Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX98140 | Canola | cytosol | 95.24 | 95.44 |
| Bra019694.1-P | Field mustard | cytosol | 95.11 | 95.3 |
| CDY36422 | Canola | cytosol | 95.11 | 95.24 |
| CDY69502 | Canola | cytosol | 16.88 | 92.45 |
| VIT_02s0012g01790.t01 | Wine grape | cytosol | 83.53 | 82.45 |
| KRG97867 | Soybean | cytosol | 82.49 | 81.26 |
| PGSC0003DMT400072858 | Potato | cytosol | 80.43 | 80.54 |
| Solyc05g013040.2.1 | Tomato | cytosol | 80.01 | 80.12 |
| Solyc04g005560.2.1 | Tomato | nucleus | 78.98 | 79.42 |
| Os03t0666100-00 | Rice | extracellular, golgi | 61.96 | 74.24 |
| GSMUA_Achr6P22810_001 | Banana | golgi | 59.2 | 74.18 |
| GSMUA_Achr6P03140_001 | Banana | cytosol, nucleus, plastid | 41.49 | 73.41 |
| Zm00001d013590_P001 | Maize | mitochondrion | 68.3 | 70.04 |
| KXG37878 | Sorghum | cytosol | 67.88 | 69.81 |
| TraesCS4D01G016900.1 | Wheat | cytosol | 66.57 | 68.32 |
| TraesCS4A01G294900.1 | Wheat | cytosol | 66.44 | 68.08 |
| TraesCS4B01G018700.1 | Wheat | cytosol | 66.3 | 67.99 |
| Os02t0326600-01 | Rice | cytosol, plasma membrane | 44.73 | 65.16 |
| TraesCS5A01G361300.1 | Wheat | cytosol | 56.93 | 64.43 |
| TraesCS5D01G370200.1 | Wheat | cytosol | 59.48 | 62.95 |
| HORVU4Hr1G002880.3 | Barley | cytosol | 61.68 | 62.94 |
| TraesCS5B01G363900.1 | Wheat | cytosol, plasma membrane | 60.79 | 62.38 |
| AT5G39500.1 | Thale cress | cytosol | 61.61 | 61.95 |
| EER91946 | Sorghum | plastid | 60.85 | 61.92 |
| HORVU5Hr1G088970.4 | Barley | plastid | 55.89 | 61.72 |
| Zm00001d047092_P001 | Maize | mitochondrion, plastid | 60.17 | 61.39 |
| Zm00001d029910_P001 | Maize | plastid | 60.3 | 61.36 |
| HORVU3Hr1G017750.4 | Barley | cytosol | 41.42 | 60.83 |
| TraesCS3A01G098600.1 | Wheat | cytosol, plastid | 57.0 | 59.63 |
| TraesCS3B01G114200.1 | Wheat | plastid | 56.79 | 58.61 |
| AT5G19610.1 | Thale cress | cytosol | 41.08 | 43.35 |
| AT4G38200.1 | Thale cress | cytosol, mitochondrion, plastid | 20.95 | 18.02 |
| AT1G01960.1 | Thale cress | cytosol | 21.71 | 18.0 |
| AT3G60860.1 | Thale cress | cytosol | 21.98 | 17.79 |
| AT4G35380.1 | Thale cress | cytosol, plasma membrane, plastid | 20.74 | 17.64 |
| AT3G43300.1 | Thale cress | cytosol | 18.4 | 15.19 |
Protein Annotations
| Gene3D:1.10.1000.11 | Gene3D:1.10.220.20 | MapMan:22.3.3.1 | EntrezGene:837958 | ProteinID:AAA91151.1 | ProteinID:AAB01206.1 |
| ProteinID:AAD39284.1 | ProteinID:AAF79403.1 | ProteinID:AEE29092.1 | ProteinID:AEE29093.1 | EMBL:AK220827 | InterPro:ARM-type_fold |
