Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- mitochondrion 2
- plasma membrane 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74452 | Canola | cytosol | 98.72 | 96.93 |
| AT5G39500.1 | Thale cress | cytosol | 87.42 | 85.24 |
| CDX67432 | Canola | plastid | 93.46 | 79.99 |
| Solyc02g088290.2.1 | Tomato | cytosol | 62.54 | 62.41 |
| PGSC0003DMT400003631 | Potato | cytosol | 62.76 | 62.31 |
| CDX98140 | Canola | cytosol | 64.11 | 62.29 |
| CDY36422 | Canola | cytosol | 64.04 | 62.18 |
| Solyc02g067010.2.1 | Tomato | cytosol | 61.9 | 60.15 |
| CDY69502 | Canola | cytosol | 10.8 | 57.36 |
| CDX92516 | Canola | cytosol | 36.67 | 37.58 |
| CDY58967 | Canola | cytosol | 36.6 | 37.51 |
| CDX69135 | Canola | plastid | 20.9 | 17.42 |
| CDX75498 | Canola | mitochondrion, plasma membrane, plastid | 20.75 | 17.3 |
| CDY38039 | Canola | cytosol | 21.54 | 17.28 |
| CDX89082 | Canola | cytosol | 21.46 | 17.07 |
| CDY51011 | Canola | cytosol | 21.32 | 16.96 |
| CDY59102 | Canola | cytosol, mitochondrion, plastid | 20.04 | 16.65 |
| CDY54791 | Canola | mitochondrion, nucleus, plastid | 19.62 | 16.29 |
| CDY44841 | Canola | cytosol | 17.91 | 14.57 |
| CDY30954 | Canola | extracellular, golgi | 5.83 | 9.84 |
| CDY30953 | Canola | cytosol | 1.35 | 9.69 |
Protein Annotations
| Gene3D:1.10.1000.11 | Gene3D:1.10.220.20 | MapMan:22.3.3.1 | GO:A0A078GYL8 | UniProt:A0A078GYL8 | EnsemblPlants:CDY30249 |
| ProteinID:CDY30249 | ProteinID:CDY30249.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005086 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0032012 |
| GO:GO:0065009 | EnsemblPlantsGene:GSBRNA2T00044883001 | InterPro:IPR000904 | InterPro:IPR023394 | PFAM:PF01369 | PFAM:PF12783 |
| PFscan:PS50190 | PANTHER:PTHR44190 | PANTHER:PTHR44190:SF1 | SMART:SM00222 | SUPFAM:SSF48425 | InterPro:Sec7_C_sf |
| InterPro:Sec7_N | InterPro:Sec7_dom | InterPro:Sec7_dom_sf | UniParc:UPI0004EDD5EA | SEG:seg | : |
Description
BnaC04g31600DBnaC04g31600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GYL8]
Coordinates
chrLK032251:+:47404..52621
Molecular Weight (calculated)
157728.0 Da
IEP (calculated)
5.280
GRAVY (calculated)
-0.030
Length
1407 amino acids
Sequence
(BLAST)
