Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- mitochondrion 2
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G370200.1 | Wheat | cytosol | 95.9 | 98.91 |
| TraesCS5A01G361300.1 | Wheat | cytosol | 89.32 | 98.52 |
| HORVU5Hr1G088970.4 | Barley | plastid | 86.85 | 93.46 |
| EER91946 | Sorghum | plastid | 87.27 | 86.54 |
| Zm00001d047092_P001 | Maize | mitochondrion, plastid | 86.21 | 85.72 |
| Zm00001d029910_P001 | Maize | plastid | 86.14 | 85.41 |
| TraesCS3B01G114200.1 | Wheat | plastid | 78.15 | 78.59 |
| GSMUA_Achr6P22810_001 | Banana | golgi | 54.95 | 67.1 |
| KRH31013 | Soybean | cytosol | 55.59 | 62.28 |
| VIT_02s0012g01790.t01 | Wine grape | cytosol | 63.86 | 61.43 |
| PGSC0003DMT400072858 | Potato | cytosol | 62.87 | 61.35 |
| GSMUA_Achr6P03140_001 | Banana | cytosol, nucleus, plastid | 35.57 | 61.34 |
| Solyc05g013040.2.1 | Tomato | cytosol | 62.8 | 61.28 |
| Solyc04g005560.2.1 | Tomato | nucleus | 62.38 | 61.12 |
| AT1G13980.1 | Thale cress | cytosol | 62.38 | 60.79 |
| CDX98140 | Canola | cytosol | 62.16 | 60.7 |
| Bra019694.1-P | Field mustard | cytosol | 62.09 | 60.64 |
| KRG97867 | Soybean | cytosol | 63.08 | 60.56 |
| CDY36422 | Canola | cytosol | 62.02 | 60.52 |
| TraesCS4B01G018700.1 | Wheat | cytosol | 60.18 | 60.14 |
| KRH15072 | Soybean | cytosol | 60.18 | 57.58 |
| KRH73064 | Soybean | cytosol | 59.55 | 57.2 |
| KRG97865 | Soybean | cytosol | 58.91 | 56.55 |
| KRH31014 | Soybean | nucleus | 58.35 | 56.01 |
| CDY69502 | Canola | cytosol | 8.35 | 44.53 |
| TraesCS3B01G274600.1 | Wheat | cytosol | 39.39 | 40.13 |
| TraesCS6B01G195700.1 | Wheat | plastid | 21.0 | 17.66 |
| TraesCS2B01G230000.1 | Wheat | cytosol, golgi | 19.94 | 16.99 |
| TraesCS4B01G224700.1 | Wheat | plastid | 21.22 | 16.78 |
| TraesCS7B01G299100.1 | Wheat | cytosol | 19.87 | 16.61 |
Protein Annotations
| Gene3D:1.10.1000.11 | Gene3D:1.10.220.20 | MapMan:22.3.3.1 | InterPro:ARM-type_fold | GO:GO:0003674 | GO:GO:0005086 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0032012 | InterPro:IPR000904 | InterPro:IPR023394 | PFAM:PF01369 | PFAM:PF12783 | PFscan:PS50190 |
| PFscan:PS51257 | PANTHER:PTHR44190 | PANTHER:PTHR44190:SF3 | SMART:SM00222 | SUPFAM:SSF48371 | SUPFAM:SSF48425 |
| InterPro:Sec7_C_sf | InterPro:Sec7_N | InterPro:Sec7_dom | InterPro:Sec7_dom_sf | EnsemblPlantsGene:TraesCS5B01G363900 | EnsemblPlants:TraesCS5B01G363900.1 |
