Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr6P03140_001 | |
| GSMUA_Achr6P22810_001 | |
| GSMUA_Achr7P04880_001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY69502 | Canola | cytosol | 16.83 | 52.08 |
| GSMUA_Achr6P22810_001 | Banana | golgi | 65.0 | 46.03 |
| VIT_02s0012g01790.t01 | Wine grape | cytosol | 75.24 | 41.97 |
| PGSC0003DMT400072858 | Potato | cytosol | 73.78 | 41.75 |
| Solyc05g013040.2.1 | Tomato | cytosol | 73.66 | 41.68 |
| AT1G13980.1 | Thale cress | cytosol | 73.41 | 41.49 |
| KRG97867 | Soybean | cytosol | 74.39 | 41.41 |
| Solyc04g005560.2.1 | Tomato | nucleus | 71.83 | 40.82 |
| Bra019694.1-P | Field mustard | cytosol | 71.95 | 40.75 |
| CDX98140 | Canola | cytosol | 71.95 | 40.75 |
| CDY36422 | Canola | cytosol | 71.83 | 40.65 |
| KRH31013 | Soybean | cytosol | 62.44 | 40.57 |
| Zm00001d013590_P001 | Maize | mitochondrion | 68.9 | 39.93 |
| KXG37878 | Sorghum | cytosol | 68.41 | 39.76 |
| Os03t0666100-00 | Rice | extracellular, golgi | 57.8 | 39.14 |
| KRH73064 | Soybean | cytosol | 69.76 | 38.86 |
| KRH15072 | Soybean | cytosol | 69.88 | 38.77 |
| KRG97865 | Soybean | cytosol | 68.41 | 38.09 |
| TraesCS4D01G016900.1 | Wheat | cytosol | 65.61 | 38.05 |
| TraesCS4A01G294900.1 | Wheat | cytosol | 65.49 | 37.92 |
| KRH31014 | Soybean | nucleus | 67.93 | 37.81 |
| TraesCS4B01G018700.1 | Wheat | cytosol | 65.0 | 37.67 |
| EER91946 | Sorghum | plastid | 62.93 | 36.19 |
| Zm00001d029910_P001 | Maize | plastid | 62.2 | 35.76 |
| Zm00001d047092_P001 | Maize | mitochondrion, plastid | 61.95 | 35.72 |
| TraesCS5B01G363900.1 | Wheat | cytosol, plasma membrane | 61.34 | 35.57 |
| TraesCS5A01G361300.1 | Wheat | cytosol | 55.61 | 35.57 |
| TraesCS5D01G370200.1 | Wheat | cytosol | 58.9 | 35.23 |
| TraesCS3A01G098600.1 | Wheat | cytosol, plastid | 57.93 | 34.25 |
| TraesCS3B01G114200.1 | Wheat | plastid | 57.68 | 33.64 |
| HORVU4Hr1G002880.3 | Barley | cytosol | 57.32 | 33.05 |
| HORVU5Hr1G088970.4 | Barley | plastid | 52.8 | 32.95 |
| GSMUA_Achr1P23070_001 | Banana | cytosol, nucleus, peroxisome | 39.88 | 32.12 |
| Os02t0326600-01 | Rice | cytosol, plasma membrane | 34.76 | 28.61 |
| HORVU3Hr1G017750.4 | Barley | cytosol | 31.34 | 26.01 |
