Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plasma membrane 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67432 | Canola | plastid | 97.31 | 99.15 |
| Bra040986.1-P | Field mustard | cytosol | 79.82 | 93.3 |
| AT5G39500.1 | Thale cress | cytosol | 74.93 | 86.97 |
| PGSC0003DMT400003631 | Potato | cytosol | 52.84 | 62.46 |
| Solyc02g088290.2.1 | Tomato | cytosol | 52.54 | 62.41 |
| Bra019694.1-P | Field mustard | cytosol | 53.79 | 62.22 |
| Solyc02g067010.2.1 | Tomato | cytosol | 52.18 | 60.36 |
| Bra002249.1-P | Field mustard | cytosol | 31.04 | 37.87 |
| Bra032659.1-P | Field mustard | cytosol, plastid | 18.33 | 17.52 |
| Bra014466.1-P | Field mustard | cytosol | 18.21 | 17.24 |
| Bra011611.1-P | Field mustard | plastid | 17.19 | 16.97 |
| Bra033555.1-P | Field mustard | plastid | 15.94 | 15.82 |
| Bra019446.1-P | Field mustard | cytosol | 15.22 | 14.6 |
Protein Annotations
| Gene3D:1.10.1000.11 | Gene3D:1.10.220.20 | Gene3D:1.20.5.110 | Gene3D:1.20.58.400 | MapMan:22.3.3.1 | MapMan:22.7.2.1 |
| EnsemblPlantsGene:Bra028434 | EnsemblPlants:Bra028434.1 | EnsemblPlants:Bra028434.1-P | GO:GO:0003674 | GO:GO:0005086 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006810 | GO:GO:0006886 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016192 | GO:GO:0032012 | GO:GO:0065009 | InterPro:IPR000904 | InterPro:IPR023394 | InterPro:IPR038407 |
| UniProt:M4EI19 | PFAM:PF01369 | PFAM:PF05008 | PFAM:PF12352 | PFAM:PF12783 | PFscan:PS50190 |
| PANTHER:PTHR44190 | PANTHER:PTHR44190:SF1 | SMART:SM00222 | InterPro:SNARE | SUPFAM:SSF47661 | SUPFAM:SSF48425 |
| SUPFAM:SSF58038 | InterPro:Sec7_C_sf | InterPro:Sec7_N | InterPro:Sec7_dom | InterPro:Sec7_dom_sf | TMHMM:TMhelix |
| UniParc:UPI00025432A4 | InterPro:Vesicle_trsprt_v-SNARE_N | SEG:seg | InterPro:v-SNARE_N_sf | : | : |
Description
AT5G39500 (E=0.0) | pattern formation protein, putative
Coordinates
chrA02:+:288822..295259
Molecular Weight (calculated)
187340.0 Da
IEP (calculated)
5.559
GRAVY (calculated)
-0.091
Length
1675 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEHHPSGSNS FHGGEFKSCH PKPSKVAVAS MINSEIGAVL AVMRRNVRWG VRYIGDDDDQ LEHSLIHSLK ELRKQIFLWQ TNWQNVAPKL YIQPFLDVIL
0101: SDETGAPITG VALSSVYKIL TLDVFTLDTV NVGEAMHIIV DAVKSCRFEV TDPASEEVVL MKILQVLLAC IKSKAANGLS NQDIFTIINI CLRVVHQSTS
