Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc04g005560.2.1 | |
| Solyc05g013040.2.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400072858 | Potato | cytosol | 98.34 | 98.34 |
| Solyc04g005560.2.1 | Tomato | nucleus | 87.58 | 87.94 |
| KRH31013 | Soybean | cytosol | 71.77 | 82.41 |
| VIT_02s0012g01790.t01 | Wine grape | cytosol | 83.23 | 82.04 |
| KRG97867 | Soybean | cytosol | 81.44 | 80.11 |
| AT1G13980.1 | Thale cress | cytosol | 80.12 | 80.01 |
| CDY36422 | Canola | cytosol | 79.09 | 79.09 |
| CDX98140 | Canola | cytosol | 79.02 | 79.07 |
| Bra019694.1-P | Field mustard | cytosol | 78.95 | 79.01 |
| GSMUA_Achr6P22810_001 | Banana | golgi | 59.9 | 74.96 |
| GSMUA_Achr6P03140_001 | Banana | cytosol, nucleus, plastid | 41.68 | 73.66 |
| Os03t0666100-00 | Rice | extracellular, golgi | 61.15 | 73.16 |
| KRH15072 | Soybean | cytosol | 73.22 | 71.79 |
| KRH73064 | Soybean | cytosol | 72.81 | 71.67 |
| KRG97865 | Soybean | cytosol | 71.5 | 70.33 |
| Zm00001d013590_P001 | Maize | mitochondrion | 67.91 | 69.54 |
| CDY69502 | Canola | cytosol | 12.7 | 69.43 |
| KXG37878 | Sorghum | cytosol | 67.36 | 69.17 |
| KRH31014 | Soybean | nucleus | 70.26 | 69.11 |
| TraesCS4D01G016900.1 | Wheat | cytosol | 66.46 | 68.1 |
| TraesCS4B01G018700.1 | Wheat | cytosol | 66.25 | 67.84 |
| TraesCS4A01G294900.1 | Wheat | cytosol | 66.11 | 67.66 |
| Os02t0326600-01 | Rice | cytosol, plasma membrane | 45.0 | 65.46 |
| Solyc02g088290.2.1 | Tomato | cytosol | 63.7 | 65.46 |
| TraesCS5A01G361300.1 | Wheat | cytosol | 57.14 | 64.59 |
| Solyc02g067010.2.1 | Tomato | cytosol | 63.42 | 63.47 |
| TraesCS5D01G370200.1 | Wheat | cytosol | 59.83 | 63.24 |
| EER91946 | Sorghum | plastid | 62.11 | 63.11 |
| TraesCS5B01G363900.1 | Wheat | cytosol, plasma membrane | 61.28 | 62.8 |
| HORVU4Hr1G002880.3 | Barley | cytosol | 61.42 | 62.59 |
| Zm00001d047092_P001 | Maize | mitochondrion, plastid | 61.42 | 62.59 |
| Zm00001d029910_P001 | Maize | plastid | 61.56 | 62.55 |
| HORVU5Hr1G088970.4 | Barley | plastid | 55.62 | 61.34 |
| HORVU3Hr1G017750.4 | Barley | cytosol | 41.75 | 61.23 |
| TraesCS3A01G098600.1 | Wheat | cytosol, plastid | 57.21 | 59.77 |
| TraesCS3B01G114200.1 | Wheat | plastid | 57.56 | 59.32 |
| Solyc03g070470.1.1 | Tomato | nucleus | 38.99 | 36.88 |
| Solyc01g112350.2.1 | Tomato | extracellular, golgi, plasma membrane | 18.01 | 19.02 |
| Solyc01g091460.2.1 | Tomato | extracellular | 23.26 | 18.95 |
| Solyc01g112340.2.1 | Tomato | plastid | 4.97 | 17.22 |
| Solyc12g017830.1.1 | Tomato | plastid | 19.25 | 15.76 |
Protein Annotations
| Gene3D:1.10.1000.11 | Gene3D:1.10.220.20 | MapMan:22.3.3.1 | InterPro:ARM-type_fold | GO:GO:0003674 | GO:GO:0005086 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005794 | GO:GO:0005802 | GO:GO:0006810 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016192 | GO:GO:0032012 | GO:GO:0065009 | InterPro:IPR000904 | InterPro:IPR023394 |
| UniProt:K4BY25 | PFAM:PF01369 | PFAM:PF12783 | PFscan:PS50190 | PANTHER:PTHR44190 | PANTHER:PTHR44190:SF1 |
| SMART:SM00222 | SUPFAM:SSF48371 | SUPFAM:SSF48425 | InterPro:Sec7_C_sf | InterPro:Sec7_N | InterPro:Sec7_dom |
| InterPro:Sec7_dom_sf | EnsemblPlantsGene:Solyc05g013040.2 | EnsemblPlants:Solyc05g013040.2.1 | UniParc:UPI0002765AC1 | SEG:seg | : |
Description
No Description!