| GSMUA_Achr1P09290_001 | Banana | mitochondrion | 20.24 | 9.98 |
| GSMUA_Achr5P18830_001 | Banana | cytosol | 20.61 | 9.87 |
| GSMUA_Achr8P19420_001 | Banana | cytosol | 20.85 | 9.82 |
| GSMUA_Achr2P14140_001 | Banana | cytosol, extracellular, nucleus | 18.29 | 8.52 |
| GSMUA_Achr4P27650_001 | Banana | cytosol, extracellular, plastid | 18.17 | 8.3 |
| GSMUA_Achr8P34520_001 | Banana | cytosol | 0.85 | 3.14 |
Protein Annotations
| Gene3D:1.10.1000.11 | Gene3D:1.10.220.20 | MapMan:22.3.3.1 | GO:GO:0003674 | GO:GO:0005086 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0032012 |
| GO:GO:0065009 | EnsemblPlantsGene:GSMUA_Achr6G03140_001 | EnsemblPlants:GSMUA_Achr6P03140_001 | EnsemblPlants:GSMUA_Achr6T03140_001 | InterPro:IPR000904 | InterPro:IPR023394 |
| UniProt:M0T3R2 | PFAM:PF01369 | PFAM:PF12783 | PFscan:PS50190 | PANTHER:PTHR44190 | PANTHER:PTHR44190:SF1 |
| SMART:SM00222 | SUPFAM:SSF48425 | InterPro:Sec7_C_sf | InterPro:Sec7_N | InterPro:Sec7_dom | InterPro:Sec7_dom_sf |
| UniParc:UPI000294BBBD | SEG:seg | : | : | : | : |
Description
Pattern formation protein EMB30 [Source:GMGC_GENE;Acc:GSMUA_Achr6G03140_001]
Coordinates
chr6:-:2144746..2152048
Molecular Weight (calculated)
93042.2 Da
IEP (calculated)
6.716
GRAVY (calculated)
-0.073
Length
820 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRPRLQNSA INPIEEESPD AAEDGSLPPL PPSGGPAAAA DLSCVICSEV SAVLAVMRRN VRWGGRYASA ADDHHLEHSL VQSLKSLRRQ VFSWGDARRP
101: WCTIEPSAFL RPFVDVILTL DLLEPGSGTG VEAGMHLVVE AVTSCRFEVI DPASEETVLM KILQVMLAIM RSQASIMLSN QHVCTIFNTC FRIVHQAGTK
201: GELLQRFSRH TMHELVRCIF SHLPHVEDGD DNPGSEAENG VRTMVEPYGI SCMVEIFHFL CSLLNVADHI GMSPATNQIA FDEDMPLFAL GMINSAIELG
301: GPSISKHPKL LSLIQDELFR NLMQFGLSMS PLILSMVCSI VLNLYRHLRT KLKLQLEAFF SCVILRLAQS RYGASYHQQE VAMEALVDFC RQKTFMAEMY
401: ANLDCDITCS NMFEELANLL SRSAFPINCP LSSMHVLALD GLIALEEYSP FWTVKCANYS DPEHWVKFVR RRKYIKRRLM IGADHFNRDP KKGLEFLQGT
501: HLLPEKLDPQ SFCVQVLHEF AWTFDFQDMN LDTALRLFLE TFRLPGESQK IQRVLEAFSE RYYEQSPQIL VDKDAALVSH NCCYLVTAFG DDIKARLATE
601: TVFSIANRYG DCIRTGWRNI LDCILRLHKL GLLPALLKLD ARVADAYCPE TDKISEGIRE MWLRLVQALR KICLDQREEK DYRNMEGTLL HAMKLLSKVF