0201: KSELLQRLAR HTMHELVRCI FSQLPYISPL ANETELNVGD KVGTVDWDQK SGESKVENGI IDSVSVTLGT DKDPRSSEMV TPETELNNDE KETEVSDDLN
0301: VAANGESAML APFGIPCMVE IFHFLCTLLN VGESGEVNSR SNPIAFDEDV PLFALGLVNS AIELGGSSFR EHPKLLSLIQ DELFCNLMQF GMSMSPLVLT
0401: TVCSIVLNLY LSFRTELKVQ LEAFFSCVLL RIAQSKHGSS YQQQEVAMEA LVDFCRQHNF MAEVFANFDC DITCSNVFED VSNLLSKSAF PVNGPLSAMH
0501: ILALDGLISM VQGMAERVGE ELPASDVPTH EEGYEAFWTV RCENYGDPNI WVPFVRKSKH IKKRLMVGAD HFNNDPKKGL QQLQALHLLP EELDPKSVAC
0601: FFRYTCGLDK NLIGDFLGNH DQFCVQVLHE FAKTFDFQNM NLDNALRLFV GTFRLPGESQ KIQRVLEAFS ERYYEQSPQI LIDKDAALLL SYSIILLNTD
0701: HHNTQVKKKM TEEDFIRNNR CINGGADLPR EYLSELYHSI CDSEIQMIPD QGTGFQMMTS SRWISVIYKS KETSPYIICD STSHLDRDMF HIVYGPTIAA
0801: TSVVFEQAEQ EYVLQRCVDG LLAIAKLSAY YHLNRVLDDL VVSLCKFTPF FASLSVDEAV LALGEDARAR MATEAVFLIA NKYGDYISSG WKSILECVLS
0901: LHKLQILPAH IASDAADDPE PSTSNTEQER PLENPVSVVV SQAQPSAAPR KSSSFIGRFS QLLSFDMEET EPLPTEEELA AYKLARGIVK DCHIDSIFSD
1001: SKFLQAESLQ QLVSSLIKAA AKDEASAVFC LELLIAVTLN NRDRILLIWQ TVYEHISGIV QSTTTPCPLV EKAVFGVLKI CQRLLPYKEN LTDELLKSLQ
1101: LVLKLDARVA DAYCEPITQE VARLVKANAS HVRSHVGWRT IISLLSITAR ITARHPEASD AGFEALRFIM SEGAHLLLAN YILCSDAARQ FAESRVGEID
1201: RSISAIDLMS NSVFCLARWS QEAKKSVGED EAMMKLSQDI GEMWLRLVNN LKRVCLDQRD QVRNHAILML QRSVAGADGI MLPQPLWFQC FDSAIFPLLD
1301: ELLAVSVENS RKTFKKTVEE TLVVATKLMS KAFLQSLQDI SQQPSFCRLW LGVLERMETY MSTKFRGKRS EKVHELIPEL LKNTLLVTKT TGVLLPGDDI
1401: GSDSFWQLTW LHVKKISPSL QSEVFPQEEL DQFQRRNAKP EDTPPARVSN LFGTMSEVFN GYERQYCDLS ATLSKKCSSA LSLDGEQKKQ KLSEIKSGLE
1501: IAEALIRKMD LEARSLPPSV KSSLLVKLRE FKSDLNNFKT EVKRITSANS NAAARDQLLE AGMADTKTAS ADQRARLMMS TERLGRTTDR LKDGRRTMME
1601: TEEIGVSILQ DLHGQRQSLL RAGDTLSGVD ENVGKSKKIL TGMTTRMNRN KWTIGAIIAA LVVAIIIILY FKLTK
0101: SDETGAPITG VALSSVYKIL TLDVFTLDTV NVGEAMHIIV DAVKSCRFEV TDPASEEVVL MKILQVLLAC IKSKAANGLS NQDIFTIINI CLRVVHQSTS
0201: KSELLQRLAR HTMHELVRCI FSQLPYISPL ANETELNVGD KVGTVDWDQK SGESKVENGI IDSVSVTLGT DKDPRSSEMV TPETELNNDE KETEVSDDLN
0301: VAANGESAML APFGIPCMVE IFHFLCTLLN VGESGEVNSR SNPIAFDEDV PLFALGLVNS AIELGGSSFR EHPKLLSLIQ DELFCNLMQF GMSMSPLVLT
0401: TVCSIVLNLY LSFRTELKVQ LEAFFSCVLL RIAQSKHGSS YQQQEVAMEA LVDFCRQHNF MAEVFANFDC DITCSNVFED VSNLLSKSAF PVNGPLSAMH
0501: ILALDGLISM VQGMAERVGE ELPASDVPTH EEGYEAFWTV RCENYGDPNI WVPFVRKSKH IKKRLMVGAD HFNNDPKKGL QQLQALHLLP EELDPKSVAC