Coordinates
chr5:+:6150503..6155924
Molecular Weight (calculated)
161779.0 Da
IEP (calculated)
5.575
GRAVY (calculated)
-0.045
Length
1449 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGRLRPQSSI KAIEEEPEDC ETTSSNKTSI ACMINSEVSA VLAVMRRNVR WGGRYVSGDD QLEHSLIQSL KTLRKQMFSW QHSGQTISPA LCLQPFLDVI
0101: RSDETGAPIT GVALSSVFKI LTLDILDLDA VNIEDAMHSV VDAVTSCRFE VTDPASEEVV LMKILQVLLA CMRSKTSVVL SNQHVCTIVN TCFRVVHQAG
0201: TKSEVLQRIA RHTMHELVRC IFAHLPEVDN IQHSIVRQHG SSKNEVAGIV NEYSLSSKSE NGSGPSEYDS LPPSGGFTSA STGLLSSVTE EGMVMGDNGK
0301: DSVPYDLHLM TEPYGVPCMV EIFHFLCSLL NVVEHVGMGP RANTMAFDED VPLFALGLIN SAIELGGPAI CSHPRLLSLV QDELFRNLMQ FGLSMSPLIL
0401: SMVCSIVLNL YQHLGTELKL QLEAFFSCVV LRLAQSRYGA SYQQQEVAME ALVDFCRQKS FMVEMYANLD CDITCSNIFE ELANLLSKSA FPVNSPLSSM
0501: HILALDGLIA VIQGMAERIG NGSYSSEYTP INLEEYSPFW MVKCENYSDP DHWVPFVRRR KYIKRRLMIG ADHFNRDPKK GLEFLQGTHL LPEKLDPQSV
0601: ACFFRFTAGL DKNLVGDFLG NHDEFCVQVL HEFAGTFDFQ DMNLDTALRL FLETFRLPGE SQKIARVLEA FSERYYEQSP QILANKDAAL LLSYSIIMLN
0701: TDQHNVQVKK KMTEEDFIRN NRHINGGNDL PRDFLSELYH SICNNEIRTT PEQGAGFAEM NPSRWIDLMH KSKKTSPYIM CDSKAYLDHD MFAIMSGPTI
0801: AAISVVFDHA EHEDVYQTCI DGFLAVAKIS ACHHLEDVLD DLVVSLCKFT TLLNPSLVEE PVLAFGDDAK ARKATVTVFT IANKCGDFIR TGWRNILDCI
0901: LRLHKLGLLP ARVASDAADD SEASSDPGHG KPLPNSLTAA HMQSLGTPRR SSGLMGRFSQ LLSIDTEEPR SQPTEQQLAA HQRTLQTIQK CQIDTIFTES
1001: KFLLADSLLQ LARALIWAAG RPQKGSSSPE DEDTAVFCLE LLIAITLNNR DRIALLWQGV YEHIAHIVHS TIMPCALIEK AVFGLLRICQ RLLPYKENLA
1101: DDLLRSLQLV TKLDARVTDA YCEQITQEVS RLVRANASHI RSQMGWRTIT QLLSITARHP EASEAGFDVL GFIMSDGSHL SPANFVLCID VARNFAESRV
1201: GPADRPIRAV DLMTGSAACL AIWSKDTREA MAEAEALKLS QDIGEMWLRL VQGLRKVCLD QREVRNHALS SLQTCLTGVD EMYLSHGLWL QCFDIVIFTM
1301: LDDLIELTSQ KDYRNMEETL ILALKLLTKV FLQLLHELSQ LTTFCKLWLG VLNRMEKYMK VKVRGKKSEK LQELVPELLK NTLVVMKSKG VLVQRGALGG
1401: DSLWELTWLH VNNIVPSLQA EVFPENELGH VESDQTDARG AAYDVADPS
0101: RSDETGAPIT GVALSSVFKI LTLDILDLDA VNIEDAMHSV VDAVTSCRFE VTDPASEEVV LMKILQVLLA CMRSKTSVVL SNQHVCTIVN TCFRVVHQAG
0201: TKSEVLQRIA RHTMHELVRC IFAHLPEVDN IQHSIVRQHG SSKNEVAGIV NEYSLSSKSE NGSGPSEYDS LPPSGGFTSA STGLLSSVTE EGMVMGDNGK
0301: DSVPYDLHLM TEPYGVPCMV EIFHFLCSLL NVVEHVGMGP RANTMAFDED VPLFALGLIN SAIELGGPAI CSHPRLLSLV QDELFRNLMQ FGLSMSPLIL
0401: SMVCSIVLNL YQHLGTELKL QLEAFFSCVV LRLAQSRYGA SYQQQEVAME ALVDFCRQKS FMVEMYANLD CDITCSNIFE ELANLLSKSA FPVNSPLSSM