| ArrayExpress:AT1G13980 | EnsemblPlantsGene:AT1G13980 | RefSeq:AT1G13980 | TAIR:AT1G13980 | RefSeq:AT1G13980-TAIR-G | EnsemblPlants:AT1G13980.1 |
| TAIR:AT1G13980.1 | Unigene:At.9165 | Symbol:GN | GO:GO:0000003 | GO:GO:0000911 | GO:GO:0001736 |
| GO:GO:0003674 | GO:GO:0005085 | GO:GO:0005086 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005768 | GO:GO:0005794 | GO:GO:0005802 |
| GO:GO:0005829 | GO:GO:0005886 | GO:GO:0006810 | GO:GO:0006897 | GO:GO:0007049 | GO:GO:0007154 |
| GO:GO:0007155 | GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009605 | GO:GO:0009606 |
| GO:GO:0009653 | GO:GO:0009790 | GO:GO:0009791 | GO:GO:0009793 | GO:GO:0009826 | GO:GO:0009880 |
| GO:GO:0009942 | GO:GO:0009987 | GO:GO:0010008 | GO:GO:0010087 | GO:GO:0010274 | GO:GO:0010311 |
| GO:GO:0010540 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016049 | GO:GO:0016192 |
| GO:GO:0030154 | GO:GO:0032012 | GO:GO:0032509 | GO:GO:0040007 | GO:GO:0042802 | GO:GO:0042803 |
| GO:GO:0048209 | GO:GO:0048765 | GO:GO:0065009 | GO:GO:0071555 | InterPro:IPR000904 | InterPro:IPR023394 |
| RefSeq:NP_001184991.1 | RefSeq:NP_172851.1 | PFAM:PF01369 | PFAM:PF12783 | PO:PO:0000003 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50190 | PANTHER:PTHR44190 | PANTHER:PTHR44190:SF1 |
| UniProt:Q42510 | SMART:SM00222 | SUPFAM:SSF48371 | SUPFAM:SSF48425 | InterPro:Sec7_C_sf | InterPro:Sec7_N |
| InterPro:Sec7_dom | InterPro:Sec7_dom_sf | EMBL:U36432 | EMBL:U56140 | UniParc:UPI0000129E82 | SEG:seg |
Description
GNARF guanine-nucleotide exchange factor GNOM [Source:UniProtKB/Swiss-Prot;Acc:Q42510]
Coordinates
chr1:+:4788550..4794654
Molecular Weight (calculated)
162628.0 Da
IEP (calculated)
5.741
GRAVY (calculated)
-0.098
Length
1451 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGRLKLHSGI KAIEEEPEDF ECTDSSNTTT LACMIDTEIA AVLAVMRRNV RWGGRYMSGD DQLEHSLIQS LKALRKQVFS WNQPWHTISP MLYLQPFLDV
0101: IRSDETGAPI TSIALSSVYK ILNLNVIDQN TANIEDAMHL VVDSVTSCRF EVTDPASEEV VLMKILQVLL ACMKNKASVM LSNQHVCTVV NTCFRVVHQA
0201: GMKGELLQRV ARHTMHELVR CIFSHLPDVE RTETTLVNRA GSIKQEKAGV DSDYAIVSKP VEDGNANSEY DVENSMATFA TGAQSLMDDG PVGPGSRKPA
0301: SPYDLHIMTE PYGVPSMVEI FHFLCSLLNV VEHVGMGSRS NTIAFDEDVP LFALNLINSA IELGGSSIRH HPRLLSLIQD ELFRNLMQFG LSMSPLILSM
0401: VCSIVLNLYQ HLRTELKLQL EAFFSCVILR LAQGKYGPSY QQQEVAMEAL VNFCRQKSFM VEMYANLDCD ITCSNVFEEL SNLLSKSTFP VNCPLSAMHI
0501: LALDGLIAVI QGMAERISNG LTGLDLGPVH LDEYTPFWMV KCDNYSDPNH WVSFVRRRKY IKRRLMIGAD HFNRDPKKGL EFLQGTHLLP DKLDPQSVAC
0601: FFRYTAGLDK NLVGDFLGNH DEFCVQVLNE FAGTFDFQYM NLDTALRLFL ETFRLPGESQ KIQRVLEAFS ERYYMQSPEI LANKDAALVL SYSIIMLNTD