701: LQQWQDLFGL SSFCKLWLGV LSRLEKYMKV KVRGKKSDKL QELIPELLKN TLLMMKSKGI LAKRSTIGGD SLWELTWLHV NNIAPSLQSE VFPGQEMEQL
801: HSGKTYPSLN HHMNNEMRET
101: WCTIEPSAFL RPFVDVILTL DLLEPGSGTG VEAGMHLVVE AVTSCRFEVI DPASEETVLM KILQVMLAIM RSQASIMLSN QHVCTIFNTC FRIVHQAGTK
201: GELLQRFSRH TMHELVRCIF SHLPHVEDGD DNPGSEAENG VRTMVEPYGI SCMVEIFHFL CSLLNVADHI GMSPATNQIA FDEDMPLFAL GMINSAIELG
301: GPSISKHPKL LSLIQDELFR NLMQFGLSMS PLILSMVCSI VLNLYRHLRT KLKLQLEAFF SCVILRLAQS RYGASYHQQE VAMEALVDFC RQKTFMAEMY
401: ANLDCDITCS NMFEELANLL SRSAFPINCP LSSMHVLALD GLIALEEYSP FWTVKCANYS DPEHWVKFVR RRKYIKRRLM IGADHFNRDP KKGLEFLQGT
501: HLLPEKLDPQ SFCVQVLHEF AWTFDFQDMN LDTALRLFLE TFRLPGESQK IQRVLEAFSE RYYEQSPQIL VDKDAALVSH NCCYLVTAFG DDIKARLATE
601: TVFSIANRYG DCIRTGWRNI LDCILRLHKL GLLPALLKLD ARVADAYCPE TDKISEGIRE MWLRLVQALR KICLDQREEK DYRNMEGTLL HAMKLLSKVF
701: LQQWQDLFGL SSFCKLWLGV LSRLEKYMKV KVRGKKSDKL QELIPELLKN TLLMMKSKGI LAKRSTIGGD SLWELTWLHV NNIAPSLQSE VFPGQEMEQL
801: HSGKTYPSLN HHMNNEMRET
0001: MGRLKLHSGI KAIEEEPEDF ECTDSSNTTT LACMIDTEIA AVLAVMRRNV RWGGRYMSGD DQLEHSLIQS LKALRKQVFS WNQPWHTISP MLYLQPFLDV
0101: IRSDETGAPI TSIALSSVYK ILNLNVIDQN TANIEDAMHL VVDSVTSCRF EVTDPASEEV VLMKILQVLL ACMKNKASVM LSNQHVCTVV NTCFRVVHQA
0201: GMKGELLQRV ARHTMHELVR CIFSHLPDVE RTETTLVNRA GSIKQEKAGV DSDYAIVSKP VEDGNANSEY DVENSMATFA TGAQSLMDDG PVGPGSRKPA
0301: SPYDLHIMTE PYGVPSMVEI FHFLCSLLNV VEHVGMGSRS NTIAFDEDVP LFALNLINSA IELGGSSIRH HPRLLSLIQD ELFRNLMQFG LSMSPLILSM
0401: VCSIVLNLYQ HLRTELKLQL EAFFSCVILR LAQGKYGPSY QQQEVAMEAL VNFCRQKSFM VEMYANLDCD ITCSNVFEEL SNLLSKSTFP VNCPLSAMHI
0501: LALDGLIAVI QGMAERISNG LTGLDLGPVH LDEYTPFWMV KCDNYSDPNH WVSFVRRRKY IKRRLMIGAD HFNRDPKKGL EFLQGTHLLP DKLDPQSVAC
0601: FFRYTAGLDK NLVGDFLGNH DEFCVQVLNE FAGTFDFQYM NLDTALRLFL ETFRLPGESQ KIQRVLEAFS ERYYMQSPEI LANKDAALVL SYSIIMLNTD
0701: QHNVQVKKKM TEEDFIRNNR HINGGNDLPR EFLSELFHSI CNNEIRTTPE QGAGFPEMTP SRWIDLMHKS KKTAPYILAD SRAYLDHDMF AIMSGPTIAA
0801: ISVVFDHAEH EDVYQTCIDG FLAIAKISAC HHLEDVLDDL VVSLCKFTTL LNPSSVDEPV LAFGDDAKAR MATITIFTIA NKYGDYIRTG WRNILDCILR
0901: LHKLGLLPAR VASDAADESE HSSEQGQGKP LANSLSSAHL QSMGTPRRSS GLMGRFSQLL SLDTEEPRSQ PTEQQLAAHQ RTLQTIQKCH IDSIFTESKF
1001: LQAESLLQLA RALIWAAGRP QKGTSSPEDE DTAVFCLELL IAITLNNRDR IVLLWQGVYE HIATIAQSTV MPCNLVDKAI FGLLRICQRL LPYKESLADE