(BLAST)
0001: MRYQNHHPSG SRNSFHGGEF NKPSKVAVAS MINSEIGAVL AVMRRNVRWG VRYIADDDQL EHSLIHSLKE LRKQIFSWQS NWQNVDPKLY IQPFLDVILS
0101: DETGAPITGV ALSSVYKILT LDVFTLDTVN VGEAMHIIVD AVKSCRFEVT DPASEEVVLM KILQVLLACI KCKAASGLSN QDICTIANTC LRVVHQSSSK
0201: SELLQRIARH TMHELVRCIF SQLPYITPLA NECELPVGDK NSGENTVENG SIDSVSDTLG GAEVSDDLNV AANGENAMLA PFGIPCMVEI FHFLCTLLNI
0301: GENSEVNSRS NPIAFDEDVP LFALGLINSA IELGGSSFRE HPKLLSLIQD ELFCNLMQFG MSMSPLILST VCSIVLNLYL TLRTELKVQL EAFFSCVLLR
0401: IAQTKHGSSY QQQEVAMEAL VDFCRQHTFM AEMFANFDCD ITCSNVFEDV SNLLSKSAFP VNGPLSAMHI IALDGLISMV QGMAERVGEE LPGSNVSTHE
0501: EGYEAFWTVR CESYGDPNLW VPFVRKSKHI KKKLMVGADH FNSDPKKGLQ QLQAMHLLPE ELDPKSVACF FRYTCGIDKN LIGDFLGNHD QFCVQVLHEF
0601: AKTFDFQNMN LDNALRLFVG TFRLPGESQK IQRVLEAFSE RYYEQSPQIL IDKDAALLLS YSIILLNTDH HNTQVKKKMT EEDFIRNNRC INGGADLPRE
0701: YLSELYHSIC DSEIQMIPDQ GTGFQMMTSS RWISVIYKSK ETSPYIICDS ASYLDRDMFH IVSGPTIAAT SVVFEQAEQE DVLQRCVDGL LAIAKLSAYY
0801: HLNSVLDDLV VSLCKFTPFF ASLSVDEAVL AIGEDARARM ATETVFLIAN KYGDYITSGW KNILECVLSL HKLQILPAHI ASDAADDPEE ERPLANPLSV
0901: VSQVQPSETP RKSSSFIGRF SQLLSFDMEE TKPLLPTEEE LAAYKHARGI VKDCHIDSIF SDSKFLQAES LQQLVNSLIK AAVKDKASAV FCLELLIAVT
1001: LNNRDRILLI WQTVYEHISG IVQSTTTPCP LVEKAVFGVL KICQRLLPYK ENLTDELLKL LQLVLKLDAR VADAYCEPIT QEVARLVKAN ASHVRSHVGW
1101: RTIISLISIT ARHPEASDAG FEALRFIMSE GAHLLLANYI LCSDAARQFA ESRVGEIDRS ISAIDLMSNS VFCLARWSQE AKNSVGEDEA MRKLSQDIGE
1201: MWLRLVNNFK RVCLDQRDQV RNHAISMLQR SIAGADGIML PQPIWFQCFD AAIFPLLDEL LAVSIENSRK TFKKTVEETL VLATKLMSKA FLQALQDISQ
1301: QPSFCRLWLG VLDRMETYMS TKFRGKRSER VHELIPELLK NTLLVMKTTG VLLPGDDIGS DSFWQLTWLH VKKISPSLQS EVFPQEELDQ FQRRNAKPED
1401: TPVVPEH
0101: DETGAPITGV ALSSVYKILT LDVFTLDTVN VGEAMHIIVD AVKSCRFEVT DPASEEVVLM KILQVLLACI KCKAASGLSN QDICTIANTC LRVVHQSSSK
0201: SELLQRIARH TMHELVRCIF SQLPYITPLA NECELPVGDK NSGENTVENG SIDSVSDTLG GAEVSDDLNV AANGENAMLA PFGIPCMVEI FHFLCTLLNI
0301: GENSEVNSRS NPIAFDEDVP LFALGLINSA IELGGSSFRE HPKLLSLIQD ELFCNLMQFG MSMSPLILST VCSIVLNLYL TLRTELKVQL EAFFSCVLLR
0401: IAQTKHGSSY QQQEVAMEAL VDFCRQHTFM AEMFANFDCD ITCSNVFEDV SNLLSKSAFP VNGPLSAMHI IALDGLISMV QGMAERVGEE LPGSNVSTHE
0501: EGYEAFWTVR CESYGDPNLW VPFVRKSKHI KKKLMVGADH FNSDPKKGLQ QLQAMHLLPE ELDPKSVACF FRYTCGIDKN LIGDFLGNHD QFCVQVLHEF
