Factsheet for Bra019694.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra018353.1-P
Bra019694.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13980.1	Bra019694.1-P	AT1G13980.1	10715321
AT1G13980.1	Bra019694.1-P	AT1G13980.1	18203920
AT1G13980.1	Bra018353.1-P	AT2G29960.1	10715321

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98140	Canola	cytosol	99.72	99.72
CDY69502	Canola	cytosol	18.09	98.87
AT1G13980.1	Thale cress	cytosol	95.3	95.11
VIT_02s0012g01790.t01	Wine grape	cytosol	82.25	81.02
KRG97867	Soybean	cytosol	81.49	80.11
PGSC0003DMT400072858	Potato	cytosol	79.28	79.23
Solyc05g013040.2.1	Tomato	cytosol	79.01	78.95
Solyc04g005560.2.1	Tomato	nucleus	78.11	78.38
GSMUA_Achr6P22810_001	Banana	golgi	58.84	73.58
Os03t0666100-00	Rice	extracellular, golgi	61.46	73.49
GSMUA_Achr6P03140_001	Banana	cytosol, nucleus, plastid	40.75	71.95
Zm00001d013590_P001	Maize	mitochondrion	67.82	69.4
KXG37878	Sorghum	cytosol	67.47	69.24
TraesCS4D01G016900.1	Wheat	cytosol	66.16	67.75
TraesCS4A01G294900.1	Wheat	cytosol	66.02	67.51
TraesCS4B01G018700.1	Wheat	cytosol	65.88	67.42
Os02t0326600-01	Rice	cytosol, plasma membrane	44.68	64.96
TraesCS5A01G361300.1	Wheat	cytosol	56.63	63.96
Bra040986.1-P	Field mustard	cytosol	62.71	63.36
TraesCS5D01G370200.1	Wheat	cytosol	59.25	62.58
HORVU4Hr1G002880.3	Barley	cytosol	61.4	62.52
TraesCS5B01G363900.1	Wheat	cytosol, plasma membrane	60.64	62.09
EER91946	Sorghum	plastid	60.64	61.57
HORVU5Hr1G088970.4	Barley	plastid	55.52	61.19
Zm00001d047092_P001	Maize	mitochondrion, plastid	60.01	61.11
Zm00001d029910_P001	Maize	plastid	60.01	60.94
HORVU3Hr1G017750.4	Barley	cytosol	41.3	60.53
TraesCS3A01G098600.1	Wheat	cytosol, plastid	56.91	59.41
TraesCS3B01G114200.1	Wheat	plastid	56.49	58.18
Bra028434.1-P	Field mustard	cytosol, plasma membrane, plastid	62.22	53.79
Bra002249.1-P	Field mustard	cytosol	40.75	42.97
Bra032659.1-P	Field mustard	cytosol, plastid	22.03	18.21
Bra014466.1-P	Field mustard	cytosol	22.17	18.15
Bra011611.1-P	Field mustard	plastid	20.86	17.8
Bra033555.1-P	Field mustard	plastid	19.82	17.0
Bra019446.1-P	Field mustard	cytosol	18.37	15.23

Protein Annotations

Gene3D:1.10.1000.11	Gene3D:1.10.220.20	MapMan:22.3.3.1	InterPro:ARM-type_fold	EnsemblPlantsGene:Bra019694	EnsemblPlants:Bra019694.1
EnsemblPlants:Bra019694.1-P	GO:GO:0000003	GO:GO:0000911	GO:GO:0001736	GO:GO:0003674	GO:GO:0005086
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005768	GO:GO:0005886	GO:GO:0006810	GO:GO:0006897	GO:GO:0007049	GO:GO:0007154
GO:GO:0007155	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0009605	GO:GO:0009606
GO:GO:0009653	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009826	GO:GO:0009880
GO:GO:0009942	GO:GO:0009987	GO:GO:0010087	GO:GO:0010274	GO:GO:0010311	GO:GO:0010540
GO:GO:0016020	GO:GO:0016043	GO:GO:0016049	GO:GO:0016192	GO:GO:0030154	GO:GO:0032012
GO:GO:0032509	GO:GO:0040007	GO:GO:0042802	GO:GO:0042803	GO:GO:0048765	GO:GO:0065009
GO:GO:0071555	InterPro:IPR000904	InterPro:IPR023394	UniProt:M4DT51	PFAM:PF01369	PFAM:PF12783
PFscan:PS50190	PANTHER:PTHR44190	PANTHER:PTHR44190:SF1	SMART:SM00222	SUPFAM:SSF48371	SUPFAM:SSF48425
InterPro:Sec7_C_sf	InterPro:Sec7_N	InterPro:Sec7_dom	InterPro:Sec7_dom_sf	UniParc:UPI000253EDFF	SEG:seg

