Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX98140 | Canola | cytosol | 99.59 | 99.65 |
| CDY69502 | Canola | cytosol | 18.15 | 99.25 |
| AT1G13980.1 | Thale cress | cytosol | 95.24 | 95.11 |
| VIT_02s0012g01790.t01 | Wine grape | cytosol | 82.19 | 81.02 |
| KRG97867 | Soybean | cytosol | 81.37 | 80.04 |
| PGSC0003DMT400072858 | Potato | cytosol | 79.37 | 79.37 |
| Solyc05g013040.2.1 | Tomato | cytosol | 79.09 | 79.09 |
| Solyc04g005560.2.1 | Tomato | nucleus | 78.19 | 78.52 |
| GSMUA_Achr6P22810_001 | Banana | golgi | 58.73 | 73.49 |
| Os03t0666100-00 | Rice | extracellular, golgi | 61.35 | 73.41 |
| GSMUA_Achr6P03140_001 | Banana | cytosol, nucleus, plastid | 40.65 | 71.83 |
| Zm00001d013590_P001 | Maize | mitochondrion | 67.7 | 69.33 |
| KXG37878 | Sorghum | cytosol | 67.36 | 69.17 |
| TraesCS4D01G016900.1 | Wheat | cytosol | 66.05 | 67.68 |
| TraesCS4A01G294900.1 | Wheat | cytosol | 65.91 | 67.44 |
| TraesCS4B01G018700.1 | Wheat | cytosol | 65.77 | 67.35 |
| Os02t0326600-01 | Rice | cytosol, plasma membrane | 44.58 | 64.86 |
| CDY30249 | Canola | cytosol, mitochondrion, peroxisome, plasma membrane | 62.18 | 64.04 |
| TraesCS5A01G361300.1 | Wheat | cytosol | 56.52 | 63.88 |
| CDX74452 | Canola | cytosol | 62.59 | 63.29 |
| TraesCS5D01G370200.1 | Wheat | cytosol | 59.14 | 62.51 |
| HORVU4Hr1G002880.3 | Barley | cytosol | 61.28 | 62.45 |
| TraesCS5B01G363900.1 | Wheat | cytosol, plasma membrane | 60.52 | 62.02 |
| EER91946 | Sorghum | plastid | 60.52 | 61.5 |
| HORVU5Hr1G088970.4 | Barley | plastid | 55.42 | 61.11 |
| Zm00001d047092_P001 | Maize | mitochondrion, plastid | 59.97 | 61.11 |
| Zm00001d029910_P001 | Maize | plastid | 59.9 | 60.87 |
| HORVU3Hr1G017750.4 | Barley | cytosol | 41.27 | 60.53 |
| TraesCS3A01G098600.1 | Wheat | cytosol, plastid | 56.8 | 59.34 |
| TraesCS3B01G114200.1 | Wheat | plastid | 56.38 | 58.11 |
| CDX67432 | Canola | plastid | 62.32 | 54.93 |
| CDX92516 | Canola | cytosol | 40.65 | 42.9 |
| CDY58967 | Canola | cytosol | 40.58 | 42.83 |
| CDY38039 | Canola | cytosol | 22.29 | 18.43 |
