Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc04g005560.2.1 | |
| Solyc05g013040.2.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g013040.2.1 | Tomato | cytosol | 87.94 | 87.58 |
| KRH31013 | Soybean | cytosol | 71.45 | 81.7 |
| VIT_02s0012g01790.t01 | Wine grape | cytosol | 83.16 | 81.63 |
| KRG97867 | Soybean | cytosol | 81.22 | 79.57 |
| AT1G13980.1 | Thale cress | cytosol | 79.42 | 78.98 |
| CDY36422 | Canola | cytosol | 78.52 | 78.19 |
| CDX98140 | Canola | cytosol | 78.45 | 78.18 |
| Bra019694.1-P | Field mustard | cytosol | 78.38 | 78.11 |
| GSMUA_Achr6P22810_001 | Banana | golgi | 59.81 | 74.53 |
| Os03t0666100-00 | Rice | extracellular, golgi | 61.4 | 73.16 |
| GSMUA_Achr6P03140_001 | Banana | cytosol, nucleus, plastid | 40.82 | 71.83 |
| KRH15072 | Soybean | cytosol | 73.25 | 71.52 |
| KRH73064 | Soybean | cytosol | 72.63 | 71.2 |
| KRG97865 | Soybean | cytosol | 71.66 | 70.2 |
| CDY69502 | Canola | cytosol | 12.89 | 70.19 |
| Zm00001d013590_P001 | Maize | mitochondrion | 68.12 | 69.47 |
| KRH31014 | Soybean | nucleus | 70.76 | 69.31 |
| KXG37878 | Sorghum | cytosol | 67.78 | 69.31 |
| TraesCS4D01G016900.1 | Wheat | cytosol | 66.87 | 68.25 |
| TraesCS4A01G294900.1 | Wheat | cytosol | 66.87 | 68.15 |
| TraesCS4B01G018700.1 | Wheat | cytosol | 66.6 | 67.92 |
| Solyc02g088290.2.1 | Tomato | cytosol | 63.89 | 65.39 |
| Os02t0326600-01 | Rice | cytosol, plasma membrane | 45.05 | 65.26 |
| Solyc02g067010.2.1 | Tomato | cytosol | 64.66 | 64.43 |
| TraesCS5A01G361300.1 | Wheat | cytosol | 56.69 | 63.81 |
| EER91946 | Sorghum | plastid | 62.23 | 62.97 |
| HORVU4Hr1G002880.3 | Barley | cytosol | 61.95 | 62.87 |
| TraesCS5D01G370200.1 | Wheat | cytosol | 59.39 | 62.51 |
| TraesCS5B01G363900.1 | Wheat | cytosol, plasma membrane | 61.12 | 62.38 |
| Zm00001d047092_P001 | Maize | mitochondrion, plastid | 61.4 | 62.31 |
| Zm00001d029910_P001 | Maize | plastid | 61.4 | 62.13 |
| HORVU5Hr1G088970.4 | Barley | plastid | 55.37 | 60.81 |
| HORVU3Hr1G017750.4 | Barley | cytosol | 41.51 | 60.63 |
| TraesCS3A01G098600.1 | Wheat | cytosol, plastid | 57.03 | 59.34 |
| TraesCS3B01G114200.1 | Wheat | plastid | 57.24 | 58.75 |
| Solyc03g070470.1.1 | Tomato | nucleus | 39.64 | 37.34 |
| Solyc01g112350.2.1 | Tomato | extracellular, golgi, plasma membrane | 18.43 | 19.39 |
| Solyc01g091460.2.1 | Tomato | extracellular | 23.08 | 18.73 |
| Solyc01g112340.2.1 | Tomato | plastid | 4.85 | 16.75 |
| Solyc12g017830.1.1 | Tomato | plastid | 19.06 | 15.54 |
Protein Annotations
| Gene3D:1.10.1000.11 | Gene3D:1.10.220.20 | MapMan:22.3.3.1 | InterPro:ARM-type_fold | GO:GO:0003674 | GO:GO:0005086 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005794 | GO:GO:0005802 | GO:GO:0006810 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016192 | GO:GO:0032012 | GO:GO:0065009 | InterPro:IPR000904 | InterPro:IPR023394 |
| UniProt:K4BNG2 | PFAM:PF01369 | PFAM:PF12783 | PFscan:PS50190 | PANTHER:PTHR44190 | PANTHER:PTHR44190:SF1 |
| SMART:SM00222 | SUPFAM:SSF48371 | SUPFAM:SSF48425 | InterPro:Sec7_C_sf | InterPro:Sec7_N | InterPro:Sec7_dom |
| InterPro:Sec7_dom_sf | EnsemblPlantsGene:Solyc04g005560.2 | EnsemblPlants:Solyc04g005560.2.1 | UniParc:UPI00027663E9 | SEG:seg | : |
Description
No Description!
