Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- cytosol 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d013590_P001 | |
| Zm00001d014731_P017 | |
| Zm00001d029910_P001 | |
| Zm00001d047092_P001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER91946 | Sorghum | plastid | 96.49 | 96.49 |
| Zm00001d047092_P001 | Maize | mitochondrion, plastid | 93.97 | 94.23 |
| TraesCS5A01G361300.1 | Wheat | cytosol | 79.1 | 87.99 |
| Os02t0326600-01 | Rice | cytosol, plasma membrane | 61.43 | 87.95 |
| TraesCS5D01G370200.1 | Wheat | cytosol | 83.52 | 86.87 |
| TraesCS5B01G363900.1 | Wheat | cytosol, plasma membrane | 85.41 | 86.14 |
| HORVU5Hr1G088970.4 | Barley | plastid | 77.35 | 83.94 |
| GSMUA_Achr6P22810_001 | Banana | golgi | 54.42 | 67.01 |
| GSMUA_Achr6P03140_001 | Banana | cytosol, nucleus, plastid | 35.76 | 62.2 |
| KRH31013 | Soybean | cytosol | 54.7 | 61.81 |
| PGSC0003DMT400072858 | Potato | cytosol | 62.62 | 61.63 |
| Solyc05g013040.2.1 | Tomato | cytosol | 62.55 | 61.56 |
| Zm00001d013590_P001 | Maize | mitochondrion | 61.08 | 61.55 |
| Solyc04g005560.2.1 | Tomato | nucleus | 62.13 | 61.4 |
| VIT_02s0012g01790.t01 | Wine grape | cytosol | 62.69 | 60.82 |
| AT1G13980.1 | Thale cress | cytosol | 61.36 | 60.3 |
| KRG97867 | Soybean | cytosol | 62.13 | 60.15 |
| CDX98140 | Canola | cytosol | 61.01 | 60.08 |
| Bra019694.1-P | Field mustard | cytosol | 60.94 | 60.01 |
| CDY36422 | Canola | cytosol | 60.87 | 59.9 |
| KRH15072 | Soybean | cytosol | 59.82 | 57.71 |
| KRH73064 | Soybean | cytosol | 59.12 | 57.27 |
| KRG97865 | Soybean | cytosol | 58.42 | 56.55 |
| KRH31014 | Soybean | nucleus | 57.85 | 56.01 |
| CDY69502 | Canola | cytosol | 8.49 | 45.66 |
| Zm00001d041752_P001 | Maize | cytosol | 37.45 | 37.87 |
| Zm00001d053688_P002 | Maize | plastid | 21.39 | 18.02 |
| Zm00001d028438_P002 | Maize | plastid | 22.3 | 17.72 |
| Zm00001d046717_P009 | Maize | plastid | 20.41 | 16.96 |
| Zm00001d006607_P066 | Maize | cytosol | 19.78 | 16.43 |
| Zm00001d021806_P005 | Maize | cytosol | 19.78 | 16.39 |
Protein Annotations
| Gene3D:1.10.1000.11 | Gene3D:1.10.220.20 | EntrezGene:103637660 | MapMan:22.3.3.1 | UniProt:A0A1D6K8I6 | InterPro:ARM-type_fold |
| GO:GO:0003674 | GO:GO:0005086 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0032012 | GO:GO:0065009 | InterPro:IPR000904 | InterPro:IPR023394 |
| ProteinID:ONL99837.1 | PFAM:PF01369 | PFAM:PF12783 | PFscan:PS50190 | PANTHER:PTHR44190 | PANTHER:PTHR44190:SF3 |
