Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G018700.1 | Wheat | cytosol | 98.23 | 98.16 |
| TraesCS4A01G294900.1 | Wheat | cytosol | 98.23 | 98.09 |
| Os03t0666100-00 | Rice | extracellular, golgi | 76.8 | 89.68 |
| KXG37878 | Sorghum | cytosol | 88.26 | 88.45 |
| Zm00001d013590_P001 | Maize | mitochondrion | 87.48 | 87.42 |
| HORVU4Hr1G002880.3 | Barley | cytosol | 85.43 | 84.95 |
| GSMUA_Achr6P22810_001 | Banana | golgi | 59.76 | 72.97 |
| VIT_02s0012g01790.t01 | Wine grape | cytosol | 70.23 | 67.55 |
| KRH31013 | Soybean | cytosol | 60.11 | 67.35 |
| PGSC0003DMT400072858 | Potato | cytosol | 68.6 | 66.94 |
| Solyc04g005560.2.1 | Tomato | nucleus | 68.25 | 66.87 |
| KRG97867 | Soybean | cytosol | 69.45 | 66.67 |
| AT1G13980.1 | Thale cress | cytosol | 68.32 | 66.57 |
| Solyc05g013040.2.1 | Tomato | cytosol | 68.1 | 66.46 |
| CDX98140 | Canola | cytosol | 67.75 | 66.16 |
| Bra019694.1-P | Field mustard | cytosol | 67.75 | 66.16 |
| CDY36422 | Canola | cytosol | 67.68 | 66.05 |
| GSMUA_Achr6P03140_001 | Banana | cytosol, nucleus, plastid | 38.05 | 65.61 |
| TraesCS5D01G370200.1 | Wheat | cytosol | 59.69 | 61.56 |
| KRH73064 | Soybean | cytosol | 63.93 | 61.41 |
| KRH15072 | Soybean | cytosol | 63.65 | 60.89 |
| KRG97865 | Soybean | cytosol | 61.81 | 59.33 |
| KRH31014 | Soybean | nucleus | 61.6 | 59.13 |
| TraesCS3D01G246200.1 | Wheat | cytosol | 40.1 | 40.82 |
| CDY69502 | Canola | cytosol | 7.43 | 39.62 |
| TraesCS6D01G157000.1 | Wheat | plastid | 21.43 | 18.01 |
| TraesCS7D01G392600.1 | Wheat | cytosol, plasma membrane, plastid | 21.0 | 17.58 |
| TraesCS4D01G225300.1 | Wheat | golgi, unclear | 22.14 | 17.51 |
| TraesCS2D01G212800.2 | Wheat | golgi | 19.8 | 16.33 |
Protein Annotations
| Gene3D:1.10.1000.11 | Gene3D:1.10.220.20 | MapMan:22.3.3.1 | InterPro:ARM-type_fold | GO:GO:0003674 | GO:GO:0005086 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0032012 | InterPro:IPR000904 | InterPro:IPR023394 | PFAM:PF01369 | PFAM:PF12783 | PFscan:PS50190 |
| PANTHER:PTHR44190 | PANTHER:PTHR44190:SF3 | SMART:SM00222 | SUPFAM:SSF48371 | SUPFAM:SSF48425 | InterPro:Sec7_C_sf |
| InterPro:Sec7_N | InterPro:Sec7_dom | InterPro:Sec7_dom_sf | EnsemblPlantsGene:TraesCS4D01G016900 | EnsemblPlants:TraesCS4D01G016900.1 | TIGR:cd00171 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr4D:+:7642934..7648520