Coordinates
chr4:+:374381..379758
Molecular Weight (calculated)
161993.0 Da
IEP (calculated)
5.591
GRAVY (calculated)
-0.078
Length
1443 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGRLRIQSSI KAIEEEPEDC ETTSSNKTAI ACMVNSEVSA VLAVMRRNVR WGGRYVSGDD QLEHSLIQSL KTLRKQIFSW QHQWQTINPA LYLQPFLDVI
0101: RSDETGAPIT GVALSSVFKI LTLDFLDHNT VNVENAMHSV VDAVTSCRFE VTDPASEEVV LMKILQVLLT CMRSKASVTL SNQHVCTIVN TCFRVVHQAG
0201: SKSELLQQTA RHTMHELVRC IFSHLPEVDD MQQSIVRRGS STKNKVLDVD NEYSFNKPEN GTGTSEYDSQ PLSGTFTSSA STGLLNSVID EGMVMNDNGK
0301: DSVPNDLHLM TEPYGVPCMV EIFHFLCSLL NVVEHIGMGP RSNTTAFDED VPLFALCLIN SVIELGGPAI HSHPRLLSLV QDELFQNLMI FGLSTSPVIL
0401: STVCSIVLNL YQHLRTELKL QLEAFLSCVV LRLAQSRYGA SYQQQEVAME ALVDFCRQKS FMVEMYANLD CDITCTNVFE ELANLLSKSA FPVNSPLSAM
0501: NILALDGLIA VIQGMAERIS NGCRSQQNLI NLEDYAPFWM VECESYSDPD HWVPFVRRRK HIKRRLMIGA DHFNRDPKKG LEFLQGTYLL PEKLDPQSVA
0601: CFFRYTAGLD KNLVGDFLGN HDEFCIQVLH EFAGTFDFED MNLDIALRLF LETFRLPGES QKIARVLEAF SERYYEQSPQ ILANKDAALL LSYSLIMLNT
0701: DQHNIQVKKK MTEEDFIRNN RNINGGNDLP REYLSELYHS ICNNEIRTTP EQSAGFAEMN PSRWIDLMHK SKKTPPYIVC DSRAYLDHDM FATMSGPTIA
0801: AISVVFDHAE HEDVYKACID GFLAVAKISA CHHLEDVLDD LVVSLCKFTT LLNPSLVEEP VLAFGDDAKA RMSTVTVFTI ANEYGDFIRT GWRNILDCIL
0901: RLHKLGLLPA RVASDAADDS EAPSDTGHGK SLPNSLSSAH LQSIGTPRRS SGLMGRFSQL LSLDTEEPRS QPTEQQLAAH QRTLQTIQKC RIDSIFTESK
1001: FLLADSLLQL ARALIWAAGR PQKGSSSPED EDTAVFCLEL LIAITLNNRD RIRLLWQGVY EHIASIVHST VMPCALIEKA IFGLLRICLR LLPYKENLAD
1101: ELLRSLQLVL KLDARVADAY CEQITQEVSR LVKANATHIR SQMGWRTITL LLSITARHPE ASEAGFNALV FIMSDGAHLS PANYVLCIDA ARNFAESRVG
1201: PADRPARAVD LMAGSVASLA CWSKDTREAL AETEAVKLSQ DIGDMWLRLV QGLRKVSLDQ REVRNHALLS LQMCLKGDHE IYLPNSVWLQ FFDMVIFTML
1301: DDLIELASQK DYRNMEETLV LALKLLAKVF HQLLHELSQL TTFCKLWLGV LNRMEKCMKV KVRGKKSEKL QELVLELLKN TLTVMKSKGV LVKRSALGGD
1401: SLWELTWLHV NNIVPSLQSE VFPDNDSENV QPDPVFSETN PNE
0101: RSDETGAPIT GVALSSVFKI LTLDFLDHNT VNVENAMHSV VDAVTSCRFE VTDPASEEVV LMKILQVLLT CMRSKASVTL SNQHVCTIVN TCFRVVHQAG
0201: SKSELLQQTA RHTMHELVRC IFSHLPEVDD MQQSIVRRGS STKNKVLDVD NEYSFNKPEN GTGTSEYDSQ PLSGTFTSSA STGLLNSVID EGMVMNDNGK
0301: DSVPNDLHLM TEPYGVPCMV EIFHFLCSLL NVVEHIGMGP RSNTTAFDED VPLFALCLIN SVIELGGPAI HSHPRLLSLV QDELFQNLMI FGLSTSPVIL
0401: STVCSIVLNL YQHLRTELKL QLEAFLSCVV LRLAQSRYGA SYQQQEVAME ALVDFCRQKS FMVEMYANLD CDITCTNVFE ELANLLSKSA FPVNSPLSAM