0601: AKTFDFQNMN LDNALRLFVG TFRLPGESQK IQRVLEAFSE RYYEQSPQIL IDKDAALLLS YSIILLNTDH HNTQVKKKMT EEDFIRNNRC INGGADLPRE
0701: YLSELYHSIC DSEIQMIPDQ GTGFQMMTSS RWISVIYKSK ETSPYIICDS ASYLDRDMFH IVSGPTIAAT SVVFEQAEQE DVLQRCVDGL LAIAKLSAYY
0801: HLNSVLDDLV VSLCKFTPFF ASLSVDEAVL AIGEDARARM ATETVFLIAN KYGDYITSGW KNILECVLSL HKLQILPAHI ASDAADDPEE ERPLANPLSV
0901: VSQVQPSETP RKSSSFIGRF SQLLSFDMEE TKPLLPTEEE LAAYKHARGI VKDCHIDSIF SDSKFLQAES LQQLVNSLIK AAVKDKASAV FCLELLIAVT
1001: LNNRDRILLI WQTVYEHISG IVQSTTTPCP LVEKAVFGVL KICQRLLPYK ENLTDELLKL LQLVLKLDAR VADAYCEPIT QEVARLVKAN ASHVRSHVGW
1101: RTIISLISIT ARHPEASDAG FEALRFIMSE GAHLLLANYI LCSDAARQFA ESRVGEIDRS ISAIDLMSNS VFCLARWSQE AKNSVGEDEA MRKLSQDIGE
1201: MWLRLVNNFK RVCLDQRDQV RNHAISMLQR SIAGADGIML PQPIWFQCFD AAIFPLLDEL LAVSIENSRK TFKKTVEETL VLATKLMSKA FLQALQDISQ
1301: QPSFCRLWLG VLDRMETYMS TKFRGKRSER VHELIPELLK NTLLVMKTTG VLLPGDDIGS DSFWQLTWLH VKKISPSLQS EVFPQEELDQ FQRRNAKPED
1401: TPVVPEH
0001: MGYQNHPSGS NSFHGEFKRC HSKPSKGAVA SMINSEIGAV LAVMRRNVRW GVRYIADDDQ LEHSLIHSLK ELRKQIFSWQ SNWQYVDPRL YIQPFLDVIL
0101: SDETGAPITG VALSSVYKIL TLEVFTLETV NVGEAMHIIV DAVKSCRFEV TDPASEEVVL MKILQVLLAC VKSKASNGLS NQDICTIVNT CLRVVHQSSS
0201: KSELLQRIAR HTMHELIRCI FSQLPFISPL ANECELHVDN KVGTVDWDPN SGEKRVENGN IASISDTLGT DKDDPSSEMV IPETDLRNDE KKTEVSDDLN
0301: AAANGENAMM APYGIPCMVE IFHFLCTLLN VGENGEVNSR SNPIAFDEDV PLFALGLINS AIELGGPSFR EHPKLLTLIQ DDLFCNLMQF GMSMSPLILS
0401: TVCSIVLNLY LNLRTELKVQ LEAFFSYVLL RIAQSKHGSS YQQQEVAMEA LVDLCRQHTF IAEVFANFDC DITCSNVFED VSNLLSKNAF PVNGPLSAMH
0501: ILALDGLISM VQGMAERVGE ELPASDVPTH EERYEEFWTV RCENYGDPNF WVPFVRKVKH IKKKLMLGAD RFNRDPNKGL QYLQGVHLLP EKLDPKSVAC
0601: FFRYTCGLDK NVMGDFLGNH DQFCIQVLHE FAKTFDFQNM NLATALRLFV GTFKLSGEAQ KIHRVLEAFS ERYYEQSPHI LIDKDAAFVL AYSIILLNTD
0701: QHNAQVKTRM TEEDFIRNNR TINGGADLPR EYLSEIYHSI RHSEIQMDED KGTGFQLMTA SRWISVIYKS KETSPYIQCD AASHLDRDMF YIVSGPTIAA
0801: TSVVFEQAEQ EDVLRRCIDG LLAIAKLSAY YHLNSVLDDL VVSLCKFTPF FAPLSADEAV LVLGEDARAR MATEAVFLIA NKYGDYISAG WKNILECVLS
0901: LNKLHILPDH IASDAADDPE LSTSNLEQEK PSANPVPVVS QSQPSAMPRK SSSFIGRFLL SFDSEETKPL PSEEELAAYK HARGIVKDCH IDSIFSDSKF
1001: LQAESLQQLV NSLIRASGKD EASSVFCLEL LIAVTLNNRD RILLIWPTVY EHILGIVQLT LTPCTLVEKA VFGVLKICQR LLPYKENLTD ELLKSLQLVL