Molecular Weight (calculated)
156379.0 Da
IEP (calculated)
6.102
GRAVY (calculated)
-0.050
Length
1414 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGRPRPLNSG GIDPIAEESS PSPPHHPPPH GDPAALACAI SAQASAVLAV MRRGLRHPRA AAADDAAADH PLVASLKALR RLAFAPLAAA SPSLPAAALR
0101: PFLDAVRSED AGADATSAAL AALHEVMALT APALPGSALR EVVDAVACCR FEAGAEPAAE EDVLMRMLQA LLACLRAPAA PALGDQHVLT AVNTCFRVVH
0201: QAAAKGELLQ RFSRHVMHEL VRLVFARLPL IGAGDADDAA VKPEMGGMDK NHPFGIGQME NGNGSYVSEA GTPDENSPDG SVLVVEPYGT PCMEEIFHFL
0301: CSLLSGVELN GYDEGQPLFA LKLINSAIEL GGSAIGRHPK VLSLVQDELF RNLMQLGLSI SPLTLSVVCS IVLNLYHHLR NELKMQLEAF FCCIILRLAQ
0401: PRFGATYHQQ EVAMEALVDF CRQKNFMVEM YANLDCDITC RNVFEELANL LSKSAFPINC PLSSMHILAL EGLIAVIQGM ADRIGNATSG PELRSVELDE
0501: YAPFWTVKCE NFLDPQHWVK FVRQRKYVKR RLMIGADHFN RDPKKGLEFL QGNHLLPEKL DPQSVACFFR YTAGLDKNLV GDFLGNHDEF CVQVLHEFAQ
0601: TFDFEEMNLD TALRLFLETF RLPGESQKIQ RVLEAFSDRY YEQAPQAFAN KDTALLLSYS IIMLNTDQHN MQVKKKMTEE DFIKNNRNIN GGSDLPREML
0701: SELYHAICRN EIKTTPEQGM GYLEMSPSRW IDLMRKSKST PQYIVGDSQP FLDHDMFAIM SGPTIAAIAV VFDHSEHEEV LLTCVDGFLG IAKISAFHHL
0801: EDVLDDLVVS LCKFTTLLNT SLVEEPVTAF GDDLKARLAT ETLFTIANKY GHYIRTGWRN VLDCILRLHK LGLLPARVAS DAADDSEVSA ETVQGKPVPS
0901: SISTSHIPVM GTPRKSSGLM GRFSQLLSLD SEEPRSQPTE QQLAAHQRTL QTIQKCRIDG IFTESKVLQP DSLLQLARAL IWAAGRPQKV ASSPDDEDTA
1001: VFCLELLIAI TLNNRDRIVL LWQGVYEHIA NIVQSTVMPC ALVEKAIFGL LRICQRLLPY KENLADELLR SLQLVLKLDA RVADAYCENI TQEVARLVKA
1101: NAGHIKSQMG WRTVVLLLSI TARHPDASGV GFEAIMFIMS EGHLSRSNYA FCIEASRQFA ESRVGLTDRS IRALDLMADS VTYLARWSQD TKEPGEEADR
1201: GVEAIREMWL KLLQALKKLS LDQREEVRNH ALVSLQRCLT ATEGIGLQST TWSHAFDHII FALLDDLLEI AQNHSQKDHR NMEGSLVLAV KLVAKVYLQL
1301: LPDLFGLSSF CKLWLGVLSR MEKCIKTKVR GKRSDKLQEL IPDLLRNILV AMKSRGILAK RSTIGGDSLW ELTWLHVNNI STGLQSEVFP SQEYEPPSNA
1401: GSPRGGLNDA EIKN
0101: PFLDAVRSED AGADATSAAL AALHEVMALT APALPGSALR EVVDAVACCR FEAGAEPAAE EDVLMRMLQA LLACLRAPAA PALGDQHVLT AVNTCFRVVH
0201: QAAAKGELLQ RFSRHVMHEL VRLVFARLPL IGAGDADDAA VKPEMGGMDK NHPFGIGQME NGNGSYVSEA GTPDENSPDG SVLVVEPYGT PCMEEIFHFL
0301: CSLLSGVELN GYDEGQPLFA LKLINSAIEL GGSAIGRHPK VLSLVQDELF RNLMQLGLSI SPLTLSVVCS IVLNLYHHLR NELKMQLEAF FCCIILRLAQ
0401: PRFGATYHQQ EVAMEALVDF CRQKNFMVEM YANLDCDITC RNVFEELANL LSKSAFPINC PLSSMHILAL EGLIAVIQGM ADRIGNATSG PELRSVELDE