0501: NILALDGLIA VIQGMAERIS NGCRSQQNLI NLEDYAPFWM VECESYSDPD HWVPFVRRRK HIKRRLMIGA DHFNRDPKKG LEFLQGTYLL PEKLDPQSVA
0601: CFFRYTAGLD KNLVGDFLGN HDEFCIQVLH EFAGTFDFED MNLDIALRLF LETFRLPGES QKIARVLEAF SERYYEQSPQ ILANKDAALL LSYSLIMLNT
0701: DQHNIQVKKK MTEEDFIRNN RNINGGNDLP REYLSELYHS ICNNEIRTTP EQSAGFAEMN PSRWIDLMHK SKKTPPYIVC DSRAYLDHDM FATMSGPTIA
0801: AISVVFDHAE HEDVYKACID GFLAVAKISA CHHLEDVLDD LVVSLCKFTT LLNPSLVEEP VLAFGDDAKA RMSTVTVFTI ANEYGDFIRT GWRNILDCIL
0901: RLHKLGLLPA RVASDAADDS EAPSDTGHGK SLPNSLSSAH LQSIGTPRRS SGLMGRFSQL LSLDTEEPRS QPTEQQLAAH QRTLQTIQKC RIDSIFTESK
1001: FLLADSLLQL ARALIWAAGR PQKGSSSPED EDTAVFCLEL LIAITLNNRD RIRLLWQGVY EHIASIVHST VMPCALIEKA IFGLLRICLR LLPYKENLAD
1101: ELLRSLQLVL KLDARVADAY CEQITQEVSR LVKANATHIR SQMGWRTITL LLSITARHPE ASEAGFNALV FIMSDGAHLS PANYVLCIDA ARNFAESRVG
1201: PADRPARAVD LMAGSVASLA CWSKDTREAL AETEAVKLSQ DIGDMWLRLV QGLRKVSLDQ REVRNHALLS LQMCLKGDHE IYLPNSVWLQ FFDMVIFTML
1301: DDLIELASQK DYRNMEETLV LALKLLAKVF HQLLHELSQL TTFCKLWLGV LNRMEKCMKV KVRGKKSEKL QELVLELLKN TLTVMKSKGV LVKRSALGGD
1401: SLWELTWLHV NNIVPSLQSE VFPDNDSENV QPDPVFSETN PNE
0001: MGRLKLHSGI KAIEEEPEDF ECTDSSNTTT LACMIDTEIA AVLAVMRRNV RWGGRYMSGD DQLEHSLIQS LKALRKQVFS WNQPWHTISP MLYLQPFLDV
0101: IRSDETGAPI TSIALSSVYK ILNLNVIDQN TANIEDAMHL VVDSVTSCRF EVTDPASEEV VLMKILQVLL ACMKNKASVM LSNQHVCTVV NTCFRVVHQA
0201: GMKGELLQRV ARHTMHELVR CIFSHLPDVE RTETTLVNRA GSIKQEKAGV DSDYAIVSKP VEDGNANSEY DVENSMATFA TGAQSLMDDG PVGPGSRKPA
0301: SPYDLHIMTE PYGVPSMVEI FHFLCSLLNV VEHVGMGSRS NTIAFDEDVP LFALNLINSA IELGGSSIRH HPRLLSLIQD ELFRNLMQFG LSMSPLILSM
0401: VCSIVLNLYQ HLRTELKLQL EAFFSCVILR LAQGKYGPSY QQQEVAMEAL VNFCRQKSFM VEMYANLDCD ITCSNVFEEL SNLLSKSTFP VNCPLSAMHI
0501: LALDGLIAVI QGMAERISNG LTGLDLGPVH LDEYTPFWMV KCDNYSDPNH WVSFVRRRKY IKRRLMIGAD HFNRDPKKGL EFLQGTHLLP DKLDPQSVAC
0601: FFRYTAGLDK NLVGDFLGNH DEFCVQVLNE FAGTFDFQYM NLDTALRLFL ETFRLPGESQ KIQRVLEAFS ERYYMQSPEI LANKDAALVL SYSIIMLNTD
0701: QHNVQVKKKM TEEDFIRNNR HINGGNDLPR EFLSELFHSI CNNEIRTTPE QGAGFPEMTP SRWIDLMHKS KKTAPYILAD SRAYLDHDMF AIMSGPTIAA
0801: ISVVFDHAEH EDVYQTCIDG FLAIAKISAC HHLEDVLDDL VVSLCKFTTL LNPSSVDEPV LAFGDDAKAR MATITIFTIA NKYGDYIRTG WRNILDCILR
0901: LHKLGLLPAR VASDAADESE HSSEQGQGKP LANSLSSAHL QSMGTPRRSS GLMGRFSQLL SLDTEEPRSQ PTEQQLAAHQ RTLQTIQKCH IDSIFTESKF