0601: FFRYTCGLDK NLIGDFLGNH DQFCVQVLHE FAKTFDFQNM NLDNALRLFV GTFRLPGESQ KIQRVLEAFS ERYYEQSPQI LIDKDAALLL SYSIILLNTD
0701: HHNTQVKKKM TEEDFIRNNR CINGGADLPR EYLSELYHSI CDSEIQMIPD QGTGFQMMTS SRWISVIYKS KETSPYIICD STSHLDRDMF HIVYGPTIAA
0801: TSVVFEQAEQ EYVLQRCVDG LLAIAKLSAY YHLNRVLDDL VVSLCKFTPF FASLSVDEAV LALGEDARAR MATEAVFLIA NKYGDYISSG WKSILECVLS
0901: LHKLQILPAH IASDAADDPE PSTSNTEQER PLENPVSVVV SQAQPSAAPR KSSSFIGRFS QLLSFDMEET EPLPTEEELA AYKLARGIVK DCHIDSIFSD
1001: SKFLQAESLQ QLVSSLIKAA AKDEASAVFC LELLIAVTLN NRDRILLIWQ TVYEHISGIV QSTTTPCPLV EKAVFGVLKI CQRLLPYKEN LTDELLKSLQ
1101: LVLKLDARVA DAYCEPITQE VARLVKANAS HVRSHVGWRT IISLLSITAR ITARHPEASD AGFEALRFIM SEGAHLLLAN YILCSDAARQ FAESRVGEID
1201: RSISAIDLMS NSVFCLARWS QEAKKSVGED EAMMKLSQDI GEMWLRLVNN LKRVCLDQRD QVRNHAILML QRSVAGADGI MLPQPLWFQC FDSAIFPLLD
1301: ELLAVSVENS RKTFKKTVEE TLVVATKLMS KAFLQSLQDI SQQPSFCRLW LGVLERMETY MSTKFRGKRS EKVHELIPEL LKNTLLVTKT TGVLLPGDDI
1401: GSDSFWQLTW LHVKKISPSL QSEVFPQEEL DQFQRRNAKP EDTPPARVSN LFGTMSEVFN GYERQYCDLS ATLSKKCSSA LSLDGEQKKQ KLSEIKSGLE
1501: IAEALIRKMD LEARSLPPSV KSSLLVKLRE FKSDLNNFKT EVKRITSANS NAAARDQLLE AGMADTKTAS ADQRARLMMS TERLGRTTDR LKDGRRTMME
1601: TEEIGVSILQ DLHGQRQSLL RAGDTLSGVD ENVGKSKKIL TGMTTRMNRN KWTIGAIIAA LVVAIIIILY FKLTK
0001: MGYQNHPSGS NSFHGEFKRC HSKPSKGAVA SMINSEIGAV LAVMRRNVRW GVRYIADDDQ LEHSLIHSLK ELRKQIFSWQ SNWQYVDPRL YIQPFLDVIL
0101: SDETGAPITG VALSSVYKIL TLEVFTLETV NVGEAMHIIV DAVKSCRFEV TDPASEEVVL MKILQVLLAC VKSKASNGLS NQDICTIVNT CLRVVHQSSS
0201: KSELLQRIAR HTMHELIRCI FSQLPFISPL ANECELHVDN KVGTVDWDPN SGEKRVENGN IASISDTLGT DKDDPSSEMV IPETDLRNDE KKTEVSDDLN
0301: AAANGENAMM APYGIPCMVE IFHFLCTLLN VGENGEVNSR SNPIAFDEDV PLFALGLINS AIELGGPSFR EHPKLLTLIQ DDLFCNLMQF GMSMSPLILS
0401: TVCSIVLNLY LNLRTELKVQ LEAFFSYVLL RIAQSKHGSS YQQQEVAMEA LVDLCRQHTF IAEVFANFDC DITCSNVFED VSNLLSKNAF PVNGPLSAMH
0501: ILALDGLISM VQGMAERVGE ELPASDVPTH EERYEEFWTV RCENYGDPNF WVPFVRKVKH IKKKLMLGAD RFNRDPNKGL QYLQGVHLLP EKLDPKSVAC
0601: FFRYTCGLDK NVMGDFLGNH DQFCIQVLHE FAKTFDFQNM NLATALRLFV GTFKLSGEAQ KIHRVLEAFS ERYYEQSPHI LIDKDAAFVL AYSIILLNTD
0701: QHNAQVKTRM TEEDFIRNNR TINGGADLPR EYLSEIYHSI RHSEIQMDED KGTGFQLMTA SRWISVIYKS KETSPYIQCD AASHLDRDMF YIVSGPTIAA
0801: TSVVFEQAEQ EDVLRRCIDG LLAIAKLSAY YHLNSVLDDL VVSLCKFTPF FAPLSADEAV LVLGEDARAR MATEAVFLIA NKYGDYISAG WKNILECVLS
0901: LNKLHILPDH IASDAADDPE LSTSNLEQEK PSANPVPVVS QSQPSAMPRK SSSFIGRFLL SFDSEETKPL PSEEELAAYK HARGIVKDCH IDSIFSDSKF