| TIGR:cd00171 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr5B:+:542926964..542931589
Molecular Weight (calculated)
157201.0 Da
IEP (calculated)
5.223
GRAVY (calculated)
-0.020
Length
1414 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGGLRAASSA SPSSGVAMAC VVASEVATVL AVMRRNVRWA GVRYGGDDGG GAEEEHLDHP LIAGLKSLRR RAAAWGTRWP EADPLLCLRP FLDVVRSDET
0101: GAPITGSALS SLHKLLSLDL VAPGGGAAEA MGAVVEAVTG CRFEVTDPAS EEAVLARVLQ VLLACVRGRA APALSNRHVC AIVTTCFRVV QQAGTKGELL
0201: QRVSRQTMQE VIRCVFGRLA DIEPTAIVNE QISKNQDLGA EELGNGKSDY VCLNSSGDEV GGGFGAVQDK DMMESLGVPC MVEILQFLCS LLNIAEDMDV
0301: SQRMNVIDYD EDVPLFALGL INSAIELSAS SIHRHPKLLA FVQDELFHNL MQFGLSMSPL ILSTVCSTVF TLFYHLRQEL KLQIEAFFSC VILRLAQGRY
0401: GASYQQQEVA LEALVDFCRQ KEFMAEMYAN MDCDLQCSNV FEDLANLLSR SAFPVNSPLS ALNVLALDGL VAVIQAIAER TDHAHQHHGQ TVPEISEYFP
0501: FWQLKCEGSN DPDQWVRFVH QQKSIKRKLM VGVEHFNRDK KKGFEYLQGV HLLPEKLDPR SVALFFRYTP GLDKNLLGEY LGNHDEFSIL VLHEFAKTFD
0601: FEDMNLDAAL RLFLETFRLP GESQKIQRIL EAFSERYYEQ SPHMFVNRDA ALVLSYSVIM LNTDQHNVRV KKKMTEEDFI RNNRRINGGN DLPREFLSEL
0701: FYSICRNEIK TIPEQGAGCS EMSYSRWVDL VWKSKRTSVY IACDSYPFLD NDMFPIMAGP SVAAISVVFD NVEHEEILTG CIDGFLSVAK LAAFYHLDDV
0801: LNDLVVALCK FTTLLNSSYA DDPVIAFGVD TKARMATEAV FTIATTYGDH IRSGWRNIVD CILRLHKIGL LPGRLTGDTG DDQESSSDSL PSKLGSYALA
0901: VAPQALPINT PKKTFGLMGR FSQLLYLDTE EPRSQPTEEQ LAAQRNALET VKKCQIGTIF TESKFLQADS LSNLARALIQ AAGRPQRITS SLDDEGTAVF
1001: CLELLITVTL NNRDRIVLLW QGVYEHITHI VQSTVMPCNL VEKAVFGLLH ICQRLLPYKE NLVDDLLRSL QLILKLDARV ADAYCENITL EVTRLVKANA
1101: THIKSQMGWR TIISLLCVTA RHPDASDAGF EALVFIMSDG AHLSPANFII SVEASRQFAE SRLGSAERSI HALNLMADSV NCLTRWSREV KEAGGEADRI
1201: LEGIAEMWLR LVQALRKVCT DQREEVRNHA LLCLHRCLVV DGISVSSSAW LMSFDIIFQL LDELLEIAQS YSPKDFRNME VSLLHAVKLL CKVFLQSLKD
1301: LSAQSSFSKL WLEVLDMIEK FMKVKLRGRR TEKLHEAIPE LLKNILLVMK ANGVLSKTSA SEENTLWEAT WLQVNKVAPA LQPEVFPDNE SDSAAEGEQS
1401: KSESSAQEGQ TAEQ
0101: GAPITGSALS SLHKLLSLDL VAPGGGAAEA MGAVVEAVTG CRFEVTDPAS EEAVLARVLQ VLLACVRGRA APALSNRHVC AIVTTCFRVV QQAGTKGELL
0201: QRVSRQTMQE VIRCVFGRLA DIEPTAIVNE QISKNQDLGA EELGNGKSDY VCLNSSGDEV GGGFGAVQDK DMMESLGVPC MVEILQFLCS LLNIAEDMDV
0301: SQRMNVIDYD EDVPLFALGL INSAIELSAS SIHRHPKLLA FVQDELFHNL MQFGLSMSPL ILSTVCSTVF TLFYHLRQEL KLQIEAFFSC VILRLAQGRY