0701: QHNVQVKKKM TEEDFIRNNR HINGGNDLPR EFLSELFHSI CNNEIRTTPE QGAGFPEMTP SRWIDLMHKS KKTAPYILAD SRAYLDHDMF AIMSGPTIAA
0801: ISVVFDHAEH EDVYQTCIDG FLAIAKISAC HHLEDVLDDL VVSLCKFTTL LNPSSVDEPV LAFGDDAKAR MATITIFTIA NKYGDYIRTG WRNILDCILR
0901: LHKLGLLPAR VASDAADESE HSSEQGQGKP LANSLSSAHL QSMGTPRRSS GLMGRFSQLL SLDTEEPRSQ PTEQQLAAHQ RTLQTIQKCH IDSIFTESKF
1001: LQAESLLQLA RALIWAAGRP QKGTSSPEDE DTAVFCLELL IAITLNNRDR IVLLWQGVYE HIATIAQSTV MPCNLVDKAI FGLLRICQRL LPYKESLADE
1101: LLRSLQLVLK LDARVADAYC EQIAIEVSRL VKANANHIRS QAGWRTITSL LSITARHPEA SESGFDAVSF VMSEGTHLYP ANYVLCVDAA RQFAESRVGQ
1201: SERSIRALDL MGDSLEFLAK WALSAKENMG EEDFGKMSQD IGEMWLRLVQ GLRKVCLDQR EDVRNHALQS LQKCLGGVDG INLAHSMWSQ CFDKVIFTVL
1301: DDLLEIAAGS QKDYRNMEGT LLLAIKLLSK VFLQQLQELS QLSTFCKLWL GVLTRMEKYM KVKVRGKKSD KLQESVPELL KNILLVMKTK GVLLQRSALG
1401: GDSLWELTWL HVNNIAPSMR LELFPDQESS QLGDDETVSN GLSSPENTTG S
0101: IRSDETGAPI TSIALSSVYK ILNLNVIDQN TANIEDAMHL VVDSVTSCRF EVTDPASEEV VLMKILQVLL ACMKNKASVM LSNQHVCTVV NTCFRVVHQA
0201: GMKGELLQRV ARHTMHELVR CIFSHLPDVE RTETTLVNRA GSIKQEKAGV DSDYAIVSKP VEDGNANSEY DVENSMATFA TGAQSLMDDG PVGPGSRKPA
0301: SPYDLHIMTE PYGVPSMVEI FHFLCSLLNV VEHVGMGSRS NTIAFDEDVP LFALNLINSA IELGGSSIRH HPRLLSLIQD ELFRNLMQFG LSMSPLILSM
0401: VCSIVLNLYQ HLRTELKLQL EAFFSCVILR LAQGKYGPSY QQQEVAMEAL VNFCRQKSFM VEMYANLDCD ITCSNVFEEL SNLLSKSTFP VNCPLSAMHI
0501: LALDGLIAVI QGMAERISNG LTGLDLGPVH LDEYTPFWMV KCDNYSDPNH WVSFVRRRKY IKRRLMIGAD HFNRDPKKGL EFLQGTHLLP DKLDPQSVAC
0601: FFRYTAGLDK NLVGDFLGNH DEFCVQVLNE FAGTFDFQYM NLDTALRLFL ETFRLPGESQ KIQRVLEAFS ERYYMQSPEI LANKDAALVL SYSIIMLNTD
0701: QHNVQVKKKM TEEDFIRNNR HINGGNDLPR EFLSELFHSI CNNEIRTTPE QGAGFPEMTP SRWIDLMHKS KKTAPYILAD SRAYLDHDMF AIMSGPTIAA
0801: ISVVFDHAEH EDVYQTCIDG FLAIAKISAC HHLEDVLDDL VVSLCKFTTL LNPSSVDEPV LAFGDDAKAR MATITIFTIA NKYGDYIRTG WRNILDCILR
0901: LHKLGLLPAR VASDAADESE HSSEQGQGKP LANSLSSAHL QSMGTPRRSS GLMGRFSQLL SLDTEEPRSQ PTEQQLAAHQ RTLQTIQKCH IDSIFTESKF
1001: LQAESLLQLA RALIWAAGRP QKGTSSPEDE DTAVFCLELL IAITLNNRDR IVLLWQGVYE HIATIAQSTV MPCNLVDKAI FGLLRICQRL LPYKESLADE
1101: LLRSLQLVLK LDARVADAYC EQIAIEVSRL VKANANHIRS QAGWRTITSL LSITARHPEA SESGFDAVSF VMSEGTHLYP ANYVLCVDAA RQFAESRVGQ
1201: SERSIRALDL MGDSLEFLAK WALSAKENMG EEDFGKMSQD IGEMWLRLVQ GLRKVCLDQR EDVRNHALQS LQKCLGGVDG INLAHSMWSQ CFDKVIFTVL
1301: DDLLEIAAGS QKDYRNMEGT LLLAIKLLSK VFLQQLQELS QLSTFCKLWL GVLTRMEKYM KVKVRGKKSD KLQESVPELL KNILLVMKTK GVLLQRSALG
1401: GDSLWELTWL HVNNIAPSMR LELFPDQESS QLGDDETVSN GLSSPENTTG S
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.