0501: YAPFWTVKCE NFLDPQHWVK FVRQRKYVKR RLMIGADHFN RDPKKGLEFL QGNHLLPEKL DPQSVACFFR YTAGLDKNLV GDFLGNHDEF CVQVLHEFAQ
0601: TFDFEEMNLD TALRLFLETF RLPGESQKIQ RVLEAFSDRY YEQAPQAFAN KDTALLLSYS IIMLNTDQHN MQVKKKMTEE DFIKNNRNIN GGSDLPREML
0701: SELYHAICRN EIKTTPEQGM GYLEMSPSRW IDLMRKSKST PQYIVGDSQP FLDHDMFAIM SGPTIAAIAV VFDHSEHEEV LLTCVDGFLG IAKISAFHHL
0801: EDVLDDLVVS LCKFTTLLNT SLVEEPVTAF GDDLKARLAT ETLFTIANKY GHYIRTGWRN VLDCILRLHK LGLLPARVAS DAADDSEVSA ETVQGKPVPS
0901: SISTSHIPVM GTPRKSSGLM GRFSQLLSLD SEEPRSQPTE QQLAAHQRTL QTIQKCRIDG IFTESKVLQP DSLLQLARAL IWAAGRPQKV ASSPDDEDTA
1001: VFCLELLIAI TLNNRDRIVL LWQGVYEHIA NIVQSTVMPC ALVEKAIFGL LRICQRLLPY KENLADELLR SLQLVLKLDA RVADAYCENI TQEVARLVKA
1101: NAGHIKSQMG WRTVVLLLSI TARHPDASGV GFEAIMFIMS EGHLSRSNYA FCIEASRQFA ESRVGLTDRS IRALDLMADS VTYLARWSQD TKEPGEEADR
1201: GVEAIREMWL KLLQALKKLS LDQREEVRNH ALVSLQRCLT ATEGIGLQST TWSHAFDHII FALLDDLLEI AQNHSQKDHR NMEGSLVLAV KLVAKVYLQL
1301: LPDLFGLSSF CKLWLGVLSR MEKCIKTKVR GKRSDKLQEL IPDLLRNILV AMKSRGILAK RSTIGGDSLW ELTWLHVNNI STGLQSEVFP SQEYEPPSNA
1401: GSPRGGLNDA EIKN
0001: MGRLKLHSGI KAIEEEPEDF ECTDSSNTTT LACMIDTEIA AVLAVMRRNV RWGGRYMSGD DQLEHSLIQS LKALRKQVFS WNQPWHTISP MLYLQPFLDV
0101: IRSDETGAPI TSIALSSVYK ILNLNVIDQN TANIEDAMHL VVDSVTSCRF EVTDPASEEV VLMKILQVLL ACMKNKASVM LSNQHVCTVV NTCFRVVHQA
0201: GMKGELLQRV ARHTMHELVR CIFSHLPDVE RTETTLVNRA GSIKQEKAGV DSDYAIVSKP VEDGNANSEY DVENSMATFA TGAQSLMDDG PVGPGSRKPA
0301: SPYDLHIMTE PYGVPSMVEI FHFLCSLLNV VEHVGMGSRS NTIAFDEDVP LFALNLINSA IELGGSSIRH HPRLLSLIQD ELFRNLMQFG LSMSPLILSM
0401: VCSIVLNLYQ HLRTELKLQL EAFFSCVILR LAQGKYGPSY QQQEVAMEAL VNFCRQKSFM VEMYANLDCD ITCSNVFEEL SNLLSKSTFP VNCPLSAMHI
0501: LALDGLIAVI QGMAERISNG LTGLDLGPVH LDEYTPFWMV KCDNYSDPNH WVSFVRRRKY IKRRLMIGAD HFNRDPKKGL EFLQGTHLLP DKLDPQSVAC
0601: FFRYTAGLDK NLVGDFLGNH DEFCVQVLNE FAGTFDFQYM NLDTALRLFL ETFRLPGESQ KIQRVLEAFS ERYYMQSPEI LANKDAALVL SYSIIMLNTD
0701: QHNVQVKKKM TEEDFIRNNR HINGGNDLPR EFLSELFHSI CNNEIRTTPE QGAGFPEMTP SRWIDLMHKS KKTAPYILAD SRAYLDHDMF AIMSGPTIAA
0801: ISVVFDHAEH EDVYQTCIDG FLAIAKISAC HHLEDVLDDL VVSLCKFTTL LNPSSVDEPV LAFGDDAKAR MATITIFTIA NKYGDYIRTG WRNILDCILR
0901: LHKLGLLPAR VASDAADESE HSSEQGQGKP LANSLSSAHL QSMGTPRRSS GLMGRFSQLL SLDTEEPRSQ PTEQQLAAHQ RTLQTIQKCH IDSIFTESKF