1101: KLKAKVADAY CERIAQEVVR LVKANASHVR SRTGWRTIIS LLSITARHPE ASEAGFEALR FIMSEGAHLL PSNYELCLDA ASHFAESRVG EVDRSISAID
1201: LMSNSVFCLA RWSQEAKNSI GETDAMMKLS EDIGKMWLKL VKNLKKVCLD QRDEVRNHAI SMLQRAIAGA DGIMLPQPLW FQCFDSAVFI LLDDVLTFSI
1301: ENSRKTLKKT VEETLVLATK LMSKAFLQSL QDISQQPSFC RLWVGVLNRL ETYMSTEFRG KRSEKVNELI PELLKNTLLV MKATGVLLPG DDIGSDSFWQ
1401: LTWLHVNKIS PSLQSEVFPQ EELDQFQRRN AKPEDPPVPG NEV
0101: SDETGAPITG VALSSVYKIL TLEVFTLETV NVGEAMHIIV DAVKSCRFEV TDPASEEVVL MKILQVLLAC VKSKASNGLS NQDICTIVNT CLRVVHQSSS
0201: KSELLQRIAR HTMHELIRCI FSQLPFISPL ANECELHVDN KVGTVDWDPN SGEKRVENGN IASISDTLGT DKDDPSSEMV IPETDLRNDE KKTEVSDDLN
0301: AAANGENAMM APYGIPCMVE IFHFLCTLLN VGENGEVNSR SNPIAFDEDV PLFALGLINS AIELGGPSFR EHPKLLTLIQ DDLFCNLMQF GMSMSPLILS
0401: TVCSIVLNLY LNLRTELKVQ LEAFFSYVLL RIAQSKHGSS YQQQEVAMEA LVDLCRQHTF IAEVFANFDC DITCSNVFED VSNLLSKNAF PVNGPLSAMH
0501: ILALDGLISM VQGMAERVGE ELPASDVPTH EERYEEFWTV RCENYGDPNF WVPFVRKVKH IKKKLMLGAD RFNRDPNKGL QYLQGVHLLP EKLDPKSVAC
0601: FFRYTCGLDK NVMGDFLGNH DQFCIQVLHE FAKTFDFQNM NLATALRLFV GTFKLSGEAQ KIHRVLEAFS ERYYEQSPHI LIDKDAAFVL AYSIILLNTD
0701: QHNAQVKTRM TEEDFIRNNR TINGGADLPR EYLSEIYHSI RHSEIQMDED KGTGFQLMTA SRWISVIYKS KETSPYIQCD AASHLDRDMF YIVSGPTIAA
0801: TSVVFEQAEQ EDVLRRCIDG LLAIAKLSAY YHLNSVLDDL VVSLCKFTPF FAPLSADEAV LVLGEDARAR MATEAVFLIA NKYGDYISAG WKNILECVLS
0901: LNKLHILPDH IASDAADDPE LSTSNLEQEK PSANPVPVVS QSQPSAMPRK SSSFIGRFLL SFDSEETKPL PSEEELAAYK HARGIVKDCH IDSIFSDSKF
1001: LQAESLQQLV NSLIRASGKD EASSVFCLEL LIAVTLNNRD RILLIWPTVY EHILGIVQLT LTPCTLVEKA VFGVLKICQR LLPYKENLTD ELLKSLQLVL
1101: KLKAKVADAY CERIAQEVVR LVKANASHVR SRTGWRTIIS LLSITARHPE ASEAGFEALR FIMSEGAHLL PSNYELCLDA ASHFAESRVG EVDRSISAID
1201: LMSNSVFCLA RWSQEAKNSI GETDAMMKLS EDIGKMWLKL VKNLKKVCLD QRDEVRNHAI SMLQRAIAGA DGIMLPQPLW FQCFDSAVFI LLDDVLTFSI
1301: ENSRKTLKKT VEETLVLATK LMSKAFLQSL QDISQQPSFC RLWVGVLNRL ETYMSTEFRG KRSEKVNELI PELLKNTLLV MKATGVLLPG DDIGSDSFWQ
1401: LTWLHVNKIS PSLQSEVFPQ EELDQFQRRN AKPEDPPVPG NEV
Arabidopsis Description
GNL1ARF guanine-nucleotide exchange factor GNL1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLY5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.