0501: HILALDGLIA VIQGMAERIG NGSYSSEYTP INLEEYSPFW MVKCENYSDP DHWVPFVRRR KYIKRRLMIG ADHFNRDPKK GLEFLQGTHL LPEKLDPQSV
0601: ACFFRFTAGL DKNLVGDFLG NHDEFCVQVL HEFAGTFDFQ DMNLDTALRL FLETFRLPGE SQKIARVLEA FSERYYEQSP QILANKDAAL LLSYSIIMLN
0701: TDQHNVQVKK KMTEEDFIRN NRHINGGNDL PRDFLSELYH SICNNEIRTT PEQGAGFAEM NPSRWIDLMH KSKKTSPYIM CDSKAYLDHD MFAIMSGPTI
0801: AAISVVFDHA EHEDVYQTCI DGFLAVAKIS ACHHLEDVLD DLVVSLCKFT TLLNPSLVEE PVLAFGDDAK ARKATVTVFT IANKCGDFIR TGWRNILDCI
0901: LRLHKLGLLP ARVASDAADD SEASSDPGHG KPLPNSLTAA HMQSLGTPRR SSGLMGRFSQ LLSIDTEEPR SQPTEQQLAA HQRTLQTIQK CQIDTIFTES
1001: KFLLADSLLQ LARALIWAAG RPQKGSSSPE DEDTAVFCLE LLIAITLNNR DRIALLWQGV YEHIAHIVHS TIMPCALIEK AVFGLLRICQ RLLPYKENLA
1101: DDLLRSLQLV TKLDARVTDA YCEQITQEVS RLVRANASHI RSQMGWRTIT QLLSITARHP EASEAGFDVL GFIMSDGSHL SPANFVLCID VARNFAESRV
1201: GPADRPIRAV DLMTGSAACL AIWSKDTREA MAEAEALKLS QDIGEMWLRL VQGLRKVCLD QREVRNHALS SLQTCLTGVD EMYLSHGLWL QCFDIVIFTM
1301: LDDLIELTSQ KDYRNMEETL ILALKLLTKV FLQLLHELSQ LTTFCKLWLG VLNRMEKYMK VKVRGKKSEK LQELVPELLK NTLVVMKSKG VLVQRGALGG
1401: DSLWELTWLH VNNIVPSLQA EVFPENELGH VESDQTDARG AAYDVADPS
0001: MGRLKLHSGI KAIEEEPEDF ECTDSSNTTT LACMIDTEIA AVLAVMRRNV RWGGRYMSGD DQLEHSLIQS LKALRKQVFS WNQPWHTISP MLYLQPFLDV
0101: IRSDETGAPI TSIALSSVYK ILNLNVIDQN TANIEDAMHL VVDSVTSCRF EVTDPASEEV VLMKILQVLL ACMKNKASVM LSNQHVCTVV NTCFRVVHQA
0201: GMKGELLQRV ARHTMHELVR CIFSHLPDVE RTETTLVNRA GSIKQEKAGV DSDYAIVSKP VEDGNANSEY DVENSMATFA TGAQSLMDDG PVGPGSRKPA
0301: SPYDLHIMTE PYGVPSMVEI FHFLCSLLNV VEHVGMGSRS NTIAFDEDVP LFALNLINSA IELGGSSIRH HPRLLSLIQD ELFRNLMQFG LSMSPLILSM
0401: VCSIVLNLYQ HLRTELKLQL EAFFSCVILR LAQGKYGPSY QQQEVAMEAL VNFCRQKSFM VEMYANLDCD ITCSNVFEEL SNLLSKSTFP VNCPLSAMHI
0501: LALDGLIAVI QGMAERISNG LTGLDLGPVH LDEYTPFWMV KCDNYSDPNH WVSFVRRRKY IKRRLMIGAD HFNRDPKKGL EFLQGTHLLP DKLDPQSVAC
0601: FFRYTAGLDK NLVGDFLGNH DEFCVQVLNE FAGTFDFQYM NLDTALRLFL ETFRLPGESQ KIQRVLEAFS ERYYMQSPEI LANKDAALVL SYSIIMLNTD
0701: QHNVQVKKKM TEEDFIRNNR HINGGNDLPR EFLSELFHSI CNNEIRTTPE QGAGFPEMTP SRWIDLMHKS KKTAPYILAD SRAYLDHDMF AIMSGPTIAA
0801: ISVVFDHAEH EDVYQTCIDG FLAIAKISAC HHLEDVLDDL VVSLCKFTTL LNPSSVDEPV LAFGDDAKAR MATITIFTIA NKYGDYIRTG WRNILDCILR
0901: LHKLGLLPAR VASDAADESE HSSEQGQGKP LANSLSSAHL QSMGTPRRSS GLMGRFSQLL SLDTEEPRSQ PTEQQLAAHQ RTLQTIQKCH IDSIFTESKF