0401: GASYQQQEVA LEALVDFCRQ KEFMAEMYAN MDCDLQCSNV FEDLANLLSR SAFPVNSPLS ALNVLALDGL VAVIQAIAER TDHAHQHHGQ TVPEISEYFP
0501: FWQLKCEGSN DPDQWVRFVH QQKSIKRKLM VGVEHFNRDK KKGFEYLQGV HLLPEKLDPR SVALFFRYTP GLDKNLLGEY LGNHDEFSIL VLHEFAKTFD
0601: FEDMNLDAAL RLFLETFRLP GESQKIQRIL EAFSERYYEQ SPHMFVNRDA ALVLSYSVIM LNTDQHNVRV KKKMTEEDFI RNNRRINGGN DLPREFLSEL
0701: FYSICRNEIK TIPEQGAGCS EMSYSRWVDL VWKSKRTSVY IACDSYPFLD NDMFPIMAGP SVAAISVVFD NVEHEEILTG CIDGFLSVAK LAAFYHLDDV
0801: LNDLVVALCK FTTLLNSSYA DDPVIAFGVD TKARMATEAV FTIATTYGDH IRSGWRNIVD CILRLHKIGL LPGRLTGDTG DDQESSSDSL PSKLGSYALA
0901: VAPQALPINT PKKTFGLMGR FSQLLYLDTE EPRSQPTEEQ LAAQRNALET VKKCQIGTIF TESKFLQADS LSNLARALIQ AAGRPQRITS SLDDEGTAVF
1001: CLELLITVTL NNRDRIVLLW QGVYEHITHI VQSTVMPCNL VEKAVFGLLH ICQRLLPYKE NLVDDLLRSL QLILKLDARV ADAYCENITL EVTRLVKANA
1101: THIKSQMGWR TIISLLCVTA RHPDASDAGF EALVFIMSDG AHLSPANFII SVEASRQFAE SRLGSAERSI HALNLMADSV NCLTRWSREV KEAGGEADRI
1201: LEGIAEMWLR LVQALRKVCT DQREEVRNHA LLCLHRCLVV DGISVSSSAW LMSFDIIFQL LDELLEIAQS YSPKDFRNME VSLLHAVKLL CKVFLQSLKD
1301: LSAQSSFSKL WLEVLDMIEK FMKVKLRGRR TEKLHEAIPE LLKNILLVMK ANGVLSKTSA SEENTLWEAT WLQVNKVAPA LQPEVFPDNE SDSAAEGEQS
1401: KSESSAQEGQ TAEQ
0001: MGRLKLHSGI KAIEEEPEDF ECTDSSNTTT LACMIDTEIA AVLAVMRRNV RWGGRYMSGD DQLEHSLIQS LKALRKQVFS WNQPWHTISP MLYLQPFLDV
0101: IRSDETGAPI TSIALSSVYK ILNLNVIDQN TANIEDAMHL VVDSVTSCRF EVTDPASEEV VLMKILQVLL ACMKNKASVM LSNQHVCTVV NTCFRVVHQA
0201: GMKGELLQRV ARHTMHELVR CIFSHLPDVE RTETTLVNRA GSIKQEKAGV DSDYAIVSKP VEDGNANSEY DVENSMATFA TGAQSLMDDG PVGPGSRKPA
0301: SPYDLHIMTE PYGVPSMVEI FHFLCSLLNV VEHVGMGSRS NTIAFDEDVP LFALNLINSA IELGGSSIRH HPRLLSLIQD ELFRNLMQFG LSMSPLILSM
0401: VCSIVLNLYQ HLRTELKLQL EAFFSCVILR LAQGKYGPSY QQQEVAMEAL VNFCRQKSFM VEMYANLDCD ITCSNVFEEL SNLLSKSTFP VNCPLSAMHI
0501: LALDGLIAVI QGMAERISNG LTGLDLGPVH LDEYTPFWMV KCDNYSDPNH WVSFVRRRKY IKRRLMIGAD HFNRDPKKGL EFLQGTHLLP DKLDPQSVAC
0601: FFRYTAGLDK NLVGDFLGNH DEFCVQVLNE FAGTFDFQYM NLDTALRLFL ETFRLPGESQ KIQRVLEAFS ERYYMQSPEI LANKDAALVL SYSIIMLNTD
0701: QHNVQVKKKM TEEDFIRNNR HINGGNDLPR EFLSELFHSI CNNEIRTTPE QGAGFPEMTP SRWIDLMHKS KKTAPYILAD SRAYLDHDMF AIMSGPTIAA
0801: ISVVFDHAEH EDVYQTCIDG FLAIAKISAC HHLEDVLDDL VVSLCKFTTL LNPSSVDEPV LAFGDDAKAR MATITIFTIA NKYGDYIRTG WRNILDCILR
0901: LHKLGLLPAR VASDAADESE HSSEQGQGKP LANSLSSAHL QSMGTPRRSS GLMGRFSQLL SLDTEEPRSQ PTEQQLAAHQ RTLQTIQKCH IDSIFTESKF