1001: LQAESLQQLV NSLIRASGKD EASSVFCLEL LIAVTLNNRD RILLIWPTVY EHILGIVQLT LTPCTLVEKA VFGVLKICQR LLPYKENLTD ELLKSLQLVL
1101: KLKAKVADAY CERIAQEVVR LVKANASHVR SRTGWRTIIS LLSITARHPE ASEAGFEALR FIMSEGAHLL PSNYELCLDA ASHFAESRVG EVDRSISAID
1201: LMSNSVFCLA RWSQEAKNSI GETDAMMKLS EDIGKMWLKL VKNLKKVCLD QRDEVRNHAI SMLQRAIAGA DGIMLPQPLW FQCFDSAVFI LLDDVLTFSI
1301: ENSRKTLKKT VEETLVLATK LMSKAFLQSL QDISQQPSFC RLWVGVLNRL ETYMSTEFRG KRSEKVNELI PELLKNTLLV MKATGVLLPG DDIGSDSFWQ
1401: LTWLHVNKIS PSLQSEVFPQ EELDQFQRRN AKPEDPPVPG NEV
0101: SDETGAPITG VALSSVYKIL TLEVFTLETV NVGEAMHIIV DAVKSCRFEV TDPASEEVVL MKILQVLLAC VKSKASNGLS NQDICTIVNT CLRVVHQSSS
0201: KSELLQRIAR HTMHELIRCI FSQLPFISPL ANECELHVDN KVGTVDWDPN SGEKRVENGN IASISDTLGT DKDDPSSEMV IPETDLRNDE KKTEVSDDLN
0301: AAANGENAMM APYGIPCMVE IFHFLCTLLN VGENGEVNSR SNPIAFDEDV PLFALGLINS AIELGGPSFR EHPKLLTLIQ DDLFCNLMQF GMSMSPLILS
0401: TVCSIVLNLY LNLRTELKVQ LEAFFSYVLL RIAQSKHGSS YQQQEVAMEA LVDLCRQHTF IAEVFANFDC DITCSNVFED VSNLLSKNAF PVNGPLSAMH
0501: ILALDGLISM VQGMAERVGE ELPASDVPTH EERYEEFWTV RCENYGDPNF WVPFVRKVKH IKKKLMLGAD RFNRDPNKGL QYLQGVHLLP EKLDPKSVAC
0601: FFRYTCGLDK NVMGDFLGNH DQFCIQVLHE FAKTFDFQNM NLATALRLFV GTFKLSGEAQ KIHRVLEAFS ERYYEQSPHI LIDKDAAFVL AYSIILLNTD
0701: QHNAQVKTRM TEEDFIRNNR TINGGADLPR EYLSEIYHSI RHSEIQMDED KGTGFQLMTA SRWISVIYKS KETSPYIQCD AASHLDRDMF YIVSGPTIAA
0801: TSVVFEQAEQ EDVLRRCIDG LLAIAKLSAY YHLNSVLDDL VVSLCKFTPF FAPLSADEAV LVLGEDARAR MATEAVFLIA NKYGDYISAG WKNILECVLS
0901: LNKLHILPDH IASDAADDPE LSTSNLEQEK PSANPVPVVS QSQPSAMPRK SSSFIGRFLL SFDSEETKPL PSEEELAAYK HARGIVKDCH IDSIFSDSKF
1001: LQAESLQQLV NSLIRASGKD EASSVFCLEL LIAVTLNNRD RILLIWPTVY EHILGIVQLT LTPCTLVEKA VFGVLKICQR LLPYKENLTD ELLKSLQLVL
1101: KLKAKVADAY CERIAQEVVR LVKANASHVR SRTGWRTIIS LLSITARHPE ASEAGFEALR FIMSEGAHLL PSNYELCLDA ASHFAESRVG EVDRSISAID
1201: LMSNSVFCLA RWSQEAKNSI GETDAMMKLS EDIGKMWLKL VKNLKKVCLD QRDEVRNHAI SMLQRAIAGA DGIMLPQPLW FQCFDSAVFI LLDDVLTFSI
1301: ENSRKTLKKT VEETLVLATK LMSKAFLQSL QDISQQPSFC RLWVGVLNRL ETYMSTEFRG KRSEKVNELI PELLKNTLLV MKATGVLLPG DDIGSDSFWQ
1401: LTWLHVNKIS PSLQSEVFPQ EELDQFQRRN AKPEDPPVPG NEV
Arabidopsis Description
GNL1ARF guanine-nucleotide exchange factor GNL1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLY5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.