1001: LQAESLLQLA RALIWAAGRP QKGTSSPEDE DTAVFCLELL IAITLNNRDR IVLLWQGVYE HIATIAQSTV MPCNLVDKAI FGLLRICQRL LPYKESLADE
1101: LLRSLQLVLK LDARVADAYC EQIAIEVSRL VKANANHIRS QAGWRTITSL LSITARHPEA SESGFDAVSF VMSEGTHLYP ANYVLCVDAA RQFAESRVGQ
1201: SERSIRALDL MGDSLEFLAK WALSAKENMG EEDFGKMSQD IGEMWLRLVQ GLRKVCLDQR EDVRNHALQS LQKCLGGVDG INLAHSMWSQ CFDKVIFTVL
1301: DDLLEIAAGS QKDYRNMEGT LLLAIKLLSK VFLQQLQELS QLSTFCKLWL GVLTRMEKYM KVKVRGKKSD KLQESVPELL KNILLVMKTK GVLLQRSALG
1401: GDSLWELTWL HVNNIAPSMR LELFPDQESS QLGDDETVSN GLSSPENTTG S
0101: IRSDETGAPI TSIALSSVYK ILNLNVIDQN TANIEDAMHL VVDSVTSCRF EVTDPASEEV VLMKILQVLL ACMKNKASVM LSNQHVCTVV NTCFRVVHQA
0201: GMKGELLQRV ARHTMHELVR CIFSHLPDVE RTETTLVNRA GSIKQEKAGV DSDYAIVSKP VEDGNANSEY DVENSMATFA TGAQSLMDDG PVGPGSRKPA
0301: SPYDLHIMTE PYGVPSMVEI FHFLCSLLNV VEHVGMGSRS NTIAFDEDVP LFALNLINSA IELGGSSIRH HPRLLSLIQD ELFRNLMQFG LSMSPLILSM
0401: VCSIVLNLYQ HLRTELKLQL EAFFSCVILR LAQGKYGPSY QQQEVAMEAL VNFCRQKSFM VEMYANLDCD ITCSNVFEEL SNLLSKSTFP VNCPLSAMHI
0501: LALDGLIAVI QGMAERISNG LTGLDLGPVH LDEYTPFWMV KCDNYSDPNH WVSFVRRRKY IKRRLMIGAD HFNRDPKKGL EFLQGTHLLP DKLDPQSVAC
0601: FFRYTAGLDK NLVGDFLGNH DEFCVQVLNE FAGTFDFQYM NLDTALRLFL ETFRLPGESQ KIQRVLEAFS ERYYMQSPEI LANKDAALVL SYSIIMLNTD
0701: QHNVQVKKKM TEEDFIRNNR HINGGNDLPR EFLSELFHSI CNNEIRTTPE QGAGFPEMTP SRWIDLMHKS KKTAPYILAD SRAYLDHDMF AIMSGPTIAA
0801: ISVVFDHAEH EDVYQTCIDG FLAIAKISAC HHLEDVLDDL VVSLCKFTTL LNPSSVDEPV LAFGDDAKAR MATITIFTIA NKYGDYIRTG WRNILDCILR
0901: LHKLGLLPAR VASDAADESE HSSEQGQGKP LANSLSSAHL QSMGTPRRSS GLMGRFSQLL SLDTEEPRSQ PTEQQLAAHQ RTLQTIQKCH IDSIFTESKF
1001: LQAESLLQLA RALIWAAGRP QKGTSSPEDE DTAVFCLELL IAITLNNRDR IVLLWQGVYE HIATIAQSTV MPCNLVDKAI FGLLRICQRL LPYKESLADE
1101: LLRSLQLVLK LDARVADAYC EQIAIEVSRL VKANANHIRS QAGWRTITSL LSITARHPEA SESGFDAVSF VMSEGTHLYP ANYVLCVDAA RQFAESRVGQ
1201: SERSIRALDL MGDSLEFLAK WALSAKENMG EEDFGKMSQD IGEMWLRLVQ GLRKVCLDQR EDVRNHALQS LQKCLGGVDG INLAHSMWSQ CFDKVIFTVL
1301: DDLLEIAAGS QKDYRNMEGT LLLAIKLLSK VFLQQLQELS QLSTFCKLWL GVLTRMEKYM KVKVRGKKSD KLQESVPELL KNILLVMKTK GVLLQRSALG
1401: GDSLWELTWL HVNNIAPSMR LELFPDQESS QLGDDETVSN GLSSPENTTG S
Arabidopsis Description
GNARF guanine-nucleotide exchange factor GNOM [Source:UniProtKB/Swiss-Prot;Acc:Q42510]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.