Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040986.1-P | Field mustard | cytosol | 86.97 | 87.58 |
| CDX74452 | Canola | cytosol | 86.97 | 87.58 |
| CDY30249 | Canola | cytosol, mitochondrion, peroxisome, plasma membrane | 85.24 | 87.42 |
| CDX67432 | Canola | plastid | 86.0 | 75.49 |
| Bra028434.1-P | Field mustard | cytosol, plasma membrane, plastid | 86.97 | 74.93 |
| PGSC0003DMT400003631 | Potato | cytosol | 61.4 | 62.53 |
| Solyc02g088290.2.1 | Tomato | cytosol | 60.64 | 62.06 |
| AT1G13980.1 | Thale cress | cytosol | 61.95 | 61.61 |
| Solyc02g067010.2.1 | Tomato | cytosol | 60.22 | 60.01 |
| AT5G19610.1 | Thale cress | cytosol | 35.83 | 37.6 |
| AT3G60860.1 | Thale cress | cytosol | 21.76 | 17.51 |
| AT1G01960.1 | Thale cress | cytosol | 21.07 | 17.37 |
| AT4G35380.1 | Thale cress | cytosol, plasma membrane, plastid | 20.03 | 16.94 |
| AT4G38200.1 | Thale cress | cytosol, mitochondrion, plastid | 19.54 | 16.72 |
| AT3G43300.1 | Thale cress | cytosol | 18.02 | 14.79 |
Protein Annotations
| Gene3D:1.10.1000.11 | Gene3D:1.10.220.20 | MapMan:22.3.3.1 | EntrezGene:833946 | ProteinID:AED94441.1 | ProteinID:ANM69458.1 |
| ArrayExpress:AT5G39500 | EnsemblPlantsGene:AT5G39500 | RefSeq:AT5G39500 | TAIR:AT5G39500 | RefSeq:AT5G39500-TAIR-G | EnsemblPlants:AT5G39500.1 |
| TAIR:AT5G39500.1 | Unigene:At.30340 | ProteinID:BAB11025.1 | Symbol:GNL1 | GO:GO:0000139 | GO:GO:0003674 |
| GO:GO:0005085 | GO:GO:0005086 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005802 | GO:GO:0005829 | GO:GO:0006810 |
| GO:GO:0006890 | GO:GO:0006897 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016192 | GO:GO:0032012 | GO:GO:0065009 |
| GO:GO:0080119 | InterPro:IPR000904 | InterPro:IPR023394 | RefSeq:NP_001318705.1 | RefSeq:NP_198766.1 | PFAM:PF01369 |
| PFAM:PF12783 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PFscan:PS50190 | PANTHER:PTHR44190 | PANTHER:PTHR44190:SF1 | UniProt:Q9FLY5 | SMART:SM00222 |
| SUPFAM:SSF48425 | InterPro:Sec7_C_sf | InterPro:Sec7_N | InterPro:Sec7_dom | InterPro:Sec7_dom_sf | UniParc:UPI000009F237 |
| SEG:seg | : | : | : | : | : |
Description
GNL1ARF guanine-nucleotide exchange factor GNL1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLY5]
Coordinates
chr5:+:15814559..15820151
Molecular Weight (calculated)
161963.0 Da
IEP (calculated)
5.303
GRAVY (calculated)
-0.084
Length
1443 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGYQNHPSGS NSFHGEFKRC HSKPSKGAVA SMINSEIGAV LAVMRRNVRW GVRYIADDDQ LEHSLIHSLK ELRKQIFSWQ SNWQYVDPRL YIQPFLDVIL
0101: SDETGAPITG VALSSVYKIL TLEVFTLETV NVGEAMHIIV DAVKSCRFEV TDPASEEVVL MKILQVLLAC VKSKASNGLS NQDICTIVNT CLRVVHQSSS
0201: KSELLQRIAR HTMHELIRCI FSQLPFISPL ANECELHVDN KVGTVDWDPN SGEKRVENGN IASISDTLGT DKDDPSSEMV IPETDLRNDE KKTEVSDDLN
0301: AAANGENAMM APYGIPCMVE IFHFLCTLLN VGENGEVNSR SNPIAFDEDV PLFALGLINS AIELGGPSFR EHPKLLTLIQ DDLFCNLMQF GMSMSPLILS