1001: LQAESLLQLA RALIWAAGRP QKGTSSPEDE DTAVFCLELL IAITLNNRDR IVLLWQGVYE HIATIAQSTV MPCNLVDKAI FGLLRICQRL LPYKESLADE
1101: LLRSLQLVLK LDARVADAYC EQIAIEVSRL VKANANHIRS QAGWRTITSL LSITARHPEA SESGFDAVSF VMSEGTHLYP ANYVLCVDAA RQFAESRVGQ
1201: SERSIRALDL MGDSLEFLAK WALSAKENMG EEDFGKMSQD IGEMWLRLVQ GLRKVCLDQR EDVRNHALQS LQKCLGGVDG INLAHSMWSQ CFDKVIFTVL
1301: DDLLEIAAGS QKDYRNMEGT LLLAIKLLSK VFLQQLQELS QLSTFCKLWL GVLTRMEKYM KVKVRGKKSD KLQESVPELL KNILLVMKTK GVLLQRSALG
1401: GDSLWELTWL HVNNIAPSMR LELFPDQESS QLGDDETVSN GLSSPENTTG S
0101: IRSDETGAPI TSIALSSVYK ILNLNVIDQN TANIEDAMHL VVDSVTSCRF EVTDPASEEV VLMKILQVLL ACMKNKASVM LSNQHVCTVV NTCFRVVHQA
0201: GMKGELLQRV ARHTMHELVR CIFSHLPDVE RTETTLVNRA GSIKQEKAGV DSDYAIVSKP VEDGNANSEY DVENSMATFA TGAQSLMDDG PVGPGSRKPA
0301: SPYDLHIMTE PYGVPSMVEI FHFLCSLLNV VEHVGMGSRS NTIAFDEDVP LFALNLINSA IELGGSSIRH HPRLLSLIQD ELFRNLMQFG LSMSPLILSM
0401: VCSIVLNLYQ HLRTELKLQL EAFFSCVILR LAQGKYGPSY QQQEVAMEAL VNFCRQKSFM VEMYANLDCD ITCSNVFEEL SNLLSKSTFP VNCPLSAMHI
0501: LALDGLIAVI QGMAERISNG LTGLDLGPVH LDEYTPFWMV KCDNYSDPNH WVSFVRRRKY IKRRLMIGAD HFNRDPKKGL EFLQGTHLLP DKLDPQSVAC
0601: FFRYTAGLDK NLVGDFLGNH DEFCVQVLNE FAGTFDFQYM NLDTALRLFL ETFRLPGESQ KIQRVLEAFS ERYYMQSPEI LANKDAALVL SYSIIMLNTD
0701: QHNVQVKKKM TEEDFIRNNR HINGGNDLPR EFLSELFHSI CNNEIRTTPE QGAGFPEMTP SRWIDLMHKS KKTAPYILAD SRAYLDHDMF AIMSGPTIAA
0801: ISVVFDHAEH EDVYQTCIDG FLAIAKISAC HHLEDVLDDL VVSLCKFTTL LNPSSVDEPV LAFGDDAKAR MATITIFTIA NKYGDYIRTG WRNILDCILR
0901: LHKLGLLPAR VASDAADESE HSSEQGQGKP LANSLSSAHL QSMGTPRRSS GLMGRFSQLL SLDTEEPRSQ PTEQQLAAHQ RTLQTIQKCH IDSIFTESKF
1001: LQAESLLQLA RALIWAAGRP QKGTSSPEDE DTAVFCLELL IAITLNNRDR IVLLWQGVYE HIATIAQSTV MPCNLVDKAI FGLLRICQRL LPYKESLADE
1101: LLRSLQLVLK LDARVADAYC EQIAIEVSRL VKANANHIRS QAGWRTITSL LSITARHPEA SESGFDAVSF VMSEGTHLYP ANYVLCVDAA RQFAESRVGQ
1201: SERSIRALDL MGDSLEFLAK WALSAKENMG EEDFGKMSQD IGEMWLRLVQ GLRKVCLDQR EDVRNHALQS LQKCLGGVDG INLAHSMWSQ CFDKVIFTVL
1301: DDLLEIAAGS QKDYRNMEGT LLLAIKLLSK VFLQQLQELS QLSTFCKLWL GVLTRMEKYM KVKVRGKKSD KLQESVPELL KNILLVMKTK GVLLQRSALG
1401: GDSLWELTWL HVNNIAPSMR LELFPDQESS QLGDDETVSN GLSSPENTTG S
Arabidopsis Description
GNARF guanine-nucleotide exchange factor GNOM [Source:UniProtKB/Swiss-Prot;Acc:Q42510]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.