| CDX89082 | Canola | cytosol | 22.22 | 18.2 |
| CDY51011 | Canola | cytosol | 22.02 | 18.03 |
| CDX69135 | Canola | plastid | 20.91 | 17.95 |
| CDX75498 | Canola | mitochondrion, plasma membrane, plastid | 20.84 | 17.89 |
| CDY59102 | Canola | cytosol, mitochondrion, plastid | 20.63 | 17.65 |
| CDY54791 | Canola | mitochondrion, nucleus, plastid | 20.36 | 17.41 |
| CDY44841 | Canola | cytosol | 18.5 | 15.49 |
| CDY30954 | Canola | extracellular, golgi | 6.42 | 11.16 |
| CDY30953 | Canola | cytosol | 1.38 | 10.2 |
Protein Annotations
| Gene3D:1.10.1000.11 | Gene3D:1.10.220.20 | MapMan:22.3.3.1 | GO:A0A078HF45 | UniProt:A0A078HF45 | InterPro:ARM-type_fold |
| EnsemblPlants:CDY36422 | ProteinID:CDY36422 | ProteinID:CDY36422.1 | GO:GO:0003674 | GO:GO:0005086 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0032012 |
| GO:GO:0065009 | EnsemblPlantsGene:GSBRNA2T00062037001 | InterPro:IPR000904 | InterPro:IPR023394 | PFAM:PF01369 | PFAM:PF12783 |
| PFscan:PS50190 | PANTHER:PTHR44190 | PANTHER:PTHR44190:SF1 | SMART:SM00222 | SUPFAM:SSF48371 | SUPFAM:SSF48425 |
| InterPro:Sec7_C_sf | InterPro:Sec7_N | InterPro:Sec7_dom | InterPro:Sec7_dom_sf | UniParc:UPI0004EF2D23 | SEG:seg |
Description
BnaC05g10230DBnaC05g10230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HF45]
Coordinates
chrLK032375:+:230631..237637
Molecular Weight (calculated)
162617.0 Da
IEP (calculated)
5.593
GRAVY (calculated)
-0.119
Length
1449 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGRLKLHSGI NAIEEEPEDF ESSESSNTTT LACMIDTEVA AVLAVMRRNV RWGGRYMSGE DQLEHSLIQS LKALRKQLFS WNQPWHTISP MLYLQPFLDV
0101: IRSDETGAPI TSIALSSVYK ILSLNVIDQN TTNIEDAMHL IVDSVTSCRF EVTDPASEEV VLMKILQVLL ACMKNRASVM LSNQHVCTVL NTCFRVVHQS
0201: GMKGELLQRV ARHTMHELVR CIFSHLPEVD RTETTLVNRS ESINQEKAGV DNDYAIVTKP VEDGNTNSEY DTENSVATFV SGAQSLMDDG PAGPGSRKPA
0301: SPYDLHIMTE PYGVPSMVEI FHFLCSLLNM VEHVGMGARA NTISFDEDVP LFALNMINSA IELGGASIRH HPRLLSLIQD ELFRNLMQFG LSMSPLILSM
0401: VCSIVLNLYQ HLRTELKLQL EAFFSCVILR LAQGKYGPSY QQQEVAMEAL VNFCRQKSYM VEMYANLDCD ITCSNVFEEL SNLISKSTFP VNSPLSAMHI