1001: LQAESLLQLA RALIWAAGRP QKGTSSPEDE DTAVFCLELL IAITLNNRDR IVLLWQGVYE HIATIAQSTV MPCNLVDKAI FGLLRICQRL LPYKESLADE
1101: LLRSLQLVLK LDARVADAYC EQIAIEVSRL VKANANHIRS QAGWRTITSL LSITARHPEA SESGFDAVSF VMSEGTHLYP ANYVLCVDAA RQFAESRVGQ
1201: SERSIRALDL MGDSLEFLAK WALSAKENMG EEDFGKMSQD IGEMWLRLVQ GLRKVCLDQR EDVRNHALQS LQKCLGGVDG INLAHSMWSQ CFDKVIFTVL
1301: DDLLEIAAGS QKDYRNMEGT LLLAIKLLSK VFLQQLQELS QLSTFCKLWL GVLTRMEKYM KVKVRGKKSD KLQESVPELL KNILLVMKTK GVLLQRSALG
1401: GDSLWELTWL HVNNIAPSMR LELFPDQESS QLGDDETVSN GLSSPENTTG S
0101: IRSDETGAPI TSIALSSVYK ILNLNVIDQN TANIEDAMHL VVDSVTSCRF EVTDPASEEV VLMKILQVLL ACMKNKASVM LSNQHVCTVV NTCFRVVHQA
0201: GMKGELLQRV ARHTMHELVR CIFSHLPDVE RTETTLVNRA GSIKQEKAGV DSDYAIVSKP VEDGNANSEY DVENSMATFA TGAQSLMDDG PVGPGSRKPA
0301: SPYDLHIMTE PYGVPSMVEI FHFLCSLLNV VEHVGMGSRS NTIAFDEDVP LFALNLINSA IELGGSSIRH HPRLLSLIQD ELFRNLMQFG LSMSPLILSM
0401: VCSIVLNLYQ HLRTELKLQL EAFFSCVILR LAQGKYGPSY QQQEVAMEAL VNFCRQKSFM VEMYANLDCD ITCSNVFEEL SNLLSKSTFP VNCPLSAMHI
0501: LALDGLIAVI QGMAERISNG LTGLDLGPVH LDEYTPFWMV KCDNYSDPNH WVSFVRRRKY IKRRLMIGAD HFNRDPKKGL EFLQGTHLLP DKLDPQSVAC
0601: FFRYTAGLDK NLVGDFLGNH DEFCVQVLNE FAGTFDFQYM NLDTALRLFL ETFRLPGESQ KIQRVLEAFS ERYYMQSPEI LANKDAALVL SYSIIMLNTD
0701: QHNVQVKKKM TEEDFIRNNR HINGGNDLPR EFLSELFHSI CNNEIRTTPE QGAGFPEMTP SRWIDLMHKS KKTAPYILAD SRAYLDHDMF AIMSGPTIAA
0801: ISVVFDHAEH EDVYQTCIDG FLAIAKISAC HHLEDVLDDL VVSLCKFTTL LNPSSVDEPV LAFGDDAKAR MATITIFTIA NKYGDYIRTG WRNILDCILR
0901: LHKLGLLPAR VASDAADESE HSSEQGQGKP LANSLSSAHL QSMGTPRRSS GLMGRFSQLL SLDTEEPRSQ PTEQQLAAHQ RTLQTIQKCH IDSIFTESKF
1001: LQAESLLQLA RALIWAAGRP QKGTSSPEDE DTAVFCLELL IAITLNNRDR IVLLWQGVYE HIATIAQSTV MPCNLVDKAI FGLLRICQRL LPYKESLADE
1101: LLRSLQLVLK LDARVADAYC EQIAIEVSRL VKANANHIRS QAGWRTITSL LSITARHPEA SESGFDAVSF VMSEGTHLYP ANYVLCVDAA RQFAESRVGQ
1201: SERSIRALDL MGDSLEFLAK WALSAKENMG EEDFGKMSQD IGEMWLRLVQ GLRKVCLDQR EDVRNHALQS LQKCLGGVDG INLAHSMWSQ CFDKVIFTVL
1301: DDLLEIAAGS QKDYRNMEGT LLLAIKLLSK VFLQQLQELS QLSTFCKLWL GVLTRMEKYM KVKVRGKKSD KLQESVPELL KNILLVMKTK GVLLQRSALG
1401: GDSLWELTWL HVNNIAPSMR LELFPDQESS QLGDDETVSN GLSSPENTTG S
Arabidopsis Description
GNARF guanine-nucleotide exchange factor GNOM [Source:UniProtKB/Swiss-Prot;Acc:Q42510]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.