Description

AT1G13980 (E=0.0) GN, VAN7, EMB30 | GN (GNOM); GTP:GDP antiporter/ protein homodimerization

Coordinates

chrA06:+:4926976..4931661

Molecular Weight (calculated)

162490.0 Da

IEP (calculated)

5.686

GRAVY (calculated)

-0.112

Length

1448 amino acids

Sequence
(BLAST)

0001: MGRLKLHSGI NAIEEEPEDF ESSESSNTTT LACMIDTEVA AVLAVMRRNV RWGGRYMSGE DQLEHSLIQS LKALRKQLFS WNQPWHTISP MLYLQPFLDV
0101: IRSDETGAPI TSIALSSVYK ILSLNVIDQN TTNIEDAMHL IVDSVTSCRF EVTDPASEEV VLMKILQVLL ACMKNRASVM LSNQHVCTVL NTCFRVVHQS
0201: GMKGELLQRV ARHTMHELVR CIFSHLPEVD RTETTLANRS EIINQEKAGV DNDYAIVTKP VEDGNANSEY DTENSVATFV SGAQSLMDDG PAGPGSRKPA
0301: SPYDLHIMTE PYGVPSMVEI FHFLCSLLNM VEHVGMGARA NTISFDEDVP LFALNMINSA IELGGASIRH HPRLLSLIQD ELFRNLMQFG LSMSPLILSM
0401: VCSIVLNLYQ HLRTELKLQL EAFFSCVILR LAQGKYGPSY QQQEVAMEAL VNFCRQKSFM VEMYANLDCD ITCSNVFEEL SNLISKSTFP VNSPLSAMHI
0501: LALDGLIAVI QGMAERISNG LTGLDLGPVH LDEYTPFWMV KCDNYSDPNH WVSFVRRRKY IKRRLMIGAD HFNRDPKKGL EFLQGTHLLP DKLDPQSVAC
0601: FFRYTAGLDK NLVGDFLGNH DEFCVQVLNE FAGTFDFQYM NLDTALRLFL ETFRLPGESQ KIQRVLEAFS ERYYMQSPEI LANKDAALVL SYSIIMLNTD
0701: QHNVQVKKKM TEEDFIRNNR HINGGNDLPR EFLSELYHSI CNNEIRTTPE QGSGFPEMTP SRWIDLMHKS KKTAPYILAD SRAYLDHDMF AIMSGPTIAA
0801: ISVVFDHAEH EDVYQTCIDG FLAIAKISAC HHLEDVLDDL VVSLCKFTTL LNPSSADEPV LAFGDDPKAR MATITIFTIA NKYGDYIRTG WRNILDCILR
0901: LHKLGLLPAR VATDAADESE LSSEQGQGKP LANSLSSAHL QAMGTPRRSS GLMGRFSQLL SLDTEEPRSQ PTEQQLAAHQ RTLQTIQKCH IDSIFTESKF
1001: LQAESLLQLA RALIWAAGRP QKGNSSPEDE DTAVFCLELL IAITLNNRDR IVLLWQGVYE HIATIAQSTV MPCNLVHKAI FGLLRICQRL LPYKESLADE
1101: LLRSLQLVLK LDARVADAYC EDIALEVSRL VKANANHIRS QAGWRTITSL LSITARHPEA SEAGFNAVSF VMSEGTHLYP ANYVLCVDAA RQFAESRVGQ
1201: SERSIRALDL MGDSLEHLAK WARTAKENMG EEDFAKTSQD FGEMWLRLVQ GLRKVCLDQR EDVRNHALQS LQKCLGGVDG INLAHSMWSQ CFDKVIFTVL
1301: DDLLEIASGS QKDYRNMEGT LLLAIKLLSK VFLQLLQELS QLSTFCKLWL GVLTRMEKYM KVKVRSKKSD KLQETVPELL KNILLVMKTK GVLLQRSALG
1401: GDSLWELTWL HVNNIAPSMR LELFPDQESA EPCDDESNGL ASAEAGAT