0501: LALDGLIAVI QGMAERISNG LTGLDLGPVH LDEYTPFWMV KCDNYSDPNH WVSFVRRRKY IKRRLMIGAD HFNRDPKKGL EFLQGTHLLP DKLDPQSVAC
0601: FFRYTAGLDK NLVGDFLGNH DEFCVQVLNE FAGTFDFQYM NLDTALRLFL ETFRLPGESQ KIQRVLEAFS ERYYMQSPEI LANKDAALVL SYSIIMLNTD
0701: QHNVQVKKKM TEEDFIRNNR HINGGNDLPR EFLSELYHSI CNNEIRTTPE QGSGFPEMTP SRWIDLMHKS KKTAPYILAD SRAYLDHDMF AIMSGPTIAA
0801: ISVVFDHAEH EDVYQTCIDG FLAIAKISAC HHLEDVLDDL VVSLCKFTTL LNPSSADEPV LAFGDDPKAR MATITIFTIA NKYGDYIRTG WRNILDCILR
0901: LHKLGLLPAR VATDAADESE LSSEQGQGKP LANSLSSAHL QAMGTPRRSS GLMGRFSQLL SLDTEEPRSQ PTEQQLAAHQ RTLQTIQKCH IDSIFTESKF
1001: LQAESLLQLA RALIWAAGRP QKGSSSPEDE DTAVFCLELL IAITLNNRDR IVLLWQGVYE HIATIAQSTV MPCNLVQKAI FGLLRICQRL LPYKESLADE
1101: LLRSLQLVLK LDARVADAYC EDIALEVSRL VKANANHIRS QAGWRTITSL LSITARHPEA SEAGFNAVSF VMSEGTHLYP ANYVLCVDAA RQFAESRVGQ
1201: SERSIRALDL MGDSLEHLAK WARTAKENMG EEDFAKTSQD FGEMWLRLVQ GLRKVCLDQR EDDVRNHALQ SLQKCLGGVD GINLAHSMWS QCFDKVIFTV
1301: LDDLLEIASG SQKDYRNMEG TLLLAIKLLS KVFLQLLQEL SQLSTFCKLW LGVLTRMEKY MKVKVRSKKS DKLQETVPEL LKNILLVMKT KGVLLQRSAL
1401: GGDSLWELTW LHVNNIAPSM RLELFPDQES AEPCDDESNG LASAEAGAT
0101: IRSDETGAPI TSIALSSVYK ILSLNVIDQN TTNIEDAMHL IVDSVTSCRF EVTDPASEEV VLMKILQVLL ACMKNRASVM LSNQHVCTVL NTCFRVVHQS
0201: GMKGELLQRV ARHTMHELVR CIFSHLPEVD RTETTLVNRS ESINQEKAGV DNDYAIVTKP VEDGNTNSEY DTENSVATFV SGAQSLMDDG PAGPGSRKPA
0301: SPYDLHIMTE PYGVPSMVEI FHFLCSLLNM VEHVGMGARA NTISFDEDVP LFALNMINSA IELGGASIRH HPRLLSLIQD ELFRNLMQFG LSMSPLILSM
0401: VCSIVLNLYQ HLRTELKLQL EAFFSCVILR LAQGKYGPSY QQQEVAMEAL VNFCRQKSYM VEMYANLDCD ITCSNVFEEL SNLISKSTFP VNSPLSAMHI
0501: LALDGLIAVI QGMAERISNG LTGLDLGPVH LDEYTPFWMV KCDNYSDPNH WVSFVRRRKY IKRRLMIGAD HFNRDPKKGL EFLQGTHLLP DKLDPQSVAC
0601: FFRYTAGLDK NLVGDFLGNH DEFCVQVLNE FAGTFDFQYM NLDTALRLFL ETFRLPGESQ KIQRVLEAFS ERYYMQSPEI LANKDAALVL SYSIIMLNTD
0701: QHNVQVKKKM TEEDFIRNNR HINGGNDLPR EFLSELYHSI CNNEIRTTPE QGSGFPEMTP SRWIDLMHKS KKTAPYILAD SRAYLDHDMF AIMSGPTIAA
0801: ISVVFDHAEH EDVYQTCIDG FLAIAKISAC HHLEDVLDDL VVSLCKFTTL LNPSSADEPV LAFGDDPKAR MATITIFTIA NKYGDYIRTG WRNILDCILR
