLLPAR VASDAADESE HSSEQGQGKP LANSLSSAHL QSMGTPRRSS GLMGRFSQLL SLDTEEPRSQ PTEQQLAAHQ RTLQTIQKCH IDSIFTESKF
1001: LQAESLLQLA RALIWAAGRP QKGTSSPEDE DTAVFCLELL IAITLNNRDR IVLLWQGVYE HIATIAQSTV MPCNLVDKAI FGLLRICQRL LPYKESLADE
1101: LLRSLQLVLK LDARVADAYC EQIAIEVSRL VKANANHIRS QAGWRTITSL LSITARHPEA SESGFDAVSF VMSEGTHLYP ANYVLCVDAA RQFAESRVGQ
1201: SERSIRALDL MGDSLEFLAK WALSAKENMG EEDFGKMSQD IGEMWLRLVQ GLRKVCLDQR EDVRNHALQS LQKCLGGVDG INLAHSMWSQ CFDKVIFTVL
1301: DDLLEIAAGS QKDYRNMEGT LLLAIKLLSK VFLQQLQELS QLSTFCKLWL GVLTRMEKYM KVKVRGKKSD KLQESVPELL KNILLVMKTK GVLLQRSALG
1401: GDSLWELTWL HVNNIAPSMR LELFPDQESS QLGDDETVSN GLSSPENTTG S

Arabidopsis Description

GNARF guanine-nucleotide exchange factor GNOM [Source:UniProtKB/Swiss-Prot;Acc:Q42510]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.