| SMART:SM00222 | SUPFAM:SSF48371 | SUPFAM:SSF48425 | InterPro:Sec7_C_sf | InterPro:Sec7_N | InterPro:Sec7_dom |
| InterPro:Sec7_dom_sf | UniParc:UPI00022142EC | EnsemblPlantsGene:Zm00001d029910 | EnsemblPlants:Zm00001d029910_P001 | EnsemblPlants:Zm00001d029910_T001 | SEG:seg |
Description
ARF guanine-nucleotide exchange factor GNOM
Coordinates
chr1:+:93744451..93750150
Molecular Weight (calculated)
158829.0 Da
IEP (calculated)
5.329
GRAVY (calculated)
-0.019
Length
1426 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGGVRAASPS GAGSGAVAGA GSDHGAPRLA MACVLASEAA TVLAVMRRNV RWAGVRYGGG DGGAGDDEHL DHPLVAGLKV LRRRAAAWGQ GSWAGVEPLL
0101: YLRPFLDIVC SDETGAPITG AALSSLHKIL TLDVVGPGAP GAAGAMAAVV DAVTACRFEV TDPASEEAVL ARVLQVLLAC VRSRAAPALA NRHVCTIVNT
0201: CFRVVQQAGT KGELLQRVSR QTMQEVIRTV FARLPDINVT LLSDEQVAGC KNPCLGAEET ENGKSDYVCL NSSGDEVGDG SGVMQDKDLM EPFGVPCMVE
0301: ILQFLCSLLN IAEDIELNPR MSPIDFDEDV PLFALGLINS AIEFSASSIH RHQKLLAFVQ DELFRNLMHF GLSMSPLILS TVCSIVFTLF YHLRHELKLQ
0401: IEAFFSCVIL RLAQSRYGAS YQQQEVALEA LIDFCWQKEF MAEMYANMDC DLQCSNIFEE LANLLSKSAF PVNSPLSALN VLALDGLVAV IQAMAQRTDN
0501: APQHHDQTVP EISEYFPFWQ LKCESSNDPD QWVKFVHQQK SIKTKLMIGV EHFNRDKKKG FEYLQAVHLL PEKLDPHNVA LFFRYTPGLD KNLLGDYLGN
0601: HDEFSIQVLH EFARTFDFKD MNLDAALRLF LETFRLPGES QKIQRILEAF SERYYEQSPQ MFVNRDAALV LSYSVIMLNT DQHNVRVKKK MTEEDFIRNN
0701: RRINGGNDLP REFLSELYYS ICRNEIRTIP EQGAGCSEMS FSRWVDLMWR SKRTSLYIAC DSYPFLDHDM FSLMAGPTVA AVSVVFDNVE HEEVLTGCID
0801: GFLSVAKLAA FYHLDDVLND LVVALSKFTT LLNTSYIDDP VIAFGEDTKA RMATEAVFTI ATAYGDHIRS GWRNIIDCIL RLHKIGLLPG RLTGDTTDDQ
0901: ESSSDSLPGK HTSSAPQVLP ISTPRKTYGL MGRFSQLLYL DADEPRSRPT EEQLAAQRNA SETVKKCQIG IIFTESKFLQ ADSLSNLARA LIQAAGRPQK
1001: ITSSLDDEGV AALCLELLIT VTLNNRDRIV LLWQDVFEHI THIVQCTVMP CNLVEKAVFG LLHICQRLLP YKANLVDDLL RSLQLILKLD ARVADAYCEN
1101: ITLEVTRLVK ANATHIKSQM GWRTIISLLC ITARHPDASD AGFEALVFIM SEGVHLSPAN FILSVEASRQ FAESRLGSAE RSIHALNLMA DSVNCLVRWS
1201: QEVREAGGEA DRILEGIAEM WLRLVQALRK VCMDQREEVR NHALLSLHRC LVVDGISVKS STWLMAFDII FQLLDELLEI AQSYSPKDFR NMEVSLLHAV
1301: KLLCKVFLQS LKDLSGQHSF DKLWLEVLDM IEKFMKVKLR GRRTEKLQEA IPELVKNILM MMKASGILSK TGASENSFWE ATWLQVNKIA PSLQLEIFPD
1401: NEDGSTTQVE ENKLDTQVQS DQNNDR
0101: YLRPFLDIVC SDETGAPITG AALSSLHKIL TLDVVGPGAP GAAGAMAAVV DAVTACRFEV TDPASEEAVL ARVLQVLLAC VRSRAAPALA NRHVCTIVNT