0901: LHKLGLLPAR VATDAADESE LSSEQGQGKP LANSLSSAHL QAMGTPRRSS GLMGRFSQLL SLDTEEPRSQ PTEQQLAAHQ RTLQTIQKCH IDSIFTESKF
1001: LQAESLLQLA RALIWAAGRP QKGSSSPEDE DTAVFCLELL IAITLNNRDR IVLLWQGVYE HIATIAQSTV MPCNLVQKAI FGLLRICQRL LPYKESLADE
1101: LLRSLQLVLK LDARVADAYC EDIALEVSRL VKANANHIRS QAGWRTITSL LSITARHPEA SEAGFNAVSF VMSEGTHLYP ANYVLCVDAA RQFAESRVGQ
1201: SERSIRALDL MGDSLEHLAK WARTAKENMG EEDFAKTSQD FGEMWLRLVQ GLRKVCLDQR EDDVRNHALQ SLQKCLGGVD GINLAHSMWS QCFDKVIFTV
1301: LDDLLEIASG SQKDYRNMEG TLLLAIKLLS KVFLQLLQEL SQLSTFCKLW LGVLTRMEKY MKVKVRSKKS DKLQETVPEL LKNILLVMKT KGVLLQRSAL
1401: GGDSLWELTW LHVNNIAPSM RLELFPDQES AEPCDDESNG LASAEAGAT
0001: MGRLKLHSGI KAIEEEPEDF ECTDSSNTTT LACMIDTEIA AVLAVMRRNV RWGGRYMSGD DQLEHSLIQS LKALRKQVFS WNQPWHTISP MLYLQPFLDV
0101: IRSDETGAPI TSIALSSVYK ILNLNVIDQN TANIEDAMHL VVDSVTSCRF EVTDPASEEV VLMKILQVLL ACMKNKASVM LSNQHVCTVV NTCFRVVHQA
0201: GMKGELLQRV ARHTMHELVR CIFSHLPDVE RTETTLVNRA GSIKQEKAGV DSDYAIVSKP VEDGNANSEY DVENSMATFA TGAQSLMDDG PVGPGSRKPA
0301: SPYDLHIMTE PYGVPSMVEI FHFLCSLLNV VEHVGMGSRS NTIAFDEDVP LFALNLINSA IELGGSSIRH HPRLLSLIQD ELFRNLMQFG LSMSPLILSM
0401: VCSIVLNLYQ HLRTELKLQL EAFFSCVILR LAQGKYGPSY QQQEVAMEAL VNFCRQKSFM VEMYANLDCD ITCSNVFEEL SNLLSKSTFP VNCPLSAMHI
0501: LALDGLIAVI QGMAERISNG LTGLDLGPVH LDEYTPFWMV KCDNYSDPNH WVSFVRRRKY IKRRLMIGAD HFNRDPKKGL EFLQGTHLLP DKLDPQSVAC
0601: FFRYTAGLDK NLVGDFLGNH DEFCVQVLNE FAGTFDFQYM NLDTALRLFL ETFRLPGESQ KIQRVLEAFS ERYYMQSPEI LANKDAALVL SYSIIMLNTD
0701: QHNVQVKKKM TEEDFIRNNR HINGGNDLPR EFLSELFHSI CNNEIRTTPE QGAGFPEMTP SRWIDLMHKS KKTAPYILAD SRAYLDHDMF AIMSGPTIAA
0801: ISVVFDHAEH EDVYQTCIDG FLAIAKISAC HHLEDVLDDL VVSLCKFTTL LNPSSVDEPV LAFGDDAKAR MATITIFTIA NKYGDYIRTG WRNILDCILR
0901: LHKLGLLPAR VASDAADESE HSSEQGQGKP LANSLSSAHL QSMGTPRRSS GLMGRFSQLL SLDTEEPRSQ PTEQQLAAHQ RTLQTIQKCH IDSIFTESKF
1001: LQAESLLQLA RALIWAAGRP QKGTSSPEDE DTAVFCLELL IAITLNNRDR IVLLWQGVYE HIATIAQSTV MPCNLVDKAI FGLLRICQRL LPYKESLADE
1101: LLRSLQLVLK LDARVADAYC EQIAIEVSRL VKANANHIRS QAGWRTITSL LSITARHPEA SESGFDAVSF VMSEGTHLYP ANYVLCVDAA RQFAESRVGQ