Best Arabidopsis Sequence Match ( AT1G13980.1 )
(BLAST)

0001: MGRLKLHSGI KAIEEEPEDF ECTDSSNTTT LACMIDTEIA AVLAVMRRNV RWGGRYMSGD DQLEHSLIQS LKALRKQVFS WNQPWHTISP MLYLQPFLDV
0101: IRSDETGAPI TSIALSSVYK ILNLNVIDQN TANIEDAMHL VVDSVTSCRF EVTDPASEEV VLMKILQVLL ACMKNKASVM LSNQHVCTVV NTCFRVVHQA
0201: GMKGELLQRV ARHTMHELVR CIFSHLPDVE RTETTLVNRA GSIKQEKAGV DSDYAIVSKP VEDGNANSEY DVENSMATFA TGAQSLMDDG PVGPGSRKPA
0301: SPYDLHIMTE PYGVPSMVEI FHFLCSLLNV VEHVGMGSRS NTIAFDEDVP LFALNLINSA IELGGSSIRH HPRLLSLIQD ELFRNLMQFG LSMSPLILSM
0401: VCSIVLNLYQ HLRTELKLQL EAFFSCVILR LAQGKYGPSY QQQEVAMEAL VNFCRQKSFM VEMYANLDCD ITCSNVFEEL SNLLSKSTFP VNCPLSAMHI
0501: LALDGLIAVI QGMAERISNG LTGLDLGPVH LDEYTPFWMV KCDNYSDPNH WVSFVRRRKY IKRRLMIGAD HFNRDPKKGL EFLQGTHLLP DKLDPQSVAC
0601: FFRYTAGLDK NLVGDFLGNH DEFCVQVLNE FAGTFDFQYM NLDTALRLFL ETFRLPGESQ KIQRVLEAFS ERYYMQSPEI LANKDAALVL SYSIIMLNTD
0701: QHNVQVKKKM TEEDFIRNNR HINGGNDLPR EFLSELFHSI CNNEIRTTPE QGAGFPEMTP SRWIDLMHKS KKTAPYILAD SRAYLDHDMF AIMSGPTIAA
0801: ISVVFDHAEH EDVYQTCIDG FLAIAKISAC HHLEDVLDDL VVSLCKFTTL LNPSSVDEPV LAFGDDAKAR MATITIFTIA NKYGDYIRTG WRNILDCILR
0901: LHKLGLLPAR VASDAADESE HSSEQGQGKP LANSLSSAHL QSMGTPRRSS GLMGRFSQLL SLDTEEPRSQ PTEQQLAAHQ RTLQTIQKCH IDSIFTESKF
1001: LQAESLLQLA RALIWAAGRP QKGTSSPEDE DTAVFCLELL IAITLNNRDR IVLLWQGVYE HIATIAQSTV MPCNLVDKAI FGLLRICQRL LPYKESLADE
1101: LLRSLQLVLK LDARVADAYC EQIAIEVSRL VKANANHIRS QAGWRTITSL LSITARHPEA SESGFDAVSF VMSEGTHLYP ANYVLCVDAA RQFAESRVGQ
1201: SERSIRALDL MGDSLEFLAK WALSAKENMG EEDFGKMSQD IGEMWLRLVQ GLRKVCLDQR EDVRNHALQS LQKCLGGVDG INLAHSMWSQ CFDKVIFTVL
1301: DDLLEIAAGS QKDYRNMEGT LLLAIKLLSK VFLQQLQELS QLSTFCKLWL GVLTRMEKYM KVKVRGKKSD KLQESVPELL KNILLVMKTK GVLLQRSALG
1401: GDSLWELTWL HVNNIAPSMR LELFPDQESS QLGDDETVSN GLSSPENTTG S

Arabidopsis Description

GNARF guanine-nucleotide exchange factor GNOM [Source:UniProtKB/Swiss-Prot;Acc:Q42510]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.