0201: CFRVVQQAGT KGELLQRVSR QTMQEVIRTV FARLPDINVT LLSDEQVAGC KNPCLGAEET ENGKSDYVCL NSSGDEVGDG SGVMQDKDLM EPFGVPCMVE
0301: ILQFLCSLLN IAEDIELNPR MSPIDFDEDV PLFALGLINS AIEFSASSIH RHQKLLAFVQ DELFRNLMHF GLSMSPLILS TVCSIVFTLF YHLRHELKLQ
0401: IEAFFSCVIL RLAQSRYGAS YQQQEVALEA LIDFCWQKEF MAEMYANMDC DLQCSNIFEE LANLLSKSAF PVNSPLSALN VLALDGLVAV IQAMAQRTDN
0501: APQHHDQTVP EISEYFPFWQ LKCESSNDPD QWVKFVHQQK SIKTKLMIGV EHFNRDKKKG FEYLQAVHLL PEKLDPHNVA LFFRYTPGLD KNLLGDYLGN
0601: HDEFSIQVLH EFARTFDFKD MNLDAALRLF LETFRLPGES QKIQRILEAF SERYYEQSPQ MFVNRDAALV LSYSVIMLNT DQHNVRVKKK MTEEDFIRNN
0701: RRINGGNDLP REFLSELYYS ICRNEIRTIP EQGAGCSEMS FSRWVDLMWR SKRTSLYIAC DSYPFLDHDM FSLMAGPTVA AVSVVFDNVE HEEVLTGCID
0801: GFLSVAKLAA FYHLDDVLND LVVALSKFTT LLNTSYIDDP VIAFGEDTKA RMATEAVFTI ATAYGDHIRS GWRNIIDCIL RLHKIGLLPG RLTGDTTDDQ
0901: ESSSDSLPGK HTSSAPQVLP ISTPRKTYGL MGRFSQLLYL DADEPRSRPT EEQLAAQRNA SETVKKCQIG IIFTESKFLQ ADSLSNLARA LIQAAGRPQK
1001: ITSSLDDEGV AALCLELLIT VTLNNRDRIV LLWQDVFEHI THIVQCTVMP CNLVEKAVFG LLHICQRLLP YKANLVDDLL RSLQLILKLD ARVADAYCEN
1101: ITLEVTRLVK ANATHIKSQM GWRTIISLLC ITARHPDASD AGFEALVFIM SEGVHLSPAN FILSVEASRQ FAESRLGSAE RSIHALNLMA DSVNCLVRWS
1201: QEVREAGGEA DRILEGIAEM WLRLVQALRK VCMDQREEVR NHALLSLHRC LVVDGISVKS STWLMAFDII FQLLDELLEI AQSYSPKDFR NMEVSLLHAV
1301: KLLCKVFLQS LKDLSGQHSF DKLWLEVLDM IEKFMKVKLR GRRTEKLQEA IPELVKNILM MMKASGILSK TGASENSFWE ATWLQVNKIA PSLQLEIFPD
1401: NEDGSTTQVE ENKLDTQVQS DQNNDR
0001: MGRLKLHSGI KAIEEEPEDF ECTDSSNTTT LACMIDTEIA AVLAVMRRNV RWGGRYMSGD DQLEHSLIQS LKALRKQVFS WNQPWHTISP MLYLQPFLDV
0101: IRSDETGAPI TSIALSSVYK ILNLNVIDQN TANIEDAMHL VVDSVTSCRF EVTDPASEEV VLMKILQVLL ACMKNKASVM LSNQHVCTVV NTCFRVVHQA
0201: GMKGELLQRV ARHTMHELVR CIFSHLPDVE RTETTLVNRA GSIKQEKAGV DSDYAIVSKP VEDGNANSEY DVENSMATFA TGAQSLMDDG PVGPGSRKPA
0301: SPYDLHIMTE PYGVPSMVEI FHFLCSLLNV VEHVGMGSRS NTIAFDEDVP LFALNLINSA IELGGSSIRH HPRLLSLIQD ELFRNLMQFG LSMSPLILSM
0401: VCSIVLNLYQ HLRTELKLQL EAFFSCVILR LAQGKYGPSY QQQEVAMEAL VNFCRQKSFM VEMYANLDCD ITCSNVFEEL SNLLSKSTFP VNCPLSAMHI
0501: LALDGLIAVI QGMAERISNG LTGLDLGPVH LDEYTPFWMV KCDNYSDPNH WVSFVRRRKY IKRRLMIGAD HFNRDPKKGL EFLQGTHLLP DKLDPQSVAC
0601: FFRYTAGLDK NLVGDFLGNH DEFCVQVLNE FAGTFDFQYM NLDTALRLFL ETFRLPGESQ KIQRVLEAFS ERYYMQSPEI LANKDAALVL SYSIIMLNTD
0701: QHNVQVKKKM TEEDFIRNNR HINGGNDLPR EFLSELFHSI CNNEIRTTPE QGAGFPEMTP SRWIDLMHKS KKTAPYILAD SRAYLDHDMF AIMSGPTIAA
0801: ISVVFDHAEH EDVYQTCIDG FLAIAKISAC HHLEDVLDDL VVSLCKFTTL LNPSSVDEPV LAFGDDAKAR MATITIFTIA NKYGDYIRTG WRNILDCILR