1201: SERSIRALDL MGDSLEFLAK WALSAKENMG EEDFGKMSQD IGEMWLRLVQ GLRKVCLDQR EDVRNHALQS LQKCLGGVDG INLAHSMWSQ CFDKVIFTVL
1301: DDLLEIAAGS QKDYRNMEGT LLLAIKLLSK VFLQQLQELS QLSTFCKLWL GVLTRMEKYM KVKVRGKKSD KLQESVPELL KNILLVMKTK GVLLQRSALG
1401: GDSLWELTWL HVNNIAPSMR LELFPDQESS QLGDDETVSN GLSSPENTTG S
0101: IRSDETGAPI TSIALSSVYK ILNLNVIDQN TANIEDAMHL VVDSVTSCRF EVTDPASEEV VLMKILQVLL ACMKNKASVM LSNQHVCTVV NTCFRVVHQA
0201: GMKGELLQRV ARHTMHELVR CIFSHLPDVE RTETTLVNRA GSIKQEKAGV DSDYAIVSKP VEDGNANSEY DVENSMATFA TGAQSLMDDG PVGPGSRKPA
0301: SPYDLHIMTE PYGVPSMVEI FHFLCSLLNV VEHVGMGSRS NTIAFDEDVP LFALNLINSA IELGGSSIRH HPRLLSLIQD ELFRNLMQFG LSMSPLILSM
0401: VCSIVLNLYQ HLRTELKLQL EAFFSCVILR LAQGKYGPSY QQQEVAMEAL VNFCRQKSFM VEMYANLDCD ITCSNVFEEL SNLLSKSTFP VNCPLSAMHI
0501: LALDGLIAVI QGMAERISNG LTGLDLGPVH LDEYTPFWMV KCDNYSDPNH WVSFVRRRKY IKRRLMIGAD HFNRDPKKGL EFLQGTHLLP DKLDPQSVAC
0601: FFRYTAGLDK NLVGDFLGNH DEFCVQVLNE FAGTFDFQYM NLDTALRLFL ETFRLPGESQ KIQRVLEAFS ERYYMQSPEI LANKDAALVL SYSIIMLNTD
0701: QHNVQVKKKM TEEDFIRNNR HINGGNDLPR EFLSELFHSI CNNEIRTTPE QGAGFPEMTP SRWIDLMHKS KKTAPYILAD SRAYLDHDMF AIMSGPTIAA
0801: ISVVFDHAEH EDVYQTCIDG FLAIAKISAC HHLEDVLDDL VVSLCKFTTL LNPSSVDEPV LAFGDDAKAR MATITIFTIA NKYGDYIRTG WRNILDCILR
0901: LHKLGLLPAR VASDAADESE HSSEQGQGKP LANSLSSAHL QSMGTPRRSS GLMGRFSQLL SLDTEEPRSQ PTEQQLAAHQ RTLQTIQKCH IDSIFTESKF
1001: LQAESLLQLA RALIWAAGRP QKGTSSPEDE DTAVFCLELL IAITLNNRDR IVLLWQGVYE HIATIAQSTV MPCNLVDKAI FGLLRICQRL LPYKESLADE
1101: LLRSLQLVLK LDARVADAYC EQIAIEVSRL VKANANHIRS QAGWRTITSL LSITARHPEA SESGFDAVSF VMSEGTHLYP ANYVLCVDAA RQFAESRVGQ
1201: SERSIRALDL MGDSLEFLAK WALSAKENMG EEDFGKMSQD IGEMWLRLVQ GLRKVCLDQR EDVRNHALQS LQKCLGGVDG INLAHSMWSQ CFDKVIFTVL
1301: DDLLEIAAGS QKDYRNMEGT LLLAIKLLSK VFLQQLQELS QLSTFCKLWL GVLTRMEKYM KVKVRGKKSD KLQESVPELL KNILLVMKTK GVLLQRSALG
1401: GDSLWELTWL HVNNIAPSMR LELFPDQESS QLGDDETVSN GLSSPENTTG S
Arabidopsis Description
GNARF guanine-nucleotide exchange factor GNOM [Source:UniProtKB/Swiss-Prot;Acc:Q42510]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.