Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 7
- vacuole 6
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G29960.1 | CDX98140 | AT1G13980.1 | 10715321 |
| AT2G29960.1 | CDY36422 | AT1G13980.1 | 10715321 |
| AT2G29960.1 | CDY69502 | AT1G13980.1 | 10715321 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018353.1-P | Field mustard | endoplasmic reticulum | 99.0 | 99.0 |
| CDY58941 | Canola | endoplasmic reticulum | 99.0 | 99.0 |
| AT2G29960.1 | Thale cress | endoplasmic reticulum | 93.03 | 93.03 |
| KRG98290 | Soybean | endoplasmic reticulum | 87.56 | 86.27 |
| KRH30309 | Soybean | endoplasmic reticulum | 87.56 | 86.27 |
| CDY61026 | Canola | endoplasmic reticulum | 85.07 | 85.07 |
| CDX71155 | Canola | endoplasmic reticulum | 85.07 | 85.07 |
| CDX80340 | Canola | endoplasmic reticulum | 86.07 | 84.8 |
| CDY52123 | Canola | endoplasmic reticulum | 86.07 | 84.8 |
| CDY47469 | Canola | cytosol | 60.7 | 71.34 |
| CDY26779 | Canola | cytosol | 60.2 | 70.76 |
| CDX69094 | Canola | cytosol | 59.7 | 69.77 |
| CDX90292 | Canola | cytosol | 59.7 | 69.77 |
| CDY22414 | Canola | cytosol, extracellular | 59.7 | 69.77 |
| CDY12100 | Canola | cytosol | 59.7 | 69.77 |
| CDX72741 | Canola | cytosol | 59.2 | 69.19 |
| GSMUA_Achr7P04880_001 | Banana | cytosol | 65.17 | 67.53 |
| CDX72190 | Canola | endoplasmic reticulum | 74.63 | 66.96 |
| CDY27255 | Canola | endoplasmic reticulum | 74.63 | 66.96 |
| Os06t0708400-01 | Rice | plasma membrane | 67.66 | 65.38 |
| OQU77068 | Sorghum | endoplasmic reticulum | 68.16 | 64.32 |
| CDY27248 | Canola | cytosol | 57.71 | 63.74 |
| CDX72175 | Canola | cytosol | 57.71 | 63.39 |
| EER88931 | Sorghum | endoplasmic reticulum | 66.67 | 60.63 |
| EER88932 | Sorghum | endoplasmic reticulum | 65.67 | 59.73 |
| CDX75476 | Canola | endoplasmic reticulum | 61.19 | 54.91 |
| CDX69100 | Canola | endoplasmic reticulum | 60.7 | 54.46 |
| CDX76307 | Canola | endoplasmic reticulum | 57.71 | 52.02 |
| CDY17501 | Canola | endoplasmic reticulum | 57.21 | 51.11 |
| CDX91486 | Canola | cytosol | 48.26 | 48.5 |
| CDX74892 | Canola | cytosol, plastid | 48.76 | 48.04 |
| CDX93307 | Canola | plastid | 48.26 | 47.32 |
| CDY18371 | Canola | cytosol, plastid | 48.26 | 46.86 |
| CDX78508 | Canola | plastid | 58.21 | 45.7 |
| CDX70495 | Canola | plastid | 58.21 | 45.53 |
| CDY58761 | Canola | plastid | 57.71 | 44.96 |
| CDX76611 | Canola | plastid | 56.22 | 44.66 |
| CDX93994 | Canola | plastid | 57.71 | 44.44 |
| CDY11395 | Canola | plastid | 56.22 | 43.8 |
| Zm00001d014731_P017 | Maize | endoplasmic reticulum, vacuole | 54.23 | 36.82 |
| CDY36653 | Canola | cytosol | 50.75 | 28.25 |
| CDX71247 | Canola | cytosol | 50.75 | 28.25 |
| CDY53714 | Canola | nucleus | 52.24 | 18.88 |
| CDX93909 | Canola | nucleus | 52.24 | 17.16 |
| CDX68845 | Canola | nucleus | 45.77 | 12.03 |
| CDX75243 | Canola | nucleus | 45.27 | 11.9 |
Protein Annotations
| MapMan:18.12.1 | Gene3D:2.40.100.10 | GO:A0A078J139 | UniProt:A0A078J139 | EnsemblPlants:CDY55458 | ProteinID:CDY55458 |
| ProteinID:CDY55458.1 | InterPro:Cyclophilin-like_dom_sf | InterPro:Cyclophilin-type_PPIase | InterPro:Cyclophilin-type_PPIase_CS | InterPro:Cyclophilin-type_PPIase_dom | GO:GO:0000413 |
| GO:GO:0003674 | GO:GO:0003755 | GO:GO:0003824 | GO:GO:0006457 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016853 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00016857001 | InterPro:IPR002130 |
| InterPro:IPR029000 | PFAM:PF00160 | PIRSF:PIRSF001467 | PRINTS:PR00153 | ScanProsite:PS00170 | PFscan:PS50072 |
| PANTHER:PTHR11071 | PANTHER:PTHR11071:SF384 | SUPFAM:SSF50891 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0004EC7F15 |
| SEG:seg | : | : | : | : | : |
Description
BnaC04g54560DPeptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:A0A078J139]
Coordinates
chrLK033404:-:28192..29687
Molecular Weight (calculated)
21729.3 Da
IEP (calculated)
9.358
GRAVY (calculated)
-0.112
Length
201 amino acids
Sequence
(BLAST)
(BLAST)
001: MARSTSILFL TLLLFAALAL IQAKEDLKEI THKVYFDVEI DGKEAGRVVI GLFGKTVPKT AENFRALCTG EKGVGKSGKP LHYKGSKFHR IIPSFMIQGG
101: DFTHGNGMGG ESIYGQKFAD ENFKLKHTGP GLLSMANSGE DTNGSQFFIT TVTTSWLDGR HVVFGKVVQG MDVVYKIEAE GKQSGTPKSK VVIADSGELP
201: L
101: DFTHGNGMGG ESIYGQKFAD ENFKLKHTGP GLLSMANSGE DTNGSQFFIT TVTTSWLDGR HVVFGKVVQG MDVVYKIEAE GKQSGTPKSK VVIADSGELP
201: L
001: MAKASFILLG TLFLFGAIAS IQAKEDLKEV THKVYFDVEI DGKSAGRVVI GLFGKAVPKT AENFRALCTG EKGVGKSGKP LHYKGSKFHR IIPSFMIQGG
101: DFTHGNGMGG ESIYGQKFAD ENFKLKHTGP GVLSMANSGE DTNGSQFFIT TVTTSWLDGR HVVFGKVVQG MDVVYKIEAE GKQSGTPKSK VVIADSGELP
201: L
101: DFTHGNGMGG ESIYGQKFAD ENFKLKHTGP GVLSMANSGE DTNGSQFFIT TVTTSWLDGR HVVFGKVVQG MDVVYKIEAE GKQSGTPKSK VVIADSGELP
201: L
Arabidopsis Description
CYP19-4Peptidyl-prolyl cis-trans isomerase CYP19-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDP4]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.