0401: TVCSIVLNLY LNLRTELKVQ LEAFFSYVLL RIAQSKHGSS YQQQEVAMEA LVDLCRQHTF IAEVFANFDC DITCSNVFED VSNLLSKNAF PVNGPLSAMH
0501: ILALDGLISM VQGMAERVGE ELPASDVPTH EERYEEFWTV RCENYGDPNF WVPFVRKVKH IKKKLMLGAD RFNRDPNKGL QYLQGVHLLP EKLDPKSVAC
0601: FFRYTCGLDK NVMGDFLGNH DQFCIQVLHE FAKTFDFQNM NLATALRLFV GTFKLSGEAQ KIHRVLEAFS ERYYEQSPHI LIDKDAAFVL AYSIILLNTD
0701: QHNAQVKTRM TEEDFIRNNR TINGGADLPR EYLSEIYHSI RHSEIQMDED KGTGFQLMTA SRWISVIYKS KETSPYIQCD AASHLDRDMF YIVSGPTIAA
0801: TSVVFEQAEQ EDVLRRCIDG LLAIAKLSAY YHLNSVLDDL VVSLCKFTPF FAPLSADEAV LVLGEDARAR MATEAVFLIA NKYGDYISAG WKNILECVLS
0901: LNKLHILPDH IASDAADDPE LSTSNLEQEK PSANPVPVVS QSQPSAMPRK SSSFIGRFLL SFDSEETKPL PSEEELAAYK HARGIVKDCH IDSIFSDSKF
1001: LQAESLQQLV NSLIRASGKD EASSVFCLEL LIAVTLNNRD RILLIWPTVY EHILGIVQLT LTPCTLVEKA VFGVLKICQR LLPYKENLTD ELLKSLQLVL
1101: KLKAKVADAY CERIAQEVVR LVKANASHVR SRTGWRTIIS LLSITARHPE ASEAGFEALR FIMSEGAHLL PSNYELCLDA ASHFAESRVG EVDRSISAID
1201: LMSNSVFCLA RWSQEAKNSI GETDAMMKLS EDIGKMWLKL VKNLKKVCLD QRDEVRNHAI SMLQRAIAGA DGIMLPQPLW FQCFDSAVFI LLDDVLTFSI
1301: ENSRKTLKKT VEETLVLATK LMSKAFLQSL QDISQQPSFC RLWVGVLNRL ETYMSTEFRG KRSEKVNELI PELLKNTLLV MKATGVLLPG DDIGSDSFWQ
1401: LTWLHVNKIS PSLQSEVFPQ EELDQFQRRN AKPEDPPVPG NEV
0101: SDETGAPITG VALSSVYKIL TLEVFTLETV NVGEAMHIIV DAVKSCRFEV TDPASEEVVL MKILQVLLAC VKSKASNGLS NQDICTIVNT CLRVVHQSSS
0201: KSELLQRIAR HTMHELIRCI FSQLPFISPL ANECELHVDN KVGTVDWDPN SGEKRVENGN IASISDTLGT DKDDPSSEMV IPETDLRNDE KKTEVSDDLN
0301: AAANGENAMM APYGIPCMVE IFHFLCTLLN VGENGEVNSR SNPIAFDEDV PLFALGLINS AIELGGPSFR EHPKLLTLIQ DDLFCNLMQF GMSMSPLILS
0401: TVCSIVLNLY LNLRTELKVQ LEAFFSYVLL RIAQSKHGSS YQQQEVAMEA LVDLCRQHTF IAEVFANFDC DITCSNVFED VSNLLSKNAF PVNGPLSAMH
0501: ILALDGLISM VQGMAERVGE ELPASDVPTH EERYEEFWTV RCENYGDPNF WVPFVRKVKH IKKKLMLGAD RFNRDPNKGL QYLQGVHLLP EKLDPKSVAC
0601: FFRYTCGLDK NVMGDFLGNH DQFCIQVLHE FAKTFDFQNM NLATALRLFV GTFKLSGEAQ KIHRVLEAFS ERYYEQSPHI LIDKDAAFVL AYSIILLNTD
0701: QHNAQVKTRM TEEDFIRNNR TINGGADLPR EYLSEIYHSI RHSEIQMDED KGTGFQLMTA SRWISVIYKS KETSPYIQCD AASHLDRDMF YIVSGPTIAA
0801: TSVVFEQAEQ EDVLRRCIDG LLAIAKLSAY YHLNSVLDDL VVSLCKFTPF FAPLSADEAV LVLGEDARAR MATEAVFLIA NKYGDYISAG WKNILECVLS
0901: LNKLHILPDH IASDAADDPE LSTSNLEQEK PSANPVPVVS QSQPSAMPRK SSSFIGRFLL SFDSEETKPL PSEEELAAYK HARGIVKDCH IDSIFSDSKF
1001: LQAESLQQLV NSLIRASGKD EASSVFCLEL LIAVTLNNRD RILLIWPTVY EHILGIVQLT LTPCTLVEKA VFGVLKICQR LLPYKENLTD ELLKSLQLVL
1101: KLKAKVADAY CERIAQEVVR LVKANASHVR SRTGWRTIIS LLSITARHPE ASEAGFEALR FIMSEGAHLL PSNYELCLDA ASHFAESRVG EVDRSISAID
1201: LMSNSVFCLA RWSQEAKNSI GETDAMMKLS EDIGKMWLKL VKNLKKVCLD QRDEVRNHAI SMLQRAIAGA DGIMLPQPLW FQCFDSAVFI LLDDVLTFSI
1301: ENSRKTLKKT VEETLVLATK LMSKAFLQSL QDISQQPSFC RLWVGVLNRL ETYMSTEFRG KRSEKVNELI PELLKNTLLV MKATGVLLPG DDIGSDSFWQ
1401: LTWLHVNKIS PSLQSEVFPQ EELDQFQRRN AKPEDPPVPG NEV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.