1101: LLRSLQLVLK LDARVADAYC EQIAIEVSRL VKANANHIRS QAGWRTITSL LSITARHPEA SESGFDAVSF VMSEGTHLYP ANYVLCVDAA RQFAESRVGQ
1201: SERSIRALDL MGDSLEFLAK WALSAKENMG EEDFGKMSQD IGEMWLRLVQ GLRKVCLDQR EDVRNHALQS LQKCLGGVDG INLAHSMWSQ CFDKVIFTVL
1301: DDLLEIAAGS QKDYRNMEGT LLLAIKLLSK VFLQQLQELS QLSTFCKLWL GVLTRMEKYM KVKVRGKKSD KLQESVPELL KNILLVMKTK GVLLQRSALG
1401: GDSLWELTWL HVNNIAPSMR LELFPDQESS QLGDDETVSN GLSSPENTTG S
0101: IRSDETGAPI TSIALSSVYK ILNLNVIDQN TANIEDAMHL VVDSVTSCRF EVTDPASEEV VLMKILQVLL ACMKNKASVM LSNQHVCTVV NTCFRVVHQA
0201: GMKGELLQRV ARHTMHELVR CIFSHLPDVE RTETTLVNRA GSIKQEKAGV DSDYAIVSKP VEDGNANSEY DVENSMATFA TGAQSLMDDG PVGPGSRKPA
0301: SPYDLHIMTE PYGVPSMVEI FHFLCSLLNV VEHVGMGSRS NTIAFDEDVP LFALNLINSA IELGGSSIRH HPRLLSLIQD ELFRNLMQFG LSMSPLILSM
0401: VCSIVLNLYQ HLRTELKLQL EAFFSCVILR LAQGKYGPSY QQQEVAMEAL VNFCRQKSFM VEMYANLDCD ITCSNVFEEL SNLLSKSTFP VNCPLSAMHI
0501: LALDGLIAVI QGMAERISNG LTGLDLGPVH LDEYTPFWMV KCDNYSDPNH WVSFVRRRKY IKRRLMIGAD HFNRDPKKGL EFLQGTHLLP DKLDPQSVAC
0601: FFRYTAGLDK NLVGDFLGNH DEFCVQVLNE FAGTFDFQYM NLDTALRLFL ETFRLPGESQ KIQRVLEAFS ERYYMQSPEI LANKDAALVL SYSIIMLNTD
0701: QHNVQVKKKM TEEDFIRNNR HINGGNDLPR EFLSELFHSI CNNEIRTTPE QGAGFPEMTP SRWIDLMHKS KKTAPYILAD SRAYLDHDMF AIMSGPTIAA
0801: ISVVFDHAEH EDVYQTCIDG FLAIAKISAC HHLEDVLDDL VVSLCKFTTL LNPSSVDEPV LAFGDDAKAR MATITIFTIA NKYGDYIRTG WRNILDCILR
0901: LHKLGLLPAR VASDAADESE HSSEQGQGKP LANSLSSAHL QSMGTPRRSS GLMGRFSQLL SLDTEEPRSQ PTEQQLAAHQ RTLQTIQKCH IDSIFTESKF
1001: LQAESLLQLA RALIWAAGRP QKGTSSPEDE DTAVFCLELL IAITLNNRDR IVLLWQGVYE HIATIAQSTV MPCNLVDKAI FGLLRICQRL LPYKESLADE
1101: LLRSLQLVLK LDARVADAYC EQIAIEVSRL VKANANHIRS QAGWRTITSL LSITARHPEA SESGFDAVSF VMSEGTHLYP ANYVLCVDAA RQFAESRVGQ
1201: SERSIRALDL MGDSLEFLAK WALSAKENMG EEDFGKMSQD IGEMWLRLVQ GLRKVCLDQR EDVRNHALQS LQKCLGGVDG INLAHSMWSQ CFDKVIFTVL
1301: DDLLEIAAGS QKDYRNMEGT LLLAIKLLSK VFLQQLQELS QLSTFCKLWL GVLTRMEKYM KVKVRGKKSD KLQESVPELL KNILLVMKTK GVLLQRSALG
1401: GDSLWELTWL HVNNIAPSMR LELFPDQESS QLGDDETVSN GLSSPENTTG S
Arabidopsis Description
GNARF guanine-nucleotide exchange factor GNOM [Source:UniProtKB/Swiss-Prot;Acc:Q42510]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.