0901: LHKLGLLPAR VASDAADESE HSSEQGQGKP LANSLSSAHL QSMGTPRRSS GLMGRFSQLL SLDTEEPRSQ PTEQQLAAHQ RTLQTIQKCH IDSIFTESKF
1001: LQAESLLQLA RALIWAAGRP QKGTSSPEDE DTAVFCLELL IAITLNNRDR IVLLWQGVYE HIATIAQSTV MPCNLVDKAI FGLLRICQRL LPYKESLADE
1101: LLRSLQLVLK LDARVADAYC EQIAIEVSRL VKANANHIRS QAGWRTITSL LSITARHPEA SESGFDAVSF VMSEGTHLYP ANYVLCVDAA RQFAESRVGQ
1201: SERSIRALDL MGDSLEFLAK WALSAKENMG EEDFGKMSQD IGEMWLRLVQ GLRKVCLDQR EDVRNHALQS LQKCLGGVDG INLAHSMWSQ CFDKVIFTVL
1301: DDLLEIAAGS QKDYRNMEGT LLLAIKLLSK VFLQQLQELS QLSTFCKLWL GVLTRMEKYM KVKVRGKKSD KLQESVPELL KNILLVMKTK GVLLQRSALG
1401: GDSLWELTWL HVNNIAPSMR LELFPDQESS QLGDDETVSN GLSSPENTTG S
0101: IRSDETGAPI TSIALSSVYK ILNLNVIDQN TANIEDAMHL VVDSVTSCRF EVTDPASEEV VLMKILQVLL ACMKNKASVM LSNQHVCTVV NTCFRVVHQA
0201: GMKGELLQRV ARHTMHELVR CIFSHLPDVE RTETTLVNRA GSIKQEKAGV DSDYAIVSKP VEDGNANSEY DVENSMATFA TGAQSLMDDG PVGPGSRKPA
0301: SPYDLHIMTE PYGVPSMVEI FHFLCSLLNV VEHVGMGSRS NTIAFDEDVP LFALNLINSA IELGGSSIRH HPRLLSLIQD ELFRNLMQFG LSMSPLILSM
0401: VCSIVLNLYQ HLRTELKLQL EAFFSCVILR LAQGKYGPSY QQQEVAMEAL VNFCRQKSFM VEMYANLDCD ITCSNVFEEL SNLLSKSTFP VNCPLSAMHI
0501: LALDGLIAVI QGMAERISNG LTGLDLGPVH LDEYTPFWMV KCDNYSDPNH WVSFVRRRKY IKRRLMIGAD HFNRDPKKGL EFLQGTHLLP DKLDPQSVAC
0601: FFRYTAGLDK NLVGDFLGNH DEFCVQVLNE FAGTFDFQYM NLDTALRLFL ETFRLPGESQ KIQRVLEAFS ERYYMQSPEI LANKDAALVL SYSIIMLNTD
0701: QHNVQVKKKM TEEDFIRNNR HINGGNDLPR EFLSELFHSI CNNEIRTTPE QGAGFPEMTP SRWIDLMHKS KKTAPYILAD SRAYLDHDMF AIMSGPTIAA
0801: ISVVFDHAEH EDVYQTCIDG FLAIAKISAC HHLEDVLDDL VVSLCKFTTL LNPSSVDEPV LAFGDDAKAR MATITIFTIA NKYGDYIRTG WRNILDCILR
0901: LHKLGLLPAR VASDAADESE HSSEQGQGKP LANSLSSAHL QSMGTPRRSS GLMGRFSQLL SLDTEEPRSQ PTEQQLAAHQ RTLQTIQKCH IDSIFTESKF
1001: LQAESLLQLA RALIWAAGRP QKGTSSPEDE DTAVFCLELL IAITLNNRDR IVLLWQGVYE HIATIAQSTV MPCNLVDKAI FGLLRICQRL LPYKESLADE
1101: LLRSLQLVLK LDARVADAYC EQIAIEVSRL VKANANHIRS QAGWRTITSL LSITARHPEA SESGFDAVSF VMSEGTHLYP ANYVLCVDAA RQFAESRVGQ
1201: SERSIRALDL MGDSLEFLAK WALSAKENMG EEDFGKMSQD IGEMWLRLVQ GLRKVCLDQR EDVRNHALQS LQKCLGGVDG INLAHSMWSQ CFDKVIFTVL
1301: DDLLEIAAGS QKDYRNMEGT LLLAIKLLSK VFLQQLQELS QLSTFCKLWL GVLTRMEKYM KVKVRGKKSD KLQESVPELL KNILLVMKTK GVLLQRSALG
1401: GDSLWELTWL HVNNIAPSMR LELFPDQESS QLGDDETVSN GLSSPENTTG S
Arabidopsis Description
GNARF guanine-nucleotide exchange factor GNOM [Source:UniProtKB/Swiss-Prot;Acc:Q42510]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.