CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 29364282

msms PMID: 29364282 doi

S Pahlow, A Ostendorp, L Krüßel, J Kehr

Molecular Plant Genetics, Universität Hamburg., Molecular Plant Genetics, Universität Hamburg; julia.kehr@uni-hamburg.de.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033574.1-P	Field mustard	cytosol	100.0	100.0
CDX72741	Canola	cytosol	98.84	98.84
CDX90292	Canola	cytosol	91.86	91.86
CDY12100	Canola	cytosol	91.86	91.86
AT2G21130.1	Thale cress	cytosol	89.53	88.51
KRH60719	Soybean	cytosol, endoplasmic reticulum, mitochondrion	85.47	85.47
KRH51416	Soybean	cytosol	84.88	84.88
KRH29120	Soybean	endoplasmic reticulum, nucleus	84.88	84.88
KRH24153	Soybean	endoplasmic reticulum, mitochondrion, nucleus	83.72	83.72
Solyc10g054910.1.1	Tomato	extracellular, unclear	82.56	82.56
PGSC0003DMT400011344	Potato	cytosol	82.56	82.56
VIT_03s0038g01930.t01	Wine grape	cytosol	81.4	81.4
EES05164	Sorghum	cytosol	81.4	81.4
Solyc01g111170.2.1	Tomato	extracellular, nucleus	80.81	81.29
VIT_18s0001g14400.t01	Wine grape	extracellular	80.81	80.81
PGSC0003DMT400004125	Potato	extracellular	80.23	80.7
CDX69094	Canola	cytosol	80.23	80.23
CDY47469	Canola	cytosol	79.65	80.12
Zm00001d050635_P001	Maize	plastid	79.65	80.12
CDY26779	Canola	cytosol	79.07	79.53
Zm00001d016661_P001	Maize	plastid	79.07	79.07
Zm00001d016660_P001	Maize	cytosol	79.07	79.07
EES04388	Sorghum	cytosol	78.49	78.95
TraesCS6B01G093100.2	Wheat	cytosol	78.49	78.95
TraesCS6D01G066700.1	Wheat	golgi, plastid	77.91	78.36
TraesCS6A01G068900.1	Wheat	cytosol	77.91	78.36
Os02t0121300-01	Rice	extracellular	76.74	76.74
TraesCS6A01G405900.1	Wheat	cytosol	70.35	72.46
CDY27248	Canola	cytosol	74.42	70.33
CDX72175	Canola	cytosol	73.84	69.4
HORVU6Hr1G012570.2	Barley	cytosol	79.07	66.02
HORVU6Hr1G092950.1	Barley	endoplasmic reticulum, golgi	72.09	65.61
CDX71155	Canola	endoplasmic reticulum	72.67	62.19
CDY61026	Canola	endoplasmic reticulum	72.09	61.69
CDY55458	Canola	endoplasmic reticulum	69.77	59.7
CDY58941	Canola	endoplasmic reticulum	69.77	59.7
CDY52123	Canola	endoplasmic reticulum	70.35	59.31
CDX80340	Canola	endoplasmic reticulum	70.35	59.31
TraesCS6B01G450300.1	Wheat	cytosol	69.19	54.34
CDX72190	Canola	endoplasmic reticulum	69.19	53.12
CDY27255	Canola	endoplasmic reticulum	68.6	52.68
TraesCS6B01G450400.1	Wheat	cytosol	66.86	52.51
TraesCS6A01G405800.1	Wheat	cytosol	73.26	51.01
CDX91486	Canola	cytosol	57.56	49.5
CDX74892	Canola	cytosol, plastid	58.14	49.02
CDX93307	Canola	plastid	57.56	48.29
CDY18371	Canola	cytosol, plastid	56.98	47.34
CDX75476	Canola	endoplasmic reticulum	58.72	45.09
CDX69100	Canola	endoplasmic reticulum	58.72	45.09
CDX76307	Canola	endoplasmic reticulum	57.56	44.39
CDX76611	Canola	plastid	64.53	43.87
CDX78508	Canola	plastid	65.12	43.75
CDX70495	Canola	plastid	65.12	43.58
CDY17501	Canola	endoplasmic reticulum	56.98	43.56
CDY11395	Canola	plastid	65.12	43.41
CDY58761	Canola	plastid	64.53	43.02
CDX93994	Canola	plastid	65.12	42.91
CDY36653	Canola	cytosol	62.21	29.64
CDX71247	Canola	cytosol	61.63	29.36
CDY53714	Canola	nucleus	63.95	19.78
CDX93909	Canola	nucleus	65.12	18.3
CDX68845	Canola	nucleus	50.0	11.24
CDX75243	Canola	nucleus	49.42	11.11

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	GO:A0A078GAL1	UniProt:A0A078GAL1	EnsemblPlants:CDY22414	ProteinID:CDY22414
ProteinID:CDY22414.1	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom	GO:GO:0000413
GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0006457	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00018906001	InterPro:IPR002130
InterPro:IPR029000	PFAM:PF00160	PIRSF:PIRSF001467	PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50072
PANTHER:PTHR11071	PANTHER:PTHR11071:SF382	SUPFAM:SSF50891	UniParc:UPI000182BB34	SEG:seg	:

Description

BnaA06g37360DPeptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:A0A078GAL1]

Coordinates

chrLK032130:+:620523..621295

Molecular Weight (calculated)

18384.9 Da

IEP (calculated)

8.334

GRAVY (calculated)

-0.295

Length

172 amino acids

Sequence
(BLAST)

001: MAFPKVFFDI NINGQAAGRI VMELYTDKTP KTAENFRALC TGEKGVGRKG KPLHFKGSSF HRVIPSFMCQ GGDFTAGNGT GGESIYGDKF EDENFERKHT
101: GPGNLSMANA GANTNGSQFF ICTVKTDWLD GKHVVFGQVV EGLDVVKAIE KVGSSSGKPS KPVVIADCGQ LS

Best Arabidopsis Sequence Match ( AT4G38740.1 )
(BLAST)

001: MAFPKVYFDM TIDGQPAGRI VMELYTDKTP RTAENFRALC TGEKGVGGTG KPLHFKGSKF HRVIPNFMCQ GGDFTAGNGT GGESIYGSKF EDENFERKHT
101: GPGILSMANA GANTNGSQFF ICTVKTDWLD GKHVVFGQVV EGLDVVKAIE KVGSSSGKPT KPVVVADCGQ LS

Arabidopsis Description

CYP18-3Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178V2S8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.