1001: LQAESLLQLA RALIWAAGRP QKGTSSPEDE DTAVFCLELL IAITLNNRDR IVLLWQGVYE HIATIAQSTV MPCNLVDKAI FGLLRICQRL LPYKESLADE
1101: LLRSLQLVLK LDARVADAYC EQIAIEVSRL VKANANHIRS QAGWRTITSL LSITARHPEA SESGFDAVSF VMSEGTHLYP ANYVLCVDAA RQFAESRVGQ
1201: SERSIRALDL MGDSLEFLAK WALSAKENMG EEDFGKMSQD IGEMWLRLVQ GLRKVCLDQR EDVRNHALQS LQKCLGGVDG INLAHSMWSQ CFDKVIFTVL
1301: DDLLEIAAGS QKDYRNMEGT LLLAIKLLSK VFLQQLQELS QLSTFCKLWL GVLTRMEKYM KVKVRGKKSD KLQESVPELL KNILLVMKTK GVLLQRSALG
1401: GDSLWELTWL HVNNIAPSMR LELFPDQESS QLGDDETVSN GLSSPENTTG S
0101: IRSDETGAPI TSIALSSVYK ILNLNVIDQN TANIEDAMHL VVDSVTSCRF EVTDPASEEV VLMKILQVLL ACMKNKASVM LSNQHVCTVV NTCFRVVHQA
0201: GMKGELLQRV ARHTMHELVR CIFSHLPDVE RTETTLVNRA GSIKQEKAGV DSDYAIVSKP VEDGNANSEY DVENSMATFA TGAQSLMDDG PVGPGSRKPA
0301: SPYDLHIMTE PYGVPSMVEI FHFLCSLLNV VEHVGMGSRS NTIAFDEDVP LFALNLINSA IELGGSSIRH HPRLLSLIQD ELFRNLMQFG LSMSPLILSM
0401: VCSIVLNLYQ HLRTELKLQL EAFFSCVILR LAQGKYGPSY QQQEVAMEAL VNFCRQKSFM VEMYANLDCD ITCSNVFEEL SNLLSKSTFP VNCPLSAMHI
0501: LALDGLIAVI QGMAERISNG LTGLDLGPVH LDEYTPFWMV KCDNYSDPNH WVSFVRRRKY IKRRLMIGAD HFNRDPKKGL EFLQGTHLLP DKLDPQSVAC
0601: FFRYTAGLDK NLVGDFLGNH DEFCVQVLNE FAGTFDFQYM NLDTALRLFL ETFRLPGESQ KIQRVLEAFS ERYYMQSPEI LANKDAALVL SYSIIMLNTD
0701: QHNVQVKKKM TEEDFIRNNR HINGGNDLPR EFLSELFHSI CNNEIRTTPE QGAGFPEMTP SRWIDLMHKS KKTAPYILAD SRAYLDHDMF AIMSGPTIAA
0801: ISVVFDHAEH EDVYQTCIDG FLAIAKISAC HHLEDVLDDL VVSLCKFTTL LNPSSVDEPV LAFGDDAKAR MATITIFTIA NKYGDYIRTG WRNILDCILR
0901: LHKLGLLPAR VASDAADESE HSSEQGQGKP LANSLSSAHL QSMGTPRRSS GLMGRFSQLL SLDTEEPRSQ PTEQQLAAHQ RTLQTIQKCH IDSIFTESKF
1001: LQAESLLQLA RALIWAAGRP QKGTSSPEDE DTAVFCLELL IAITLNNRDR IVLLWQGVYE HIATIAQSTV MPCNLVDKAI FGLLRICQRL LPYKESLADE
1101: LLRSLQLVLK LDARVADAYC EQIAIEVSRL VKANANHIRS QAGWRTITSL LSITARHPEA SESGFDAVSF VMSEGTHLYP ANYVLCVDAA RQFAESRVGQ
1201: SERSIRALDL MGDSLEFLAK WALSAKENMG EEDFGKMSQD IGEMWLRLVQ GLRKVCLDQR EDVRNHALQS LQKCLGGVDG INLAHSMWSQ CFDKVIFTVL
1301: DDLLEIAAGS QKDYRNMEGT LLLAIKLLSK VFLQQLQELS QLSTFCKLWL GVLTRMEKYM KVKVRGKKSD KLQESVPELL KNILLVMKTK GVLLQRSALG
1401: GDSLWELTWL HVNNIAPSMR LELFPDQESS QLGDDETVSN GLSSPENTTG S
Arabidopsis Description
GNARF guanine-nucleotide exchange factor GNOM [Source:UniProtKB/Swiss-Prot;Acc:Q42510]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.